Tableau information
Concept source: d2bjra1 amino acid (a.a.) range (VAL35)(GLY84)
nSSEs in this Concept: 4
String of secondary struct.elems. (SSEs) defining this concept: EEEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(VAL35) (ASN41) E1
(ARG43) (ASN51) E2
(VAL55) (PRO61) E3
(GLY75) (GLY84) E4
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 139.0° E2
E3 -60.3° 140.0° E3
E4 139.0° -77.8° 105.9°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±13.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1h3ia1 : (GLY72) (ASP112) [view usage] : b.76.2.1 |open-sided beta-meander |Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain |Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain |Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain |Human (Homo sapiens) [TaxId: 9606]
d2dnca_ : (GLY7) (ALA55) [view usage] : b.84.1.0 |Barrel-sandwich hybrid |Single hybrid motif |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1w52x2 : (VAL401) (PRO451) [view usage] : b.12.1.0 |Lipase/lipooxygenase domain (PLAT/LH2 domain) |Lipase/lipooxygenase domain (PLAT/LH2 domain) |automated matches |automated matches |Horse (Equus caballus) [TaxId: 9796]
d1zjda1 : (GLN30) (GLY70) [view usage] : b.47.1.2 |Trypsin-like serine proteases |Trypsin-like serine proteases |Eukaryotic proteases |Coagulation factor XI |Human (Homo sapiens) [TaxId: 9606]
d1svpa_ : (GLY187) (ASN222) [view usage] : b.47.1.3 |Trypsin-like serine proteases |Trypsin-like serine proteases |Viral proteases |Viral capsid protein |Sindbis virus [TaxId: 11034]
d1rxla_ : (ARG62) (GLY94) [view usage] : b.2.3.6 |Common fold of diphtheria toxin/transcription factors/cytochrome f |Bacterial adhesins |Dr-family adhesin |DraA/Afimbrial adhesin Afa-III |Escherichia coli [TaxId: 562]
d4eqya_ : (HIS165) (GLY193) [view usage] : b.81.1.0 |Single-stranded left-handed beta-helix |Trimeric LpxA-like enzymes |automated matches |automated matches |Burkholderia thailandensis [TaxId: 271848]
d1uloa_ : (TRP16) (GLY51) [view usage] : b.18.1.14 |Galactose-binding domain-like |Galactose-binding domain-like |CBM4/9 |Cellulose-binding domain of cellulase C |Cellulomonas fimi [TaxId: 1708]
d2d9ta1 : (CYS16) (GLU65) [view usage] : b.34.9.1 |SH3-like barrel |Tudor/PWWP/MBT |Tudor domain |Tudor domain-containing protein 3, TDRD3 |Mouse (Mus musculus) [TaxId: 10090]
d4agka_ : (LEU234) (TRP267) [view usage] : b.47.1.3 |Trypsin-like serine proteases |Trypsin-like serine proteases |Viral proteases |automated matches |Aura virus [TaxId: 44158]
d2aw2b1 : (ASP7) (PRO39) [view usage] : g.24.1.1 |TNF receptor-like |TNF receptor-like |TNF receptor-like |Cellular receptor HveA |Human (Homo sapiens) [TaxId: 9606]
d1ep5a_ : (GLY198) (ASN233) [view usage] : b.47.1.3 |Trypsin-like serine proteases |Trypsin-like serine proteases |Viral proteases |Viral capsid protein |Venezuelan equine encephalitis virus [TaxId: 11036]
d1ep5a_ : (LEU242) (TRP275) [view usage] : b.47.1.3 |Trypsin-like serine proteases |Trypsin-like serine proteases |Viral proteases |Viral capsid protein |Venezuelan equine encephalitis virus [TaxId: 11036]
d4agja_ : (LEU234) (TRP267) [view usage] : b.47.1.3 |Trypsin-like serine proteases |Trypsin-like serine proteases |Viral proteases |automated matches |Aura virus [TaxId: 44158]
d4omoa_ : (HIS83) (ASP141) [view usage] : b.34.2.0 |SH3-like barrel |SH3-domain |automated matches |automated matches |Chicken (Gallus gallus) [TaxId: 9031]
d1htoa1 : (GLY26) (ASP93) [view usage] : d.15.9.1 |beta-Grasp (ubiquitin-like) |Glutamine synthetase, N-terminal domain |Glutamine synthetase, N-terminal domain |Glutamine synthetase, N-terminal domain |Mycobacterium tuberculosis [TaxId: 1773]
d2bjra1 : (VAL35) (GLY84) [view usage] : b.169.1.1 |MFPT repeat-like |MFPT repeat-like |MFPT repeat |Sperm motility protein MFP2 |Pig roundworm (Ascaris suum), isoform B [TaxId: 6253]
d4wf8a_ : (SER1102) (CYS1145) [view usage] : b.47.1.3 |Trypsin-like serine proteases |Trypsin-like serine proteases |Viral proteases |automated matches |Hepatitis C virus [TaxId: 11103]
d1k28a1 : (ASN7) (ASP88) [view usage] : b.40.8.1 |OB-fold |gp5 N-terminal domain-like |gp4 N-terminal domain-like |Tail-associated lysozyme gp5, N-terminal domain |Bacteriophage T4 [TaxId: 10665]
d1wbaa_ : (LYS18) (VAL94) [view usage] : b.42.4.1 |beta-Trefoil |STI-like |Kunitz (STI) inhibitors |Winged bean albumin 1 |Winged bean (Psophocarpus tetragonolobus) [TaxId: 3891]
d1ep6c_ : (GLY198) (ASP232) [view usage] : b.47.1.3 |Trypsin-like serine proteases |Trypsin-like serine proteases |Viral proteases |Viral capsid protein |Venezuelan equine encephalitis virus [TaxId: 11036]
d1nwva1 : (ASN71) (GLU122) [view usage] : g.18.1.1 |Complement control module/SCR domain |Complement control module/SCR domain |Complement control module/SCR domain |Complement decay-accelerating factor (Daf, CD55) |Human (Homo sapiens) [TaxId: 9606]
d1ld4a_ : (GLY1187) (ASN1222) [view usage] : i.6.1.1 |Viruses and virus-receptor complexes |Viruses and virus-receptor complexes |Viruses and virus-receptor complexes |Structural proteins |Sindbis virus [TaxId: 11034]
d1ld4a_ : (LEU1231) (TRP1264) [view usage] : i.6.1.1 |Viruses and virus-receptor complexes |Viruses and virus-receptor complexes |Viruses and virus-receptor complexes |Structural proteins |Sindbis virus [TaxId: 11034]
d1hl8a1 : (CYS364) (ASP400) [view usage] : b.71.1.3 |Glycosyl hydrolase domain |Glycosyl hydrolase domain |Putative alpha-L-fucosidase C-terminal domain |Putative alpha-L-fucosidase C-terminal domain |Thermotoga maritima [TaxId: 2336]
d1hl9a1 : (CYS364) (ASP400) [view usage] : b.71.1.3 |Glycosyl hydrolase domain |Glycosyl hydrolase domain |Putative alpha-L-fucosidase C-terminal domain |Putative alpha-L-fucosidase C-terminal domain |Thermotoga maritima [TaxId: 2336]
d1dyla_ : (LEU235) (TRP267) [view usage] : i.6.1.1 |Viruses and virus-receptor complexes |Viruses and virus-receptor complexes |Viruses and virus-receptor complexes |SFV capsid |Semliki forest virus [TaxId: 11033]
d1wyka_ : (GLY187) (ASN222) [view usage] : b.47.1.3 |Trypsin-like serine proteases |Trypsin-like serine proteases |Viral proteases |Viral capsid protein |Sindbis virus [TaxId: 11034]
d1wwca_ : (HIS319) (GLY361) [view usage] : b.1.1.4 |Immunoglobulin-like beta-sandwich |Immunoglobulin |I set domains |NT3 binding domain of trkC receptor |Human (Homo sapiens) [TaxId: 9606]
d1wway_ : (THR292) (GLY344) [view usage] : b.1.1.4 |Immunoglobulin-like beta-sandwich |Immunoglobulin |I set domains |High affinity nerve growth factor receptor TrkA, different domains |Human (Homo sapiens) [TaxId: 9606]
d3mdjb1 : (SER103) (ASN154) [view usage] : b.98.1.0 |Zn aminopeptidase N-terminal domain |Zn aminopeptidase N-terminal domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1ddta1 : (HIS449) (GLY480) [view usage] : b.2.1.1 |Common fold of diphtheria toxin/transcription factors/cytochrome f |Diphtheria toxin, C-terminal domain |Diphtheria toxin, C-terminal domain |Diphtheria toxin, C-terminal domain |Corynebacterium diphtheriae [TaxId: 1717]
d1skyb2 : (GLU51) (GLY92) [view usage] : b.49.1.1 |Domain of alpha and beta subunits of F1 ATP synthase-like |N-terminal domain of alpha and beta subunits of F1 ATP synthase |N-terminal domain of alpha and beta subunits of F1 ATP synthase |F1 ATP synthase alpha subunit, domain 1 |Bacillus sp., strain ps3 [TaxId: 1409]
d1ep5c_ : (GLY198) (ASN233) [view usage] : b.47.1.3 |Trypsin-like serine proteases |Trypsin-like serine proteases |Viral proteases |Viral capsid protein |Venezuelan equine encephalitis virus [TaxId: 11036]
d1ep5c_ : (LEU242) (TRP275) [view usage] : b.47.1.3 |Trypsin-like serine proteases |Trypsin-like serine proteases |Viral proteases |Viral capsid protein |Venezuelan equine encephalitis virus [TaxId: 11036]
d4a19f_ : (VAL12) (LYS57) [view usage] : i.1.1.2 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Large subunit |Eukaryotic, cytoplasmic (60S subunit) |Tetrahymena thermophila [TaxId: 5911]
d2f3ia_ : (GLY3) (TYR65) [view usage] : b.40.4.0 |OB-fold |Nucleic acid-binding proteins |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1laba_ : (ALA1) (SER49) [view usage] : b.84.1.1 |Barrel-sandwich hybrid |Single hybrid motif |Biotinyl/lipoyl-carrier proteins and domains |Lipoyl domain of dihydrolipoamide acetyltransferase |Bacillus stearothermophilus [TaxId: 1422]
d1gh7a1 : (LEU32) (PHE89) [view usage] : b.1.2.1 |Immunoglobulin-like beta-sandwich |Fibronectin type III |Fibronectin type III |Common beta-chain in the GM-CSF, IL-3 and IL-5 receptors |Human (Homo sapiens) [TaxId: 9606]
d1l1na_ : (VAL16) (ASP50) [view usage] : b.47.1.4 |Trypsin-like serine proteases |Trypsin-like serine proteases |Viral cysteine protease of trypsin fold |3C cysteine protease (picornain 3C) |Human poliovirus 1 Mahoney [TaxId: 12081]
d2xbta_ : (ALA58) (ALA101) [view usage] : b.2.2.0 |Common fold of diphtheria toxin/transcription factors/cytochrome f |Carbohydrate-binding domain |automated matches |automated matches |Bacteroides cellulosolvens [TaxId: 35825]
d2dnea_ : (SER6) (SER55) [view usage] : b.84.1.0 |Barrel-sandwich hybrid |Single hybrid motif |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1ep5b_ : (GLY198) (ASN233) [view usage] : b.47.1.3 |Trypsin-like serine proteases |Trypsin-like serine proteases |Viral proteases |Viral capsid protein |Venezuelan equine encephalitis virus [TaxId: 11036]
d1ep5b_ : (LEU242) (TRP275) [view usage] : b.47.1.3 |Trypsin-like serine proteases |Trypsin-like serine proteases |Viral proteases |Viral capsid protein |Venezuelan equine encephalitis virus [TaxId: 11036]
d3gwyb_ : (LYS2) (GLU43) [view usage] : d.113.1.0 |Nudix |Nudix |automated matches |automated matches |Bacteroides fragilis [TaxId: 272559]
d2h0eb_ : (LYS10) (VAL52) [view usage] : b.3.4.0 |Prealbumin-like |Transthyretin (synonym: prealbumin) |automated matches |automated matches |Bacillus subtilis [TaxId: 1423]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
b.81, i.1, b.47, b.76, i.6, b.40, b.18, b.2, b.1, b.42, b.84, b.34, d.15, b.3, d.113, b.71, g.18, b.49, b.98, b.12,
b.169, g.24