Tableau information
Concept source: d1gl4a1 amino acid (a.a.) range (GLY532)(GLU563)
nSSEs in this Concept: 4
String of secondary struct.elems. (SSEs) defining this concept: EEEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(GLY532) (GLU538) E1
(TYR540) (TYR546) E2
(SER549) (SER555) E3
(ARG557) (GLU563) E4
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 -66.0° E2
E3 110.2° 152.0° E3
E4 149.9° -142.5° -51.2°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±13.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1gl4a1 : (GLY532) (GLU563) [view usage] : d.22.1.2 |GFP-like |GFP-like |Domain G2 of nidogen-1 |Domain G2 of nidogen-1 |Mouse (Mus musculus) [TaxId: 10090]
d1l3wa5 : (GLY437) (ASP461) [view usage] : b.1.6.1 |Immunoglobulin-like beta-sandwich |Cadherin-like |Cadherin |C-cadherin ectodomain |African clawed frog (Xenopus laevis) [TaxId: 8355]
d2x1wa_ : (PRO155) (SER182) [view usage] : g.17.1.0 |Cystine-knot cytokines |Cystine-knot cytokines |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d4jhba_ : (GLU351) (PRO377) [view usage] : b.1.18.1 |Immunoglobulin-like beta-sandwich |E set domains |NF-kappa-B/REL/DORSAL transcription factors, C-terminal domain |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d1ts5a2 : (THR96) (LYS121) [view usage] : d.15.6.1 |beta-Grasp (ubiquitin-like) |Superantigen toxins, C-terminal domain |Superantigen toxins, C-terminal domain |Toxic shock syndrome toxin-1 (TSST-1) |Staphylococcus aureus [TaxId: 1280]
d1g96a_ : (LYS92) (ASP119) [view usage] : d.17.1.2 |Cystatin-like |Cystatin/monellin |Cystatins |Cystatin C |Human (Homo sapiens) [TaxId: 9606]
d1q55a_ : (GLY437) (ASP461) [view usage] : i.20.1.1 |Ep-cadherin |Ep-cadherin |Ep-cadherin |Ep-cadherin |Mouse (Mus musculus) [TaxId: 10090]
d1tija_ : (LYS92) (GLN118) [view usage] : d.17.1.2 |Cystatin-like |Cystatin/monellin |Cystatins |Cystatin C |Human (Homo sapiens) [TaxId: 9606]
d1ciya2 : (LEU296) (PRO325) [view usage] : b.77.2.1 |beta-Prism I |delta-Endotoxin (insectocide), middle domain |delta-Endotoxin (insectocide), middle domain |delta-Endotoxin (insectocide), middle domain |Bacillus thuringiensis, CRYIA (A) [TaxId: 1428]
d1nbca_ : (ASP50) (SER83) [view usage] : b.2.2.2 |Common fold of diphtheria toxin/transcription factors/cytochrome f |Carbohydrate-binding domain |Cellulose-binding domain family III |Cellusomal scaffolding protein A, scaffoldin |Clostridium thermocellum [TaxId: 1515]
d1bvoa_ : (PRO117) (LYS153) [view usage] : b.2.5.3 |Common fold of diphtheria toxin/transcription factors/cytochrome f |p53-like transcription factors |Rel/Dorsal transcription factors, DNA-binding domain |Dorsal homologue Gambif1 |African malaria mosquito (Anopheles gambiae) [TaxId: 7165]
d1co1a_ : (TYR73) (VAL97) [view usage] : b.2.5.6 |Common fold of diphtheria toxin/transcription factors/cytochrome f |p53-like transcription factors |RUNT domain |Acute myeloid leukemia 1 protein (AML1), RUNT domain |Human (Homo sapiens) [TaxId: 9606]
d2lssa_ : (HIS43) (LYS70) [view usage] : b.40.4.0 |OB-fold |Nucleic acid-binding proteins |automated matches |automated matches |Rickettsia rickettsii [TaxId: 392021]
d1tijb_ : (LYS92) (GLN118) [view usage] : d.17.1.2 |Cystatin-like |Cystatin/monellin |Cystatins |Cystatin C |Human (Homo sapiens) [TaxId: 9606]
d2b24b_ : (ALA636) (LEU665) [view usage] : d.17.4.4 |Cystatin-like |NTF2-like |Ring hydroxylating beta subunit |automated matches |Rhodococcus sp. [TaxId: 92694]
d4a75e_ : (PHE77) (GLY104) [view usage] : b.40.4.0 |OB-fold |Nucleic acid-binding proteins |automated matches |automated matches |Xenopus (Silurana) tropicalis [TaxId: 8364]
d4icka_ : (ARG4) (PRO47) [view usage] : d.113.1.1 |Nudix |Nudix |MutT-like |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2fcpa_ : (GLY430) (ASN471) [view usage] : f.4.3.3 |Transmembrane beta-barrels |Porins |Ligand-gated protein channel |Ferric hydroxamate uptake receptor FhuA |Escherichia coli [TaxId: 562]
d2fcpa_ : (GLY475) (PRO511) [view usage] : f.4.3.3 |Transmembrane beta-barrels |Porins |Ligand-gated protein channel |Ferric hydroxamate uptake receptor FhuA |Escherichia coli [TaxId: 562]
d2czjg1 : (LYS38) (TYR63) [view usage] : b.111.1.1 |Small protein B (SmpB) |Small protein B (SmpB) |Small protein B (SmpB) |Small protein B (SmpB) |Thermus thermophilus [TaxId: 274]
d4pofa_ : (GLY218) (PRO251) [view usage] : b.40.4.0 |OB-fold |Nucleic acid-binding proteins |automated matches |automated matches |Pyrococcus furiosus [TaxId: 186497]
d1nyed_ : (GLY692) (PRO727) [view usage] : d.227.1.1 |OsmC-like |OsmC-like |Ohr/OsmC resistance proteins |Osmotically inducible protein OsmC |Escherichia coli [TaxId: 562]
d3stda_ : (LEU81) (LYS114) [view usage] : d.17.4.1 |Cystatin-like |NTF2-like |Scytalone dehydratase |Scytalone dehydratase |Fungus (Magnaporthe grisea) [TaxId: 148305]
d4m4da1 : (PHE122) (CYS164) [view usage] : d.83.1.0 |Aha1/BPI domain-like |Bactericidal permeability-increasing protein, BPI |automated matches |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d1v9ic_ : (PRO47) (GLY83) [view usage] : b.74.1.1 |Carbonic anhydrase |Carbonic anhydrase |Carbonic anhydrase |Carbonic anhydrase |Cow (Bos taurus), isozyme II [TaxId: 9913]
d1ewfa1 : (GLY49) (LYS95) [view usage] : d.83.1.1 |Aha1/BPI domain-like |Bactericidal permeability-increasing protein, BPI |Bactericidal permeability-increasing protein, BPI |Bactericidal permeability-increasing protein, BPI |Human (Homo sapiens) [TaxId: 9606]
d1ewfa1 : (PHE97) (SER147) [view usage] : d.83.1.1 |Aha1/BPI domain-like |Bactericidal permeability-increasing protein, BPI |Bactericidal permeability-increasing protein, BPI |Bactericidal permeability-increasing protein, BPI |Human (Homo sapiens) [TaxId: 9606]
d3tqyb_ : (GLY77) (MSE111) [view usage] : b.40.4.0 |OB-fold |Nucleic acid-binding proteins |automated matches |automated matches |Coxiella burnetii [TaxId: 777]
d1oj4a1 : (MSE1) (PHE34) [view usage] : d.14.1.5 |Ribosomal protein S5 domain 2-like |Ribosomal protein S5 domain 2-like |GHMP Kinase, N-terminal domain |4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase IspE |Escherichia coli [TaxId: 562]
d3m1wa_ : (PRO46) (GLY82) [view usage] : b.74.1.1 |Carbonic anhydrase |Carbonic anhydrase |Carbonic anhydrase |Carbonic anhydrase |Human (Homo sapiens), erythrocytes, isozyme II [TaxId: 9606]
d3gcfa2 : (GLY209) (GLU242) [view usage] : d.129.3.0 |TBP-like |Bet v1-like |automated matches |automated matches |Nocardioides aromaticivorans [TaxId: 200618]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
b.74, d.129, f.4, b.40, d.14, b.2, b.1, d.17, b.77, d.15, d.227, d.113, g.17, i.20, d.83, d.22, b.111