Tableau information
Concept source: d1uc6a_ amino acid (a.a.) range (THR67)(THR104)
nSSEs in this Concept: 4
String of secondary struct.elems. (SSEs) defining this concept: EEEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(THR67) (THR72) E1
(LYS78) (ASP88) E2
(GLY92) (ASP96) E3
(SER98) (THR104) E4
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 149.7° E2
E3 -62.7° 143.4° E3
E4 -38.4° 149.6° -62.1°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±13.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1udxa2 : (HIS181) (ILE215) [view usage] : c.37.1.8 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |G proteins |Obg GTP-binding protein middle domain |Thermus thermophilus [TaxId: 274]
d4kzoa_ : (ALA141) (GLU174) [view usage] : c.77.1.1 |Isocitrate/Isopropylmalate dehydrogenase-like |Isocitrate/Isopropylmalate dehydrogenase-like |Dimeric isocitrate & isopropylmalate dehydrogenases |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1l3wa5 : (THR492) (SER531) [view usage] : b.1.6.1 |Immunoglobulin-like beta-sandwich |Cadherin-like |Cadherin |C-cadherin ectodomain |African clawed frog (Xenopus laevis) [TaxId: 8355]
d2d3qa1 : (PRO385) (LYS423) [view usage] : d.58.4.14 |Ferredoxin-like |Dimeric alpha+beta barrel |Dyp-type peroxidase-like |Decolorizing peroxidase DyP |Geotrichum candidum [TaxId: 27317]
d3m2la_ : (GLY223) (SER278) [view usage] : f.6.1.1 |Leukocidin-like |Leukocidin-like |Leukocidin (pore-forming toxin) |Alpha-hemolysin |Staphylococcus aureus [TaxId: 1280]
d1g0yr1 : (LYS7) (PRO68) [view usage] : b.1.1.4 |Immunoglobulin-like beta-sandwich |Immunoglobulin |I set domains |Type-1 interleukin-1 receptor |Human (Homo sapiens) [TaxId: 9606]
d3bz1o_ : (ALA228) (PRO271) [view usage] : f.4.1.4 |Transmembrane beta-barrels |OMPA-like |PsbO-like |automated matches |Thermosynechococcus elongatus [TaxId: 32046]
d3qmlb2 : (GLN239) (ASP270) [view usage] : c.55.1.0 |Ribonuclease H-like motif |Actin-like ATPase domain |automated matches |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1euta2 : (SER565) (ARG602) [view usage] : b.18.1.1 |Galactose-binding domain-like |Galactose-binding domain-like |Galactose-binding domain |Sialidase, C-terminal domain |Micromonospora viridifaciens [TaxId: 1881]
d1i94q_ : (LYS4) (PRO47) [view usage] : b.40.4.5 |OB-fold |Nucleic acid-binding proteins |Cold shock DNA-binding domain-like |Ribosomal protein S17 |Thermus thermophilus [TaxId: 274]
d1uy1a_ : (SER118) (PHE141) [view usage] : b.18.1.10 |Galactose-binding domain-like |Galactose-binding domain-like |Family 6 carbohydrate binding module, CBM6 |Putative xylanase |Clostridium stercorarium [TaxId: 1510]
d1ltle_ : (ARG116) (LEU164) [view usage] : b.40.4.11 |OB-fold |Nucleic acid-binding proteins |DNA replication initiator (cdc21/cdc54) N-terminal domain |DNA replication initiator (cdc21/cdc54) N-terminal domain |Methanobacterium thermoautotrophicum [TaxId: 145262]
d1h4sa2 : (PRO193) (GLU234) [view usage] : d.104.1.1 |Class II aaRS and biotin synthetases |Class II aaRS and biotin synthetases |Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain |Prolyl-tRNA synthetase (ProRS) |Thermus thermophilus [TaxId: 274]
d3qrda_ : (ASP65) (ASP119) [view usage] : d.17.1.2 |Cystatin-like |Cystatin/monellin |Cystatins |Cystatin C |Human (Homo sapiens) [TaxId: 9606]
d1lnsa2 : (ILE715) (ILE758) [view usage] : b.18.1.13 |Galactose-binding domain-like |Galactose-binding domain-like |PepX C-terminal domain-like |X-Prolyl dipeptidyl aminopeptidase PepX |Lactococcus lactis [TaxId: 1358]
d3lpwa1 : (THR62) (ALA99) [view usage] : b.1.2.0 |Immunoglobulin-like beta-sandwich |Fibronectin type III |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3ef8a1 : (LEU93) (ASP136) [view usage] : d.17.4.28 |Cystatin-like |NTF2-like |BaiE/LinA-like |Uncharacterized protein Saro1465 |Novosphingobium aromaticivorans [TaxId: 48935]
d2ce6a1 : (TYR69) (GLU99) [view usage] : b.154.1.1 |HPA-like |Agglutinin HPA-like |Agglutinin HPA-like |Agglutinin HPA |Roman snail (Helix pomatia) [TaxId: 6536]
d3zvxa_ : (SER62) (PRO103) [view usage] : b.29.1.1 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Legume lectins |automated matches |Platypodium elegans [TaxId: 115002]
d1jzdc_ : (ALA19) (HIS52) [view usage] : b.1.17.1 |Immunoglobulin-like beta-sandwich |Thiol:disulfide interchange protein DsbD, N-terminal domain (DsbD-alpha) |Thiol:disulfide interchange protein DsbD, N-terminal domain (DsbD-alpha) |Thiol:disulfide interchange protein DsbD, N-terminal domain (DsbD-alpha) |Escherichia coli [TaxId: 562]
d1r4ca_ : (ASP65) (ASP119) [view usage] : d.17.1.2 |Cystatin-like |Cystatin/monellin |Cystatins |Cystatin C |Human (Homo sapiens) [TaxId: 9606]
d1wf5a1 : (PRO24) (GLY82) [view usage] : b.1.2.1 |Immunoglobulin-like beta-sandwich |Fibronectin type III |Fibronectin type III |Sidekick 2 |Human (Homo sapiens) [TaxId: 9606]
d1mvqa_ : (ALA176) (PHE212) [view usage] : b.29.1.1 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Legume lectins |Legume lectin |Cratylia mollis, isoform 1 [TaxId: 252530]
d2je9a_ : (ALA179) (ASN218) [view usage] : b.29.1.1 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Legume lectins |automated matches |Mucana (Dioclea grandiflora) [TaxId: 3837]
d1nc7d_ : (SER80) (GLU114) [view usage] : b.123.1.1 |Hypothetical protein TM1070 |Hypothetical protein TM1070 |Hypothetical protein TM1070 |Hypothetical protein TM1070 |Thermotoga maritima [TaxId: 2336]
d1q55a_ : (THR492) (SER531) [view usage] : i.20.1.1 |Ep-cadherin |Ep-cadherin |Ep-cadherin |Ep-cadherin |Mouse (Mus musculus) [TaxId: 10090]
d1e4kc1 : (SER51) (ILE85) [view usage] : b.1.1.4 |Immunoglobulin-like beta-sandwich |Immunoglobulin |I set domains |Fc gamma receptor ectodomain (CD32) |Human (Homo sapiens), III [TaxId: 9606]
d1umzb_ : (GLY42) (ALA73) [view usage] : b.29.1.2 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Glycosyl hydrolases family 16 |Xyloglucan endotransglycosylase |European aspen (Populus tremula) [TaxId: 113636]
d1pn4c2 : (GLU238) (VAL274) [view usage] : d.38.1.4 |Thioesterase/thiol ester dehydrase-isomerase |Thioesterase/thiol ester dehydrase-isomerase |MaoC-like |2-enoyl-coa hydratase domain of multifunctional peroxisomal hydratase-dehydrogenase-epimerase |Yeast (Candida tropicalis) [TaxId: 5482]
d1v4sa1 : (LEU75) (SER109) [view usage] : c.55.1.3 |Ribonuclease H-like motif |Actin-like ATPase domain |Hexokinase |Glucokinase |Human (Homo sapiens) [TaxId: 9606]
d1f00i1 : (THR661) (THR700) [view usage] : b.1.14.1 |Immunoglobulin-like beta-sandwich |Invasin/intimin cell-adhesion fragments |Invasin/intimin cell-adhesion fragments |Intimin |Escherichia coli [TaxId: 562]
d2cgya_ : (TYR69) (GLU99) [view usage] : b.154.1.1 |HPA-like |Agglutinin HPA-like |Agglutinin HPA-like |automated matches |Roman snail (Helix pomatia) [TaxId: 6536]
d2b1xb1 : (LEU627) (LEU665) [view usage] : d.17.4.4 |Cystatin-like |NTF2-like |Ring hydroxylating beta subunit |Naphthalene 1,2-dioxygenase beta subunit |Rhodococcus sp. ncimb12038 [TaxId: 92694]
d3bb9f_ : (GLY118) (SER147) [view usage] : d.17.4.16 |Cystatin-like |NTF2-like |SO0125-like |Uncharacterized protein Sfri1973 |Shewanella frigidimarina [TaxId: 56812]
d2q3za1 : (PHE39) (VAL92) [view usage] : b.1.18.9 |Immunoglobulin-like beta-sandwich |E set domains |Transglutaminase N-terminal domain |Transglutaminase N-terminal domain |Human (Homo sapiens), tissue isozyme [TaxId: 9606]
d3h1vx1 : (GLY72) (SER109) [view usage] : c.55.1.3 |Ribonuclease H-like motif |Actin-like ATPase domain |Hexokinase |Glucokinase |Human (Homo sapiens) [TaxId: 9606]
d2o28b_ : (ASP83) (SER125) [view usage] : d.108.1.0 |Acyl-CoA N-acyltransferases (Nat) |Acyl-CoA N-acyltransferases (Nat) |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3pjqa1 : (GLY111) (LYS160) [view usage] : b.68.1.1 |6-bladed beta-propeller |Sialidases |Sialidases (neuraminidases) |automated matches |Trypanosoma cruzi [TaxId: 5693]
d3s67a_ : (VAL66) (ASP119) [view usage] : d.17.1.2 |Cystatin-like |Cystatin/monellin |Cystatins |Cystatin C |Human (Homo sapiens) [TaxId: 9606]
d2ccva1 : (TYR69) (GLU99) [view usage] : b.154.1.1 |HPA-like |Agglutinin HPA-like |Agglutinin HPA-like |Agglutinin HPA |Roman snail (Helix pomatia) [TaxId: 6536]
d2ixia_ : (MET1) (ARG33) [view usage] : b.82.1.1 |Double-stranded beta-helix |RmlC-like cupins |dTDP-sugar isomerase |dTDP-4-dehydrorhamnose 3,5-epimerase RmlC |Pseudomonas aeruginosa [TaxId: 287]
d1u14a_ : (PHE71) (PRO107) [view usage] : c.51.4.3 |Anticodon-binding domain-like |ITPase-like |YjjX-like |Hypothetical protein YjjX |Salmonella typhimurium [TaxId: 90371]
d3ps8a_ : (ASP65) (ASP119) [view usage] : d.17.1.2 |Cystatin-like |Cystatin/monellin |Cystatins |Cystatin C |Human (Homo sapiens) [TaxId: 9606]
d1s0ia2 : (GLY111) (LYS160) [view usage] : b.68.1.1 |6-bladed beta-propeller |Sialidases |Sialidases (neuraminidases) |Trypanosoma sialidase |Trypanosoma cruzi [TaxId: 5693]
d1lsha2 : (GLY21) (TYR73) [view usage] : f.7.1.1 |Lipovitellin-phosvitin complex; beta-sheet shell regions |Lipovitellin-phosvitin complex; beta-sheet shell regions |Lipovitellin-phosvitin complex; beta-sheet shell regions |Lipovitellin-phosvitin complex; beta-sheet shell regions |Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]
d1g8jd_ : (ALA90) (GLY123) [view usage] : b.33.1.1 |ISP domain |ISP domain |Rieske iron-sulfur protein (ISP) |Arsenite oxidase Rieske subunit |Alcaligenes faecalis [TaxId: 511]
d1p9ma3 : (SER260) (THR299) [view usage] : b.1.2.1 |Immunoglobulin-like beta-sandwich |Fibronectin type III |Fibronectin type III |Cytokine receptor gp130 cytokine-binding domains |Human (Homo sapiens) [TaxId: 9606]
d1rxta2 : (ILE311) (THR356) [view usage] : d.108.1.2 |Acyl-CoA N-acyltransferases (Nat) |Acyl-CoA N-acyltransferases (Nat) |N-myristoyl transferase, NMT |N-myristoyl transferase, NMT |Human (Homo sapiens) [TaxId: 9606]
d3jv4b_ : (PHE307) (PRO349) [view usage] : b.1.18.0 |Immunoglobulin-like beta-sandwich |E set domains |automated matches |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d2djsa1 : (ASN63) (THR99) [view usage] : b.1.2.1 |Immunoglobulin-like beta-sandwich |Fibronectin type III |Fibronectin type III |Ephrin type-B receptor 1 |Human (Homo sapiens) [TaxId: 9606]
d1j1la_ : (SER4) (ARG49) [view usage] : b.82.1.12 |Double-stranded beta-helix |RmlC-like cupins |Pirin-like |Pirin |Human (Homo sapiens) [TaxId: 9606]
d1hk6a_ : (PRO7) (CYS62) [view usage] : b.1.18.18 |Immunoglobulin-like beta-sandwich |E set domains |Other IPT/TIG domains |Exocyst complex component Sec5, Ral-binding domain |Mouse (Mus musculus) [TaxId: 10090]
d1g8jb_ : (ALA90) (GLY123) [view usage] : b.33.1.1 |ISP domain |ISP domain |Rieske iron-sulfur protein (ISP) |Arsenite oxidase Rieske subunit |Alcaligenes faecalis [TaxId: 511]
d3q6fa2 : (ASN128) (THR162) [view usage] : b.1.1.2 |Immunoglobulin-like beta-sandwich |Immunoglobulin |C1 set domains (antibody constant domain-like) |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3zvxb_ : (SER62) (PRO103) [view usage] : b.29.1.1 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Legume lectins |automated matches |Platypodium elegans [TaxId: 115002]
d2k6da_ : (ILE297) (PRO328) [view usage] : b.34.2.0 |SH3-like barrel |SH3-domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1pn2d2 : (GLU238) (VAL274) [view usage] : d.38.1.4 |Thioesterase/thiol ester dehydrase-isomerase |Thioesterase/thiol ester dehydrase-isomerase |MaoC-like |2-enoyl-coa hydratase domain of multifunctional peroxisomal hydratase-dehydrogenase-epimerase |Yeast (Candida tropicalis) [TaxId: 5482]
d4n68a_ : (SER933) (THR968) [view usage] : b.1.2.0 |Immunoglobulin-like beta-sandwich |Fibronectin type III |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2e4pa_ : (GLY54) (GLY95) [view usage] : b.33.1.1 |ISP domain |ISP domain |Rieske iron-sulfur protein (ISP) |automated matches |Pseudomonas sp. [TaxId: 306]
d2d3pa_ : (TYR175) (PHE212) [view usage] : b.29.1.1 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Legume lectins |automated matches |Cratylia argentea [TaxId: 83131]
d1amxa_ : (SER274) (ASN318) [view usage] : b.2.3.1 |Common fold of diphtheria toxin/transcription factors/cytochrome f |Bacterial adhesins |Collagen-binding domain of adhesin |Collagen-binding domain of adhesin |Staphylococcus aureus [TaxId: 1280]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
b.68, b.82, d.58, b.29, c.77, f.4, b.40, c.37, d.104, c.55, b.18, b.2, b.1, d.108, d.17, d.38, c.51, b.34, i.20, b.33,
b.123, f.7, f.6, b.154