Tableau information
Concept source: d2acob_ amino acid (a.a.) range (LEU104)(ARG143)
nSSEs in this Concept: 4
String of secondary struct.elems. (SSEs) defining this concept: EEEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(LEU104) (PHE109) E1
(PHE112) (VAL118) E2
(LEU129) (PRO133) E3
(TYR137) (ARG143) E4
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 144.9° E2
E3 -63.9° 149.0° E3
E4 104.1° -53.8° 149.5°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±8.8° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d3ncua_ : (PRO848) (ILE889) [view usage] : b.88.2.1 |Mss4-like |RIG-I C-terminal-like |RIG-I C-terminal domain-like |RIG-I C-terminal domain |Human (Homo sapiens) [TaxId: 9606]
d3biax_ : (TYR62) (ARG111) [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d1cywa_ : (GLY146) (ILE176) [view usage] : b.6.1.2 |Cupredoxin-like |Cupredoxins |Periplasmic domain of cytochrome c oxidase subunit II |Quinol oxidase (CyoA) |Escherichia coli [TaxId: 562]
d4dhla1 : (MET74) (PRO120) [view usage] : b.1.12.0 |Immunoglobulin-like beta-sandwich |Purple acid phosphatase, N-terminal domain |automated matches |automated matches |French bean (Phaseolus vulgaris) [TaxId: 3885]
d3k4pa_ : (PHE380) (ALA417) [view usage] : c.60.1.2 |Phosphoglycerate mutase-like |Phosphoglycerate mutase-like |Histidine acid phosphatase |Phytase (myo-inositol-hexakisphosphate-3-phosphohydrolase) |Aspergillus niger [TaxId: 5061]
d2m06a_ : (GLY84) (PHE148) [view usage] : f.4.1.1 |Transmembrane beta-barrels |OMPA-like |Outer membrane protein |Outer membrane protein X (OMPX) |Escherichia coli [TaxId: 562]
d1om9a_ : (THR578) (PRO631) [view usage] : b.1.10.2 |Immunoglobulin-like beta-sandwich |Clathrin adaptor appendage domain |gamma-adaptin C-terminal appendage domain-like |ADP-ribosylation factor binding protein Gga1 domain |Human (Homo sapiens) [TaxId: 9606]
d4oita_ : (ARG13) (TRP44) [view usage] : b.78.1.0 |beta-Prism II |alpha-D-mannose-specific plant lectins |automated matches |automated matches |Mycobacterium smegmatis [TaxId: 246196]
d1o75a1 : (SER284) (LEU332) [view usage] : b.1.20.1 |Immunoglobulin-like beta-sandwich |Tp47 lipoprotein, middle and C-terminal domains |Tp47 lipoprotein, middle and C-terminal domains |Tp47 lipoprotein, middle and C-terminal domains |Treponema pallidum [TaxId: 160]
d3bu7b_ : (LEU257) (VAL300) [view usage] : b.82.1.23 |Double-stranded beta-helix |RmlC-like cupins |Gentisate 1,2-dioxygenase-like |Gentisate 1,2-dioxygenase |Silicibacter pomeroyi [TaxId: 89184]
d1fhoa_ : (ASP14) (LEU59) [view usage] : b.55.1.1 |PH domain-like barrel |PH domain-like |Pleckstrin-homology domain (PH domain) |UNC-89 |Nematode (Caenorhabditis elegans) [TaxId: 6239]
d2ohha1 : (ASP133) (ASN169) [view usage] : d.157.1.0 |Metallo-hydrolase/oxidoreductase |Metallo-hydrolase/oxidoreductase |automated matches |automated matches |Methanothermobacter thermautotrophicus [TaxId: 145262]
d2p4oa1 : (SER74) (LEU110) [view usage] : b.68.6.3 |6-bladed beta-propeller |Calcium-dependent phosphotriesterase |All0351-like |Hypothetical protein All0351 homologue |Nostoc punctiforme [TaxId: 272131]
d1pjwa_ : (ASN22) (THR65) [view usage] : b.1.18.4 |Immunoglobulin-like beta-sandwich |E set domains |Class II viral fusion proteins C-terminal domain |Envelope glycoprotein |Japanese encephalitis virus [TaxId: 11072]
d1d2oa2 : (GLY678) (TYR719) [view usage] : b.3.5.1 |Prealbumin-like |Cna protein B-type domain |Cna protein B-type domain |B repeat unit of collagen binding surface protein (cna) |Staphylococcus aureus [TaxId: 1280]
d2orxa1 : (ALA378) (CYS424) [view usage] : b.18.1.2 |Galactose-binding domain-like |Galactose-binding domain-like |Discoidin domain (FA58C, coagulation factor 5/8 C-terminal domain) |B1 domain of neuropilin-1 |Norway rat (Rattus norvegicus) [TaxId: 10116]
d2h1ta1 : (LEU131) (ASP172) [view usage] : b.178.1.1 |Spiral beta-roll |PA1994-like |PA1994-like |Hypothetical protein PA1994 |Pseudomonas aeruginosa [TaxId: 287]
d1c9ub_ : (SER353) (PHE401) [view usage] : b.68.2.1 |6-bladed beta-propeller |Soluble quinoprotein glucose dehydrogenase |Soluble quinoprotein glucose dehydrogenase |Soluble quinoprotein glucose dehydrogenase |Acinetobacter calcoaceticus [TaxId: 471]
d1i1ra1 : (GLN56) (SER100) [view usage] : b.1.2.1 |Immunoglobulin-like beta-sandwich |Fibronectin type III |Fibronectin type III |Cytokine receptor gp130 cytokine-binding domains |Human (Homo sapiens) [TaxId: 9606]
d2p97b_ : (GLY102) (GLY135) [view usage] : d.157.1.12 |Metallo-hydrolase/oxidoreductase |Metallo-hydrolase/oxidoreductase |Ava3068-like |Hypothetical protein Ava3068 |Anabaena variabilis [TaxId: 1172]
d1wp5a_ : (GLY193) (LEU239) [view usage] : b.68.10.1 |6-bladed beta-propeller |GyrA/ParC C-terminal domain-like |GyrA/ParC C-terminal domain-like |Topoisomerase IV subunit A, ParC, C-terminal domain |Bacillus stearothermophilus [TaxId: 1422]
d1ei5a1 : (GLY348) (VAL382) [view usage] : b.61.3.1 |Streptavidin-like |D-aminopeptidase, middle and C-terminal domains |D-aminopeptidase, middle and C-terminal domains |D-aminopeptidase, middle and C-terminal domains |Ochrobactrum anthropi [TaxId: 529]
d1ilda_ : (TYR42) (THR124) [view usage] : f.4.2.1 |Transmembrane beta-barrels |Outer membrane phospholipase A (OMPLA) |Outer membrane phospholipase A (OMPLA) |Outer membrane phospholipase A (OMPLA) |Escherichia coli [TaxId: 562]
d1s1qc_ : (ILE59) (GLY100) [view usage] : d.20.1.2 |UBC-like |UBC-like |UEV domain |Tumor susceptibility gene 101 (TSG101) |Human (Homo sapiens) [TaxId: 9606]
d1eqwc_ : (ASN2) (VAL45) [view usage] : b.1.8.1 |Immunoglobulin-like beta-sandwich |Cu,Zn superoxide dismutase-like |Cu,Zn superoxide dismutase-like |Cu,Zn superoxide dismutase, SOD |Salmonella typhimurium [TaxId: 90371]
d1occb1 : (ASP139) (ILE175) [view usage] : b.6.1.2 |Cupredoxin-like |Cupredoxins |Periplasmic domain of cytochrome c oxidase subunit II |Cytochrome c oxidase |Cow (Bos taurus) [TaxId: 9913]
d2xt9b_ : (ILE86) (ASN121) [view usage] : b.26.1.0 |SMAD/FHA domain |SMAD/FHA domain |automated matches |automated matches |Mycobacterium smegmatis [TaxId: 246196]
d1m9wa_ : (LYS59) (GLU98) [view usage] : b.6.1.1 |Cupredoxin-like |Cupredoxins |Plastocyanin/azurin-like |Plastocyanin |Synechocystis sp. PCC 6803 [TaxId: 1148]
d1pgsa2 : (ASN172) (GLY227) [view usage] : b.121.1.1 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |PHM/PNGase F |Glycosyl-asparaginase |Peptide:N-glycosidase F, PNGase F |Flavobacterium meningosepticum [TaxId: 238]
d1m9sa1 : (ASP275) (LEU319) [view usage] : b.1.18.15 |Immunoglobulin-like beta-sandwich |E set domains |Internalin Ig-like domain |Internalin B |Listeria monocytogenes [TaxId: 1639]
d2wo1b_ : (ASP87) (ALA150) [view usage] : b.18.1.4 |Galactose-binding domain-like |Galactose-binding domain-like |Ephrin receptor ligand binding domain |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1w5ch_ : (GLY342) (PRO382) [view usage] : i.5.1.1 |Photosystems |Photosystems |Photosystems |Photosystem II |Thermosynechococcus vulcanus [TaxId: 32053]
d2h1tb_ : (LEU131) (ASP172) [view usage] : b.178.1.1 |Spiral beta-roll |PA1994-like |PA1994-like |Hypothetical protein PA1994 |Pseudomonas aeruginosa [TaxId: 287]
d2r73b_ : (ASN53) (ASN92) [view usage] : b.60.1.0 |Lipocalins |Lipocalins |automated matches |automated matches |Trichosurus vulpecula [TaxId: 9337]
d2ge4a_ : (GLY99) (GLY171) [view usage] : f.4.1.1 |Transmembrane beta-barrels |OMPA-like |Outer membrane protein |Outer membrane protein A (OMPA) transmembrane domain |Escherichia coli [TaxId: 562]
d1bzoa_ : (LEU4) (ILE45) [view usage] : b.1.8.1 |Immunoglobulin-like beta-sandwich |Cu,Zn superoxide dismutase-like |Cu,Zn superoxide dismutase-like |Cu,Zn superoxide dismutase, SOD |Photobacterium leiognathi [TaxId: 553611]
d1nbxb_ : (GLY19) (ALA63) [view usage] : b.61.1.1 |Streptavidin-like |Avidin/streptavidin |Avidin/streptavidin |Streptavidin |Streptomyces avidinii [TaxId: 1895]
d2m5ca_ : (THR131) (GLY167) [view usage] : d.157.1.1 |Metallo-hydrolase/oxidoreductase |Metallo-hydrolase/oxidoreductase |Zn metallo-beta-lactamase |Zn metallo-beta-lactamase |Bacillus cereus [TaxId: 1396]
d2dwxc_ : (ILE512) (ASN557) [view usage] : b.1.10.2 |Immunoglobulin-like beta-sandwich |Clathrin adaptor appendage domain |gamma-adaptin C-terminal appendage domain-like |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1wfma_ : (GLU75) (SER133) [view usage] : b.7.1.2 |C2 domain-like |C2 domain (Calcium/lipid-binding domain, CaLB) |Synaptotagmin-like (S variant) |Synaptotagmin XIII |Human (Homo sapiens) [TaxId: 9606]
d2kkia_ : (VAL52) (GLU94) [view usage] : b.42.1.2 |beta-Trefoil |Cytokine |Interleukin-1 (IL-1) |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3vuab_ : (LYS602) (GLN653) [view usage] : b.1.28.0 |Immunoglobulin-like beta-sandwich |NEAT domain-like |automated matches |automated matches |Staphylococcus aureus [TaxId: 158879]
d1gff2_ : (ASN44) (ALA96) [view usage] : b.121.5.1 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |ssDNA viruses |Microviridae-like VP |Microvirus capsid proteins |Bacteriophage G4 [TaxId: 10843]
d1uena_ : (ARG66) (ASN115) [view usage] : b.1.2.1 |Immunoglobulin-like beta-sandwich |Fibronectin type III |Fibronectin type III |KIAA0343 protein |Human (Homo sapiens) [TaxId: 9606]
d3rurd_ : (GLN400) (ASP450) [view usage] : b.1.28.0 |Immunoglobulin-like beta-sandwich |NEAT domain-like |automated matches |automated matches |Staphylococcus aureus [TaxId: 158879]
d2wo2a_ : (THR147) (PHE200) [view usage] : b.18.1.4 |Galactose-binding domain-like |Galactose-binding domain-like |Ephrin receptor ligand binding domain |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1gydb_ : (ASP38) (PHE75) [view usage] : b.67.2.1 |5-bladed beta-propeller |Arabinanase/levansucrase/invertase |alpha-L-arabinanase-like |alpha-L-arabinanase |Cellvibrio cellulosa [TaxId: 155077]
d1kexa_ : (PRO106) (GLY151) [view usage] : b.18.1.2 |Galactose-binding domain-like |Galactose-binding domain-like |Discoidin domain (FA58C, coagulation factor 5/8 C-terminal domain) |B1 domain of neuropilin-1 |Human (Homo sapiens) [TaxId: 9606]
d1vhpa_ : (PHE68) (VAL115) [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |Immunoglobulin heavy chain variable domain, VH |Engineered (including hybrid species)
d4eq2a2 : (GLU152) (ILE207) [view usage] : b.1.2.0 |Immunoglobulin-like beta-sandwich |Fibronectin type III |automated matches |automated matches |Chicken (Gallus gallus) [TaxId: 9031]
d1cdia1 : (LYS2) (SER60) [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |CD4 V-set domains |Human (Homo sapiens) [TaxId: 9606]
d1pd6a_ : (ILE261) (GLU301) [view usage] : b.1.1.4 |Immunoglobulin-like beta-sandwich |Immunoglobulin |I set domains |Cardiac myosin binding protein C, different domains |Human (Homo sapiens) [TaxId: 9606]
d1gkab_ : (LYS61) (GLU107) [view usage] : b.60.1.1 |Lipocalins |Lipocalins |Retinol binding protein-like |Alpha-crustacyanin |European lobster (Homarus gammarus) [TaxId: 6707]
d2qc2b_ : (GLY146) (GLY183) [view usage] : b.47.1.4 |Trypsin-like serine proteases |Trypsin-like serine proteases |Viral cysteine protease of trypsin fold |Coronavirus main proteinase (3Cl-pro, putative coronavirus nsp2) |SARS coronavirus [TaxId: 227859]
d2jmma_ : (ALA86) (ARG149) [view usage] : f.4.1.1 |Transmembrane beta-barrels |OMPA-like |Outer membrane protein |Outer membrane protein A (OMPA) transmembrane domain |Escherichia coli [TaxId: 562]
d1xm8a_ : (GLY94) (GLY130) [view usage] : d.157.1.2 |Metallo-hydrolase/oxidoreductase |Metallo-hydrolase/oxidoreductase |Glyoxalase II (hydroxyacylglutathione hydrolase) |Glyoxalase II (hydroxyacylglutathione hydrolase) |Thale cress (Arabidopsis thaliana) [TaxId: 3702]
d3amra_ : (LEU234) (ASP275) [view usage] : b.68.3.1 |6-bladed beta-propeller |Thermostable phytase (3-phytase) |Thermostable phytase (3-phytase) |automated matches |Bacillus subtilis [TaxId: 1423]
d2fr2a1 : (ASP113) (ARG164) [view usage] : b.60.1.8 |Lipocalins |Lipocalins |Rv2717c-like |Hypothetical protein Rv2717c |Mycobacterium tuberculosis [TaxId: 1773]
d3sqza2 : (PHE352) (LYS387) [view usage] : c.95.1.0 |Thiolase-like |Thiolase-like |automated matches |automated matches |Streptococcus mutans [TaxId: 1309]
d2vpja_ : (ALA372) (GLY410) [view usage] : b.68.11.0 |6-bladed beta-propeller |Kelch motif |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1d2pa4 : (GLY865) (TYR906) [view usage] : b.3.5.1 |Prealbumin-like |Cna protein B-type domain |Cna protein B-type domain |B repeat unit of collagen binding surface protein (cna) |Staphylococcus aureus [TaxId: 1280]
d1im0a_ : (TYR42) (GLN117) [view usage] : f.4.2.1 |Transmembrane beta-barrels |Outer membrane phospholipase A (OMPLA) |Outer membrane phospholipase A (OMPLA) |Outer membrane phospholipase A (OMPLA) |Escherichia coli [TaxId: 562]
d1w93a3 : (PRO286) (PRO333) [view usage] : d.142.1.2 |ATP-grasp |Glutathione synthetase ATP-binding domain-like |BC ATP-binding domain-like |Acetyl-CoA carboxylase, BC-M subdomain |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d4oy7a_ : (PRO177) (ASP228) [view usage] : b.1.18.0 |Immunoglobulin-like beta-sandwich |E set domains |automated matches |automated matches |Streptomyces coelicolor [TaxId: 100226]
d2lw8a_ : (GLU126) (PRO179) [view usage] : b.18.1.4 |Galactose-binding domain-like |Galactose-binding domain-like |Ephrin receptor ligand binding domain |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2e7db_ : (LYS69) (GLN120) [view usage] : b.1.28.0 |Immunoglobulin-like beta-sandwich |NEAT domain-like |automated matches |automated matches |Staphylococcus aureus [TaxId: 158879]
d1ykka_ : (PHE92) (PHE145) [view usage] : b.3.6.1 |Prealbumin-like |Aromatic compound dioxygenase |Aromatic compound dioxygenase |Protocatechuate-3,4-dioxygenase, alpha chain |Pseudomonas putida [TaxId: 303]
d1plca_ : (ASP61) (ASN99) [view usage] : b.6.1.1 |Cupredoxin-like |Cupredoxins |Plastocyanin/azurin-like |Plastocyanin |Poplar (Populus nigra), variant italica [TaxId: 3691]
d1a2va3 : (VAL151) (PRO209) [view usage] : d.17.2.1 |Cystatin-like |Amine oxidase N-terminal region |Amine oxidase N-terminal region |Copper amine oxidase, domains 1 and 2 |Yeast (Hansenula polymorpha) [TaxId: 4905]
d1w5cb_ : (GLY342) (PRO382) [view usage] : i.5.1.1 |Photosystems |Photosystems |Photosystems |Photosystem II |Thermosynechococcus vulcanus [TaxId: 32053]
d4l0pa_ : (ASN85) (ASP149) [view usage] : b.18.1.4 |Galactose-binding domain-like |Galactose-binding domain-like |Ephrin receptor ligand binding domain |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3pnra_ : (GLY180) (CYS229) [view usage] : d.3.1.1 |Cysteine proteinases |Cysteine proteinases |Papain-like |Falcipain 2 |Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
d1eqwb_ : (ASN2) (VAL45) [view usage] : b.1.8.1 |Immunoglobulin-like beta-sandwich |Cu,Zn superoxide dismutase-like |Cu,Zn superoxide dismutase-like |Cu,Zn superoxide dismutase, SOD |Salmonella typhimurium [TaxId: 90371]
d1ilr1_ : (GLU43) (ALA82) [view usage] : b.42.1.2 |beta-Trefoil |Cytokine |Interleukin-1 (IL-1) |Interleukin-1 receptor antagonist protein |Human (Homo sapiens) [TaxId: 9606]
d1eqwa_ : (ASN2) (VAL45) [view usage] : b.1.8.1 |Immunoglobulin-like beta-sandwich |Cu,Zn superoxide dismutase-like |Cu,Zn superoxide dismutase-like |Cu,Zn superoxide dismutase, SOD |Salmonella typhimurium [TaxId: 90371]
d3umnb_ : (ILE432) (GLY468) [view usage] : b.1.16.0 |Immunoglobulin-like beta-sandwich |Lamin A/C globular tail domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
b.68, b.82, b.67, b.47, d.157, f.4, c.95, b.60, b.18, b.121, d.3, i.5, c.60, b.6, b.1, d.20, b.42, d.17, b.55, d.142,
b.26, b.61, b.7, b.3, b.88, b.178, b.78