Tableau information
Concept source: d7prna_ amino acid (a.a.) range (MET53)(GLY83)
nSSEs in this Concept: 4
String of secondary struct.elems. (SSEs) defining this concept: EEEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(MET53) (ASP57) E1
(ALA62) (GLY66) E2
(ALA68) (SER74) E3
(GLY77) (GLY83) E4
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 155.8° E2
E3 133.0° -31.8° E3
E4 -69.2° 123.9° 155.7°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±13.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d4hmza_ : (MET1) (GLU26) [view usage] : b.82.1.0 |Double-stranded beta-helix |RmlC-like cupins |automated matches |automated matches |Streptomyces bikiniensis [TaxId: 1896]
d3m2la_ : (TYR68) (ASP100) [view usage] : f.6.1.1 |Leukocidin-like |Leukocidin-like |Leukocidin (pore-forming toxin) |Alpha-hemolysin |Staphylococcus aureus [TaxId: 1280]
d1wcqc3 : (SER118) (ASN145) [view usage] : b.68.1.1 |6-bladed beta-propeller |Sialidases |Sialidases (neuraminidases) |automated matches |Micromonospora viridifaciens [TaxId: 1881]
d2ewra1 : (ASP95) (LEU128) [view usage] : d.218.1.11 |Nucleotidyltransferase |Nucleotidyltransferase |TM1012-like |Hypothetical protein TM1012 |Thermotoga maritima [TaxId: 2336]
d2fbeb_ : (GLY63) (VAL123) [view usage] : b.29.1.22 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |SPRY domain |Similar to Ret finger protein-like 1 |Human (Homo sapiens) [TaxId: 9606]
d1wlta1 : (GLU4) (GLU34) [view usage] : b.82.1.1 |Double-stranded beta-helix |RmlC-like cupins |dTDP-sugar isomerase |dTDP-4-dehydrorhamnose 3,5-epimerase RmlC |Sulfolobus tokodaii [TaxId: 111955]
d4hn1a_ : (MET1) (GLU26) [view usage] : b.82.1.0 |Double-stranded beta-helix |RmlC-like cupins |automated matches |automated matches |Streptomyces bikiniensis [TaxId: 1896]
d4aiva_ : (ARG71) (VAL116) [view usage] : b.33.1.0 |ISP domain |ISP domain |automated matches |automated matches |Mycobacterium tuberculosis [TaxId: 83332]
d1gwba_ : (GLU21) (ALA65) [view usage] : c.10.2.7 |Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) |L domain-like |Ngr ectodomain-like |von Willebrand factor binding domain of glycoprotein Ib alpha |Human (Homo sapiens) [TaxId: 9606]
d1vs6z1 : (GLU11) (GLY46) [view usage] : d.325.1.2 |L28p-like |L28p-like |Ribosomal protein L31p |Ribosomal protein L31p |Escherichia coli [TaxId: 562]
d3m4da_ : (TYR68) (ASP100) [view usage] : f.6.1.1 |Leukocidin-like |Leukocidin-like |Leukocidin (pore-forming toxin) |Alpha-hemolysin |Staphylococcus aureus [TaxId: 1280]
d2nqmb2 : (GLY83) (SER132) [view usage] : b.103.1.1 |MoeA N-terminal region -like |MoeA N-terminal region -like |MoeA N-terminal region -like |Molybdenum cofactor biosynthesis protein MoeA, N-terminal and linker domains |Escherichia coli [TaxId: 562]
d7prna_ : (MET53) (GLY83) [view usage] : f.4.3.1 |Transmembrane beta-barrels |Porins |Porin |Porin |Rhodopseudomonas blastica, strain DSM2131 [TaxId: 1075]
d1cjda1 : (PHE55) (LEU87) [view usage] : b.121.2.1 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Group II dsDNA viruses VP |Coat protein p3 |Coat protein p3 |Bacteriophage PRD1 [TaxId: 10658]
d1evua4 : (ASN436) (ILE477) [view usage] : d.3.1.4 |Cysteine proteinases |Cysteine proteinases |Transglutaminase core |Transglutaminase catalytic domain |Human (Homo sapiens), blood isozyme [TaxId: 9606]
d2jo6a1 : (LEU66) (GLY108) [view usage] : b.33.1.3 |ISP domain |ISP domain |NirD-like |NADH-nitrite reductase small subunit NirD |Escherichia coli [TaxId: 562]
d3kjda2 : (GLY545) (PHE579) [view usage] : d.166.1.2 |ADP-ribosylation |ADP-ribosylation |Poly(ADP-ribose) polymerase, C-terminal domain |automated matches |Human (Homo sapiens) [TaxId: 9606]
d4hn1c_ : (MET1) (GLU26) [view usage] : b.82.1.0 |Double-stranded beta-helix |RmlC-like cupins |automated matches |automated matches |Streptomyces bikiniensis [TaxId: 1896]
d4hmzb_ : (MET1) (GLU26) [view usage] : b.82.1.0 |Double-stranded beta-helix |RmlC-like cupins |automated matches |automated matches |Streptomyces bikiniensis [TaxId: 1896]
d1qffa_ : (GLY535) (GLY573) [view usage] : f.4.3.3 |Transmembrane beta-barrels |Porins |Ligand-gated protein channel |Ferric hydroxamate uptake receptor FhuA |Escherichia coli [TaxId: 562]
d2np2a_ : (ASN52) (ASP87) [view usage] : a.55.1.0 |IHF-like DNA-binding proteins |IHF-like DNA-binding proteins |automated matches |automated matches |Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]
d1eloa1 : (ILE289) (ALA318) [view usage] : b.43.3.1 |Reductase/isomerase/elongation factor common domain |Translation proteins |Elongation factors |Elongation factor G (EF-G), domain II |Thermus thermophilus [TaxId: 274]
d2wqae_ : (GLY59) (GLY92) [view usage] : b.60.1.1 |Lipocalins |Lipocalins |Retinol binding protein-like |Retinol binding protein |Human (Homo sapiens) [TaxId: 9606]
d1p9ag_ : (GLU5) (ALA49) [view usage] : c.10.2.7 |Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) |L domain-like |Ngr ectodomain-like |von Willebrand factor binding domain of glycoprotein Ib alpha |Human (Homo sapiens) [TaxId: 9606]
d1p3ha_ : (LYS2) (ASP31) [view usage] : b.35.1.1 |GroES-like |GroES-like |GroES |Chaperonin-10 (GroES) |Mycobacterium tuberculosis [TaxId: 1773]
d3buka_ : (GLY39) (CYS79) [view usage] : g.17.1.3 |Cystine-knot cytokines |Cystine-knot cytokines |Neurotrophin |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1su1c_ : (PRO90) (GLU134) [view usage] : d.159.1.7 |Metallo-dependent phosphatases |Metallo-dependent phosphatases |YfcE-like |Phosphodiesterase yfcE |Escherichia coli [TaxId: 562]
d3lhca_ : (SER11) (ASP44) [view usage] : b.89.1.1 |Cyanovirin-N |Cyanovirin-N |Cyanovirin-N |automated matches |Nostoc ellipsosporum [TaxId: 45916]
d4fcma_ : (GLY96) (VAL126) [view usage] : d.17.4.0 |Cystatin-like |NTF2-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3ppha1 : (GLY100) (VAL130) [view usage] : c.1.22.0 |TIM beta/alpha-barrel |UROD/MetE-like |automated matches |automated matches |Yeast (Candida albicans) [TaxId: 5476]
d4hn1d_ : (MET1) (GLU26) [view usage] : b.82.1.0 |Double-stranded beta-helix |RmlC-like cupins |automated matches |automated matches |Streptomyces bikiniensis [TaxId: 1896]
d1u0nd_ : (CYS4) (ALA49) [view usage] : c.10.2.7 |Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) |L domain-like |Ngr ectodomain-like |von Willebrand factor binding domain of glycoprotein Ib alpha |Human (Homo sapiens) [TaxId: 9606]
d5prna_ : (MET53) (GLY83) [view usage] : f.4.3.1 |Transmembrane beta-barrels |Porins |Porin |Porin |Rhodopseudomonas blastica, strain DSM2131 [TaxId: 1075]
d4hmzc_ : (MET1) (GLU26) [view usage] : b.82.1.0 |Double-stranded beta-helix |RmlC-like cupins |automated matches |automated matches |Streptomyces bikiniensis [TaxId: 1896]
d2fbec_ : (GLY63) (VAL123) [view usage] : b.29.1.22 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |SPRY domain |Similar to Ret finger protein-like 1 |Human (Homo sapiens) [TaxId: 9606]
d1h6s1_ : (MET53) (GLY83) [view usage] : f.4.3.1 |Transmembrane beta-barrels |Porins |Porin |Porin |Rhodopseudomonas blastica, strain DSM2131 [TaxId: 1075]
d1bdaa_ : (GLN10) (CYS42) [view usage] : b.47.1.2 |Trypsin-like serine proteases |Trypsin-like serine proteases |Eukaryotic proteases |Single chain tissue plasminogen activator |Human (Homo sapiens) [TaxId: 9606]
d1k24a_ : (GLY222) (GLY250) [view usage] : f.4.4.2 |Transmembrane beta-barrels |OMPT-like |Outer membrane adhesin/invasin OpcA |Outer membrane adhesin/invasin OpcA |Neisseria meningitidis [TaxId: 487]
d1q23a_ : (GLY137) (GLN190) [view usage] : c.43.1.1 |CoA-dependent acyltransferases |CoA-dependent acyltransferases |CAT-like |Chloramphenicol acetyltransferase, CAT |Escherichia coli [TaxId: 562]
d1vw4n_ : (ASP72) (HIS107) [view usage] : i.1.1.2 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Large subunit |Eukaryotic, mitochondrial (54S or 39S subunit) |Saccharomyces cerevisiae [TaxId: 4932]
d1ulta_ : (ALA420) (SER446) [view usage] : e.23.1.1 |Acetyl-CoA synthetase-like |Acetyl-CoA synthetase-like |Acetyl-CoA synthetase-like |Long chain fatty acid-CoA ligase TT0168 |Thermus thermophilus [TaxId: 274]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
b.68, c.1, c.10, b.82, d.159, i.1, b.29, b.47, f.4, d.166, b.60, b.121, d.3, e.23, c.43, d.17, b.43, a.55, d.218, g.17,
b.33, f.6, b.89, b.103, d.325, b.35