Tableau information
Concept source: d2ns9a1 amino acid (a.a.) range (GLU76)(GLY124)
nSSEs in this Concept: 4
String of secondary struct.elems. (SSEs) defining this concept: EEEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(GLU76) (LYS80) E1
(SER82) (ALA93) E2
(SER95) (PRO107) E3
(GLY111) (GLY124) E4
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 -139.5° E2
E3 19.4° 158.5° E3
E4 -172.3° -32.8° 168.0°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±7.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d3j39h_ : (ILE4) (ARG36) [view usage] : i.1.1.1 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Ribosome complexes |Eukaryotic, cytoplasmic (80S ribosome functional complex) |Drosophila melanogaster [TaxId: 7227]
d3j39h_ : (GLY85) (GLU125) [view usage] : i.1.1.1 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Ribosome complexes |Eukaryotic, cytoplasmic (80S ribosome functional complex) |Drosophila melanogaster [TaxId: 7227]
d4a17e_ : (LEU4) (ALA37) [view usage] : i.1.1.2 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Large subunit |Eukaryotic, cytoplasmic (60S subunit) |Tetrahymena thermophila [TaxId: 5911]
d4a17e_ : (GLY85) (ALA126) [view usage] : i.1.1.2 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Large subunit |Eukaryotic, cytoplasmic (60S subunit) |Tetrahymena thermophila [TaxId: 5911]
d1ytia_ : (ARG8) (ILE50) [view usage] : b.50.1.1 |Acid proteases |Acid proteases |Retroviral protease (retropepsin) |Simian immunodeficiency virus (SIV) protease |Simian immunodeficiency virus, different strains [TaxId: 11723]
d4jhia_ : (ASP71) (GLY124) [view usage] : d.129.3.0 |TBP-like |Bet v1-like |automated matches |automated matches |Medicago truncatula [TaxId: 3880]
d1s1ih_ : (GLU7) (ASN37) [view usage] : i.1.1.1 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Ribosome complexes |Eukaryotic, cytoplasmic (80S ribosome functional complex) |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d2zkre1 : (GLY87) (ARG127) [view usage] : i.1.1.1 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Ribosome complexes |Eukaryotic, cytoplasmic (80S ribosome functional complex) |Dog (Canis familiaris) [TaxId: 9615]
d3d5bh2 : (TYR83) (GLU119) [view usage] : d.141.1.1 |Ribosomal protein L6 |Ribosomal protein L6 |Ribosomal protein L6 |Ribosomal protein L6 |Thermus thermophilus [TaxId: 274]
d2ns9a1 : (GLU76) (GLY124) [view usage] : d.129.3.10 |TBP-like |Bet v1-like |CoxG-like |Hypothetical protein APE2225 |Aeropyrum pernix [TaxId: 56636]
d1vs6g2 : (PHE82) (LEU116) [view usage] : d.141.1.1 |Ribosomal protein L6 |Ribosomal protein L6 |Ribosomal protein L6 |Ribosomal protein L6 |Escherichia coli [TaxId: 562]
d1giyh_ : (PRO7) (ARG34) [view usage] : i.1.1.1 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Ribosome complexes |70S ribosome functional complex |Thermus thermophilus [TaxId: 274]
d1uzzc_ : (THR54) (VAL126) [view usage] : b.29.1.1 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Legume lectins |Legume lectin |Cockspur coral tree (Erythrina crista-galli) [TaxId: 49817]
d1xuva_ : (HIS90) (PHE136) [view usage] : d.129.3.5 |TBP-like |Bet v1-like |AHSA1 domain |Hypothetical protein MM0500 |Methanosarcina mazei [TaxId: 2209]
d3uida_ : (THR81) (ALA131) [view usage] : d.129.3.0 |TBP-like |Bet v1-like |automated matches |automated matches |Mycobacterium smegmatis [TaxId: 246196]
d1xbpe1 : (ILE85) (PRO118) [view usage] : d.141.1.1 |Ribosomal protein L6 |Ribosomal protein L6 |Ribosomal protein L6 |Ribosomal protein L6 |Deinococcus radiodurans [TaxId: 1299]
d4gy9a_ : (ASP71) (GLY124) [view usage] : d.129.3.0 |TBP-like |Bet v1-like |automated matches |automated matches |Medicago truncatula [TaxId: 3880]
d1vsaf2 : (TYR83) (GLU119) [view usage] : d.141.1.1 |Ribosomal protein L6 |Ribosomal protein L6 |Ribosomal protein L6 |Ribosomal protein L6 |Thermus thermophilus [TaxId: 274]
d1rl6a1 : (PRO7) (ARG34) [view usage] : d.141.1.1 |Ribosomal protein L6 |Ribosomal protein L6 |Ribosomal protein L6 |Ribosomal protein L6 |Bacillus stearothermophilus [TaxId: 1422]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
i.1, b.29, b.50, d.129, d.141