Tableau information
Concept source: d1t9ha1 amino acid (a.a.) range (GLY12)(GLU62)
nSSEs in this Concept: 4
String of secondary struct.elems. (SSEs) defining this concept: EEEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(GLY12) (LEU17) E1
(ASP24) (ARG30) E2
(TYR50) (ASN54) E3
(GLU57) (GLU62) E4
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 161.4° E2
E3 -85.6° 100.7° E3
E4 81.8° -86.6° 159.0°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±10.1° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1hcda_ : (HIS33) (HIS66) [view usage] : b.42.5.2 |beta-Trefoil |Actin-crosslinking proteins |Histidine-rich actin-binding protein (hisactophilin) |Histidine-rich actin-binding protein (hisactophilin) |Slime mold (Dictyostelium discoideum) [TaxId: 44689]
d1uasa1 : (SER325) (ASN362) [view usage] : b.71.1.1 |Glycosyl hydrolase domain |Glycosyl hydrolase domain |alpha-Amylases, C-terminal beta-sheet domain |Melibiase |Rice (Oryza sativa) [TaxId: 4530]
d1buca2 : (THR142) (ILE189) [view usage] : e.6.1.1 |Acyl-CoA dehydrogenase NM domain-like |Acyl-CoA dehydrogenase NM domain-like |Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains |Butyryl-CoA dehydrogenase, NM domains |Megasphaera elsdenii [TaxId: 907]
d4nf8b_ : (LEU9) (GLY61) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Norway rat (Rattus norvegicus) [TaxId: 10116]
d1yloa1 : (GLY67) (ASP114) [view usage] : b.49.3.1 |Domain of alpha and beta subunits of F1 ATP synthase-like |Aminopeptidase/glucanase lid domain |Aminopeptidase/glucanase lid domain |Aminopeptidase YpdE |Shigella flexneri [TaxId: 623]
d2p39a_ : (ARG114) (PRO147) [view usage] : b.42.1.0 |beta-Trefoil |Cytokine |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1xhba1 : (LEU505) (ASP539) [view usage] : b.42.2.1 |beta-Trefoil |Ricin B-like lectins |Ricin B-like |Polypeptide N-acetylgalactosaminyltransferase 1, C-terminal domain |Mouse (Mus musculus) [TaxId: 10090]
d1vs5q1 : (ILE20) (ARG76) [view usage] : b.40.4.5 |OB-fold |Nucleic acid-binding proteins |Cold shock DNA-binding domain-like |Ribosomal protein S17 |Escherichia coli [TaxId: 562]
d1qtua_ : (ASP13) (GLN48) [view usage] : b.63.1.1 |Oncogene products |Oncogene products |Oncogene products |p13-MTCP1 |Human (Homo sapiens) [TaxId: 9606]
d4jwxa_ : (SER10) (GLY61) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Norway rat (Rattus norvegicus) [TaxId: 10116]
d3j6vl_ : (ARG78) (GLY128) [view usage] : i.1.1.3 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Small subunit |Eukaryotic, mitochondrial (28S subunit) |Cow (Bos taurus) [TaxId: 9913]
d1gh9a_ : (MET1) (LYS33) [view usage] : g.41.6.1 |Rubredoxin-like |Hypothetical protein MTH1184 |Hypothetical protein MTH1184 |Hypothetical protein MTH1184 |Methanobacterium thermoautotrophicum [TaxId: 145262]
d2dvla1 : (ALA137) (LYS181) [view usage] : e.6.1.0 |Acyl-CoA dehydrogenase NM domain-like |Acyl-CoA dehydrogenase NM domain-like |automated matches |automated matches |Thermus thermophilus [TaxId: 300852]
d1ueba2 : (GLU78) (PRO125) [view usage] : b.40.4.5 |OB-fold |Nucleic acid-binding proteins |Cold shock DNA-binding domain-like |Elongation factor P middle and C-terminal domains |Thermus thermophilus HB8 [TaxId: 300852]
d2bjra1 : (PHE118) (GLY154) [view usage] : b.169.1.1 |MFPT repeat-like |MFPT repeat-like |MFPT repeat |Sperm motility protein MFP2 |Pig roundworm (Ascaris suum), isoform B [TaxId: 6253]
d2viga1 : (THR168) (LEU214) [view usage] : e.6.1.1 |Acyl-CoA dehydrogenase NM domain-like |Acyl-CoA dehydrogenase NM domain-like |Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3swob1 : (THR157) (LEU198) [view usage] : e.6.1.0 |Acyl-CoA dehydrogenase NM domain-like |Acyl-CoA dehydrogenase NM domain-like |automated matches |automated matches |Mycobacterium smegmatis [TaxId: 246196]
d2bjqa1 : (PRO298) (GLY333) [view usage] : b.169.1.1 |MFPT repeat-like |MFPT repeat-like |MFPT repeat |Sperm motility protein MFP2 |Pig roundworm (Ascaris suum), isoform A [TaxId: 6253]
d1siqa2 : (THR149) (LYS196) [view usage] : e.6.1.1 |Acyl-CoA dehydrogenase NM domain-like |Acyl-CoA dehydrogenase NM domain-like |Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains |Glutaryl-CoA dehydrogenase GCDH |Human (Homo sapiens) [TaxId: 9606]
d2rsta_ : (GLN44) (GLN73) [view usage] : b.42.2.1 |beta-Trefoil |Ricin B-like lectins |Ricin B-like |29-kDa galactose-binding lectin |Common earthworm (Lumbricus terrestris) [TaxId: 6398]
d3gqtc1 : (THR152) (LYS200) [view usage] : e.6.1.0 |Acyl-CoA dehydrogenase NM domain-like |Acyl-CoA dehydrogenase NM domain-like |automated matches |automated matches |Burkholderia pseudomallei [TaxId: 320372]
d1b4ma_ : (LEU37) (LYS99) [view usage] : b.60.1.2 |Lipocalins |Lipocalins |Fatty acid binding protein-like |Cellular retinol-binding protein II (CRBP) |Norway rat (Rattus norvegicus) [TaxId: 10116]
d3j38l_ : (ILE83) (LYS141) [view usage] : i.1.1.1 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Ribosome complexes |Eukaryotic, cytoplasmic (80S ribosome functional complex) |Drosophila melanogaster [TaxId: 7227]
d3sf6a1 : (THR160) (ASP205) [view usage] : e.6.1.0 |Acyl-CoA dehydrogenase NM domain-like |Acyl-CoA dehydrogenase NM domain-like |automated matches |automated matches |Mycobacterium smegmatis [TaxId: 246196]
d1ck7a3 : (VAL220) (PRO275) [view usage] : g.14.1.2 |Kringle-like |Kringle-like |Fibronectin type II module |Gelatinase A (MMP-2) type II modules |Human (Homo sapiens) [TaxId: 9606]
d1egca2 : (THR149) (ILE198) [view usage] : e.6.1.1 |Acyl-CoA dehydrogenase NM domain-like |Acyl-CoA dehydrogenase NM domain-like |Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains |Medium chain acyl-CoA dehydrogenase, NM domains |Human (Homo sapiens) [TaxId: 9606]
d2xzmy_ : (GLY54) (ILE101) [view usage] : i.1.1.3 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Small subunit |Eukaryotic, cytoplasmic (40S subunit) |Tetrahymena thermophila [TaxId: 5911]
d4as7a_ : (PHE154) (LYS197) [view usage] : c.37.1.9 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Motor proteins |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3r7kc1 : (THR160) (ASN209) [view usage] : e.6.1.0 |Acyl-CoA dehydrogenase NM domain-like |Acyl-CoA dehydrogenase NM domain-like |automated matches |automated matches |Mycobacterium abscessus [TaxId: 561007]
d2id0a2 : (GLY88) (MSE132) [view usage] : b.40.4.5 |OB-fold |Nucleic acid-binding proteins |Cold shock DNA-binding domain-like |Exoribonuclease 2, RNB |Escherichia coli [TaxId: 562]
d1ixda_ : (SER22) (VAL82) [view usage] : b.34.10.1 |SH3-like barrel |Cap-Gly domain |Cap-Gly domain |Cylindromatosis tumour-suppressor Cyld |Human (Homo sapiens) [TaxId: 9606]
d1gvme_ : (ALA282) (LYS318) [view usage] : b.109.1.1 |beta-hairpin stack |Cell wall binding repeat |Cell wall binding repeat |Choline binding domain of autolysin C-LytA |Pneumococcus (Streptococcus pneumoniae) [TaxId: 1313]
d1rwra_ : (GLN37) (GLY90) [view usage] : b.80.1.11 |Single-stranded right-handed beta-helix |Pectin lyase-like |Filamentous hemagglutinin FhaB, secretion domain |Filamentous hemagglutinin FhaB, secretion domain |Bordetella pertussis [TaxId: 520]
d4hr3a1 : (ALA159) (ASP212) [view usage] : e.6.1.0 |Acyl-CoA dehydrogenase NM domain-like |Acyl-CoA dehydrogenase NM domain-like |automated matches |automated matches |Mycobacterium abscessus [TaxId: 561007]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
b.80, c.94, i.1, b.40, c.37, e.6, b.60, b.42, b.34, b.109, b.71, b.49, g.41, b.169, g.14, b.63