Tableau information
Concept source: d3rfza2 amino acid (a.a.) range (CYS161)(LEU197)
nSSEs in this Concept: 4
String of secondary struct.elems. (SSEs) defining this concept: EEEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(CYS161) (ASP167) E1
(VAL168) (PRO173) E2
(GLY177) (LYS189) E3
(ASN192) (LEU197) E4
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 45.5° E2
E3 148.1° 158.8° E3
E4 -42.4° -52.0° 147.9°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±13.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d3c6ea2 : (GLY304) (ILE339) [view usage] : b.1.18.0 |Immunoglobulin-like beta-sandwich |E set domains |automated matches |automated matches |Dengue virus 2 thailand/16681/84 [TaxId: 31634]
d3k5ra2 : (ARG104) (ILE148) [view usage] : b.1.6.0 |Immunoglobulin-like beta-sandwich |Cadherin-like |automated matches |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d1e4ja1 : (LYS4) (HIS41) [view usage] : b.1.1.4 |Immunoglobulin-like beta-sandwich |Immunoglobulin |I set domains |Fc gamma receptor ectodomain (CD32) |Human (Homo sapiens), III [TaxId: 9606]
d3cspa_ : (GLN2) (ARG41) [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |Myelin oligodendrocyte glycoprotein (MOG) |Norway rat (Rattus norvegicus) [TaxId: 10116]
d3ncma_ : (TYR1) (HIS37) [view usage] : b.1.1.4 |Immunoglobulin-like beta-sandwich |Immunoglobulin |I set domains |Neural cell adhesion molecule (NCAM) |Norway rat (Rattus norvegicus) [TaxId: 10116]
d4lp8a2 : (GLY141) (GLU173) [view usage] : b.1.18.16 |Immunoglobulin-like beta-sandwich |E set domains |Cytoplasmic domain of inward rectifier potassium channel |automated matches |Magnetospirillum magnetotacticum [TaxId: 188]
d2qvia2 : (ARG105) (ILE149) [view usage] : b.1.6.1 |Immunoglobulin-like beta-sandwich |Cadherin-like |Cadherin |N-cadherin (neural) |Mouse (Mus musculus) [TaxId: 10090]
d1xl4a1 : (GLY141) (GLU173) [view usage] : b.1.18.16 |Immunoglobulin-like beta-sandwich |E set domains |Cytoplasmic domain of inward rectifier potassium channel |Inward rectifier potassium channel kirbac3.1 |Magnetospirillum magnetotacticum [TaxId: 188]
d3ul6a_ : (ALA62) (SER99) [view usage] : d.17.1.0 |Cystatin-like |Cystatin/monellin |automated matches |automated matches |Saccharum officinarum [TaxId: 4547]
d1qksa2 : (ARG342) (ASP370) [view usage] : b.70.2.1 |8-bladed beta-propeller |C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase |C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase |C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase |Paracoccus denitrificans [TaxId: 266]
d1ekma1 : (SER386) (TYR432) [view usage] : b.30.2.1 |Supersandwich |Amine oxidase catalytic domain |Amine oxidase catalytic domain |Copper amine oxidase, domain 3 |Yeast (Hansenula polymorpha) [TaxId: 4905]
d2x6ca2 : (GLY141) (GLU173) [view usage] : b.1.18.0 |Immunoglobulin-like beta-sandwich |E set domains |automated matches |automated matches |Magnetospirillum magnetotacticum [TaxId: 188]
d1jjua4 : (ARG355) (GLY403) [view usage] : b.1.18.14 |Immunoglobulin-like beta-sandwich |E set domains |Quinohemoprotein amine dehydrogenase A chain, domains 4 and 5 |Quinohemoprotein amine dehydrogenase A chain, domains 4 and 5 |Paracoccus denitrificans [TaxId: 266]
d1m4va2 : (LEU106) (LEU137) [view usage] : d.15.6.1 |beta-Grasp (ubiquitin-like) |Superantigen toxins, C-terminal domain |Superantigen toxins, C-terminal domain |Superantigen-like protein SET3 |Staphylococcus aureus [TaxId: 1280]
d2p9ra_ : (SER104) (PRO147) [view usage] : b.1.29.3 |Immunoglobulin-like beta-sandwich |Macroglobulin |Complement C3 MG2-like |Alpha-2-macroglobulin MG2 |Human (Homo sapiens) [TaxId: 9606]
d3rfza2 : (CYS161) (LEU197) [view usage] : b.2.3.2 |Common fold of diphtheria toxin/transcription factors/cytochrome f |Bacterial adhesins |Pilus subunits |automated matches |Escherichia coli [TaxId: 562]
d3ul5b_ : (ALA62) (SER99) [view usage] : d.17.1.0 |Cystatin-like |Cystatin/monellin |automated matches |automated matches |Saccharum officinarum [TaxId: 4547]
d4q0xl1 : (ASP1) (TRP40) [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d2fwua1 : (ALA502) (GLY544) [view usage] : b.1.27.1 |Immunoglobulin-like beta-sandwich |CalX-like |CalX-beta domain |Sodium/calcium exchanger 1 |Dog (Canis familiaris) [TaxId: 9615]
d2ge4a_ : (GLY50) (GLY98) [view usage] : f.4.1.1 |Transmembrane beta-barrels |OMPA-like |Outer membrane protein |Outer membrane protein A (OMPA) transmembrane domain |Escherichia coli [TaxId: 562]
d1ot5a1 : (GLU506) (GLY537) [view usage] : b.18.1.20 |Galactose-binding domain-like |Galactose-binding domain-like |Proprotein convertase P-domain |Kexin, C-terminal domain |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d4kuce_ : (ASP21) (TYR51) [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d1qfwm_ : (ASP201) (SER231) [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |Immunoglobulin light chain kappa variable domain, VL-kappa |Mouse (Mus musculus), cluster 4 [TaxId: 10090]
d1wjja_ : (LEU31) (ASN81) [view usage] : b.40.4.3 |OB-fold |Nucleic acid-binding proteins |Single strand DNA-binding domain, SSB |Hypothetical protein At4g28440 (F20O9.120) |Thale cress (Arabidopsis thaliana) [TaxId: 3702]
d2ggeb2 : (VAL7) (GLU50) [view usage] : d.54.1.1 |Enolase N-terminal domain-like |Enolase N-terminal domain-like |Enolase N-terminal domain-like |Hypothetical protein YitF |Bacillus subtilis [TaxId: 1423]
d2cdea1 : (ASN2) (ASN32) [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |T-cell antigen receptor |Human (Homo sapiens), beta-chain [TaxId: 9606]
d1m1sa_ : (MSE100) (ASN137) [view usage] : b.1.11.2 |Immunoglobulin-like beta-sandwich |PapD-like |MSP-like |WR4 |Nematode (Caenorhabditis elegans) [TaxId: 6239]
d1wrnb_ : (LEU97) (HIS147) [view usage] : d.275.1.1 |Hut operon positive regulatory protein HutP |Hut operon positive regulatory protein HutP |Hut operon positive regulatory protein HutP |automated matches |Bacillus subtilis [TaxId: 1423]
d3gvka1 : (ASN386) (PRO422) [view usage] : b.68.1.2 |6-bladed beta-propeller |Sialidases |Endo-alpha-sialidase |automated matches |Enterobacteria phage [TaxId: 344021]
d2jzla_ : (VAL5) (GLU38) [view usage] : b.89.1.0 |Cyanovirin-N |Cyanovirin-N |automated matches |automated matches |Fungus (Neurospora crassa) [TaxId: 5141]
d4ei5d1 : (VAL4) (TRP34) [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d1kqfa2 : (ALA43) (GLY80) [view usage] : c.81.1.1 |Formate dehydrogenase/DMSO reductase, domains 1-3 |Formate dehydrogenase/DMSO reductase, domains 1-3 |Formate dehydrogenase/DMSO reductase, domains 1-3 |Formate dehydrogenase N, alpha subunit |Escherichia coli [TaxId: 562]
d1gydb_ : (TYR232) (LYS266) [view usage] : b.67.2.1 |5-bladed beta-propeller |Arabinanase/levansucrase/invertase |alpha-L-arabinanase-like |alpha-L-arabinanase |Cellvibrio cellulosa [TaxId: 155077]
d1o4za_ : (VAL157) (ILE187) [view usage] : b.29.1.2 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Glycosyl hydrolases family 16 |beta-Agarase A |Zobellia galactanivorans [TaxId: 63186]
d1kb5a_ : (GLN2) (TRP34) [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |T-cell antigen receptor |Mouse (Mus musculus), alpha-chain [TaxId: 10090]
d1ueya_ : (VAL16) (LYS49) [view usage] : b.1.2.1 |Immunoglobulin-like beta-sandwich |Fibronectin type III |Fibronectin type III |KIAA0343 protein |Human (Homo sapiens) [TaxId: 9606]
d1ce3a_ : (ALA13) (SER54) [view usage] : g.69.1.1 |Plant proteinase inhibitors |Plant proteinase inhibitors |Plant proteinase inhibitors |Multidomain proteinase inhibitor |Winged tobacco (Nicotiana alata) [TaxId: 4087]
d3l8qc1 : (GLU8) (ASP44) [view usage] : b.2.2.2 |Common fold of diphtheria toxin/transcription factors/cytochrome f |Carbohydrate-binding domain |Cellulose-binding domain family III |Cellulosomal scaffoldin adaptor protein B, ScaB |Acetivibrio cellulolyticus [TaxId: 35830]
d1qzna_ : (GLU8) (ASP44) [view usage] : b.2.2.2 |Common fold of diphtheria toxin/transcription factors/cytochrome f |Carbohydrate-binding domain |Cellulose-binding domain family III |Cellulosomal scaffoldin adaptor protein B, ScaB |Acetivibrio cellulolyticus [TaxId: 35830]
d3uypb_ : (LYS305) (ILE339) [view usage] : b.1.18.0 |Immunoglobulin-like beta-sandwich |E set domains |automated matches |automated matches |Dengue virus 4 [TaxId: 11070]
d4kvcl1 : (ILE2) (THR31) [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d1nbfa_ : (PRO400) (LEU433) [view usage] : d.3.1.9 |Cysteine proteinases |Cysteine proteinases |Ubiquitin carboxyl-terminal hydrolase, UCH |Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAUSP) |Human (Homo sapiens) [TaxId: 9606]
d3grda_ : (TYR67) (GLU103) [view usage] : d.17.4.0 |Cystatin-like |NTF2-like |automated matches |automated matches |Bacillus cereus [TaxId: 222523]
d4fo8c_ : (LYS54) (GLY115) [view usage] : d.127.1.1 |Creatinase/aminopeptidase |Creatinase/aminopeptidase |Creatinase/aminopeptidase |automated matches |Pseudomonas aeruginosa [TaxId: 208964]
d4ei5h1 : (VAL4) (TRP34) [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d2x6aa2 : (GLY141) (GLU173) [view usage] : b.1.18.16 |Immunoglobulin-like beta-sandwich |E set domains |Cytoplasmic domain of inward rectifier potassium channel |automated matches |Magnetospirillum magnetotacticum [TaxId: 188]
d1rowa_ : (LEU3) (ASN39) [view usage] : b.1.11.2 |Immunoglobulin-like beta-sandwich |PapD-like |MSP-like |SSP-19 |Nematode (Caenorhabditis elegans) [TaxId: 6239]
d2wlka2 : (GLY141) (GLU173) [view usage] : b.1.18.16 |Immunoglobulin-like beta-sandwich |E set domains |Cytoplasmic domain of inward rectifier potassium channel |Inward rectifier potassium channel kirbac3.1 |Magnetospirillum magnetotacticum [TaxId: 188]
d1anua_ : (VAL1) (ASP40) [view usage] : b.2.2.2 |Common fold of diphtheria toxin/transcription factors/cytochrome f |Carbohydrate-binding domain |Cellulose-binding domain family III |Cohesin domain |Clostridium thermocellum, cellulosome, various modules [TaxId: 1515]
d3gkwl1 : (ASP1) (LEU33) [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2jxmb1 : (LYS29) (PRO78) [view usage] : i.4.1.1 |Electron transport chains |Electron transport chains |Electron transport chains |Cytochrome f-plastocyanin complex |Photosynthetic prokaryote (Prochlorothrix hollandica) [TaxId: 1223]
d1p53a3 : (PRO369) (LEU405) [view usage] : b.1.1.4 |Immunoglobulin-like beta-sandwich |Immunoglobulin |I set domains |Intercellular adhesion molecule-1, ICAM-1 |Human (Homo sapiens) [TaxId: 9606]
d1epfa1 : (LEU1) (TRP35) [view usage] : b.1.1.4 |Immunoglobulin-like beta-sandwich |Immunoglobulin |I set domains |Neural cell adhesion molecule (NCAM) |Norway rat (Rattus norvegicus) [TaxId: 10116]
d2zqka1 : (PHE6) (ASN54) [view usage] : b.1.14.0 |Immunoglobulin-like beta-sandwich |Invasin/intimin cell-adhesion fragments |automated matches |automated matches |Escherichia coli [TaxId: 83334]
d3d5of1 : (ALA5) (ASN42) [view usage] : b.1.1.4 |Immunoglobulin-like beta-sandwich |Immunoglobulin |I set domains |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2f53b1 : (ILE1) (LEU40) [view usage] : b.1.1.2 |Immunoglobulin-like beta-sandwich |Immunoglobulin |C1 set domains (antibody constant domain-like) |beta2-microglobulin |Human (Homo sapiens) [TaxId: 9606]
d4e4fd1 : (GLN-1) (ASP33) [view usage] : d.54.1.0 |Enolase N-terminal domain-like |Enolase N-terminal domain-like |automated matches |automated matches |Pectobacterium carotovorum [TaxId: 561230]
d1ogya2 : (ILE12) (GLY42) [view usage] : c.81.1.1 |Formate dehydrogenase/DMSO reductase, domains 1-3 |Formate dehydrogenase/DMSO reductase, domains 1-3 |Formate dehydrogenase/DMSO reductase, domains 1-3 |Periplasmic nitrate reductase alpha chain |Rhodobacter sphaeroides [TaxId: 1063]
d4eetd_ : (GLU451) (ASP494) [view usage] : d.110.3.6 |Profilin-like |PYP-like sensor domain (PAS domain) |Flavin-binding PAS domain |automated matches |Thale cress (Arabidopsis thaliana) [TaxId: 3702]
d1wpua_ : (LEU97) (ASN146) [view usage] : d.275.1.1 |Hut operon positive regulatory protein HutP |Hut operon positive regulatory protein HutP |Hut operon positive regulatory protein HutP |automated matches |Bacillus subtilis [TaxId: 1423]
d1sfpa_ : (SER58) (GLN110) [view usage] : b.23.1.1 |CUB-like |Spermadhesin, CUB domain |Spermadhesin, CUB domain |Acidic seminal fluid protein (ASFP) |Cow (Bos taurus) [TaxId: 9913]
d4iiqa1 : (GLN2) (GLY31) [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
b.68, b.70, c.81, b.29, b.67, b.30, f.4, b.40, b.18, d.3, d.127, b.2, b.1, d.110, d.17, d.15, d.54, b.23, i.4, b.89,
g.69, d.275