Tableau information
Concept source: d1l1oa_ amino acid (a.a.) range (VAL25)(LEU55)
nSSEs in this Concept: 4
String of secondary struct.elems. (SSEs) defining this concept: EEEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(VAL25) (GLY29) E1
(GLU32) (THR37) E2
(LYS39) (SER44) E3
(LYS49) (LEU55) E4
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 -112.2° E2
E3 69.8° 167.9° E3
E4 -116.6° -29.4° 161.3°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±8.1° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1urcc_ : (ASN3) (ARG36) [view usage] : d.144.1.7 |Protein kinase-like (PK-like) |Protein kinase-like (PK-like) |Protein kinases, catalytic subunit |Cyclin-dependent PK, CDK2 |Human (Homo sapiens) [TaxId: 9606]
d2fbeb_ : (PRO6) (PRO58) [view usage] : b.29.1.22 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |SPRY domain |Similar to Ret finger protein-like 1 |Human (Homo sapiens) [TaxId: 9606]
d1otca1 : (GLN50) (ALA104) [view usage] : b.40.4.3 |OB-fold |Nucleic acid-binding proteins |Single strand DNA-binding domain, SSB |Telomere end binding protein alpha subunit |Oxytricha nova [TaxId: 200597]
d1j1ba_ : (ASP49) (LEU88) [view usage] : d.144.1.7 |Protein kinase-like (PK-like) |Protein kinase-like (PK-like) |Protein kinases, catalytic subunit |Glycogen synthase kinase-3 beta (Gsk3b) |Human (Homo sapiens) [TaxId: 9606]
d1jb7a1 : (GLN50) (ALA104) [view usage] : b.40.4.3 |OB-fold |Nucleic acid-binding proteins |Single strand DNA-binding domain, SSB |Telomere end binding protein alpha subunit |Oxytricha nova [TaxId: 200597]
d2pi2g_ : (VAL25) (LEU55) [view usage] : b.40.4.3 |OB-fold |Nucleic acid-binding proteins |Single strand DNA-binding domain, SSB |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2pqac_ : (VAL74) (ASP109) [view usage] : b.40.4.3 |OB-fold |Nucleic acid-binding proteins |Single strand DNA-binding domain, SSB |Replication protein A 32 KDa subunit (RPA32) fragment |Human (Homo sapiens) [TaxId: 9606]
d2abwb_ : (ARG154) (VAL194) [view usage] : c.23.16.0 |Flavodoxin-like |Class I glutamine amidotransferase-like |automated matches |automated matches |Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
d2nqva1 : (LEU327) (THR365) [view usage] : b.85.6.1 |beta-clip |MoeA C-terminal domain-like |MoeA C-terminal domain-like |Molybdenum cofactor biosynthesis protein MoeA, C-terminal domain |Escherichia coli [TaxId: 562]
d1bcpf_ : (PRO3) (ASP44) [view usage] : b.40.2.1 |OB-fold |Bacterial enterotoxins |Bacterial AB5 toxins, B-subunits |Pertussis toxin S5 subunit |Bordetella pertussis [TaxId: 520]
d2atza1 : (SER14) (ASN42) [view usage] : d.264.1.3 |Prim-pol domain |Prim-pol domain |HP0184-like |Hypothetical protein HP0184 |Helicobacter pylori [TaxId: 210]
d2f5tx1 : (GLU287) (GLY320) [view usage] : b.38.5.1 |Sm-like fold |TrmB C-terminal domain-like |TrmB C-terminal domain-like |Transcriptional regulator TrmB |Thermococcus litoralis [TaxId: 2265]
d2eifa2 : (ILE74) (GLU101) [view usage] : b.40.4.5 |OB-fold |Nucleic acid-binding proteins |Cold shock DNA-binding domain-like |C-terminal domain of eukaryotic initiation translation factor 5a (eIF5a) |Methanococcus jannaschii [TaxId: 2190]
d1l1oa_ : (VAL25) (LEU55) [view usage] : b.40.4.3 |OB-fold |Nucleic acid-binding proteins |Single strand DNA-binding domain, SSB |Replication protein A 14 KDa (RPA14) subunit |Human (Homo sapiens) [TaxId: 9606]
d1nrka1 : (ALA247) (LEU280) [view usage] : b.44.2.1 |Elongation factor/aminomethyltransferase common domain |Aminomethyltransferase beta-barrel domain |Aminomethyltransferase beta-barrel domain |Hypothetical protein YgfZ, C-terminal domain |Escherichia coli [TaxId: 562]
d1mjea5 : (CYS2988) (PHE3024) [view usage] : b.40.4.3 |OB-fold |Nucleic acid-binding proteins |Single strand DNA-binding domain, SSB |OB-fold domains of BRCA2 |Mouse (Mus musculus) [TaxId: 10090]
d3pgzb_ : (ASN6) (PHE60) [view usage] : b.40.4.0 |OB-fold |Nucleic acid-binding proteins |automated matches |automated matches |Bartonella henselae [TaxId: 38323]
d3d31a1 : (PHE230) (ALA257) [view usage] : b.40.6.3 |OB-fold |MOP-like |ABC-transporter additional domain |Sulfate/molybdate ABC transporter, ATP-binding protein |Methanosarcina acetivorans [TaxId: 2214]
d2kola_ : (ARG12) (CYS50) [view usage] : d.9.1.1 |IL8-like |Interleukin 8-like chemokines |Interleukin 8-like chemokines |Stromal cell-derived factor-1 (SDF-1) |Human (Homo sapiens) [TaxId: 9606]
d1y14d1 : (GLY84) (THR111) [view usage] : b.40.4.5 |OB-fold |Nucleic acid-binding proteins |Cold shock DNA-binding domain-like |C-terminal domain of RNA polymerase II subunit RBP7 (RpoE) |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1lm0a_ : (ARG59) (ASP97) [view usage] : b.40.9.1 |OB-fold |Heme chaperone CcmE |Heme chaperone CcmE |Heme chaperone CcmE |Shewanella putrefaciens [TaxId: 24]
d1h9ra2 : (ASP200) (THR232) [view usage] : b.40.6.2 |OB-fold |MOP-like |BiMOP, duplicated molybdate-binding domain |C-terminal domain of molybdate-dependent transcriptional regulator ModE |Escherichia coli [TaxId: 562]
d3kdfc_ : (VAL25) (MSE56) [view usage] : b.40.4.3 |OB-fold |Nucleic acid-binding proteins |Single strand DNA-binding domain, SSB |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1bvsa3 : (PHE3) (ASN29) [view usage] : b.40.4.2 |OB-fold |Nucleic acid-binding proteins |DNA helicase RuvA subunit, N-terminal domain |DNA helicase RuvA subunit, N-terminal domain |Mycobacterium leprae [TaxId: 1769]
d1ph1a1 : (GLN50) (ALA104) [view usage] : b.40.4.3 |OB-fold |Nucleic acid-binding proteins |Single strand DNA-binding domain, SSB |Telomere end binding protein alpha subunit |Oxytricha nova [TaxId: 200597]
d2cqaa1 : (GLU12) (ASP49) [view usage] : b.40.4.14 |OB-fold |Nucleic acid-binding proteins |TIP49 domain |RuvB-like 2 protein, RUVBL2 (TIP49b) |Human (Homo sapiens) [TaxId: 9606]
d1h9sa2 : (ASP200) (THR232) [view usage] : b.40.6.2 |OB-fold |MOP-like |BiMOP, duplicated molybdate-binding domain |C-terminal domain of molybdate-dependent transcriptional regulator ModE |Escherichia coli [TaxId: 562]
d3fpqb_ : (ARG31) (GLN65) [view usage] : d.144.1.7 |Protein kinase-like (PK-like) |Protein kinase-like (PK-like) |Protein kinases, catalytic subunit |Protein kinase wnk1 |Human (Homo sapiens) [TaxId: 9606]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
b.29, c.23, d.144, b.40, b.85, b.38, d.264, d.9, b.44