Tableau information
Concept source: d1hmra_ amino acid (a.a.) range (LEU91)(LYS130)
nSSEs in this Concept: 4
String of secondary struct.elems. (SSEs) defining this concept: EEEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(LEU91) (TRP97) E1
(GLY99) (LEU108) E2
(LEU113) (HIS119) E3
(THR121) (LYS130) E4
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 165.8° E2
E3 -23.1° 165.6° E3
E4 138.8° -32.1° 161.6°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±6.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d3d9wc_ : (ARG221) (ALA253) [view usage] : d.3.1.0 |Cysteine proteinases |Cysteine proteinases |automated matches |automated matches |Nocardia farcinica [TaxId: 37329]
d4btjb_ : (ILE64) (LEU98) [view usage] : d.144.1.0 |Protein kinase-like (PK-like) |Protein kinase-like (PK-like) |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3p73a1 : (PHE0) (PRO45) [view usage] : d.19.1.0 |MHC antigen-recognition domain |MHC antigen-recognition domain |automated matches |automated matches |Chicken (Gallus gallus) [TaxId: 9031]
d1frgh2 : (LYS339) (PHE390) [view usage] : b.1.1.2 |Immunoglobulin-like beta-sandwich |Immunoglobulin |C1 set domains (antibody constant domain-like) |Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma |Mouse (Mus musculus) [TaxId: 10090]
d1iwma_ : (ASP127) (ASP171) [view usage] : b.125.1.2 |LolA-like prokaryotic lipoproteins and lipoprotein localization factors |Prokaryotic lipoproteins and lipoprotein localization factors |Outer membrane lipoprotein receptor LolB |Outer membrane lipoprotein receptor LolB |Escherichia coli [TaxId: 562]
d4fqxa1 : (GLU4) (LEU45) [view usage] : d.19.1.0 |MHC antigen-recognition domain |MHC antigen-recognition domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d4n0fa1 : (HIS4) (GLY49) [view usage] : d.19.1.1 |MHC antigen-recognition domain |MHC antigen-recognition domain |MHC antigen-recognition domain |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1zt4c2 : (PRO9) (LYS51) [view usage] : d.19.1.1 |MHC antigen-recognition domain |MHC antigen-recognition domain |MHC antigen-recognition domain |CD1, alpha-1 and alpha-2 domains |Human (Homo sapiens), CD1a [TaxId: 9606]
d3dcxc_ : (ASN30) (SER68) [view usage] : b.55.1.13 |PH domain-like barrel |PH domain-like |BPHL domain |Uncharacterized protein Shew0819 |Shewanella loihica [TaxId: 359303]
d1je6a2 : (GLY86) (PRO130) [view usage] : d.19.1.1 |MHC antigen-recognition domain |MHC antigen-recognition domain |MHC antigen-recognition domain |Class I MHC homolog |Human (Homo sapiens), Mic-b [TaxId: 9606]
d1r5va2 : (GLU4) (ARG44) [view usage] : d.19.1.1 |MHC antigen-recognition domain |MHC antigen-recognition domain |MHC antigen-recognition domain |Class II MHC alpha chain, N-terminal domain |Mouse (Mus musculus), I-EK [TaxId: 10090]
d3nsga_ : (GLY133) (ASN192) [view usage] : f.4.3.1 |Transmembrane beta-barrels |Porins |Porin |automated matches |Salmonella enterica [TaxId: 527001]
d4ozfb1 : (PHE7) (THR51) [view usage] : d.19.1.0 |MHC antigen-recognition domain |MHC antigen-recognition domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1p4pa_ : (SER157) (GLY194) [view usage] : b.76.1.1 |open-sided beta-meander |Outer surface protein |Outer surface protein |Outer surface protein B |Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]
d1po3a_ : (LYS633) (ASN707) [view usage] : f.4.3.3 |Transmembrane beta-barrels |Porins |Ligand-gated protein channel |Outer membrane transporter FecA |Escherichia coli [TaxId: 562]
d1c9ub_ : (GLN231) (GLY264) [view usage] : b.68.2.1 |6-bladed beta-propeller |Soluble quinoprotein glucose dehydrogenase |Soluble quinoprotein glucose dehydrogenase |Soluble quinoprotein glucose dehydrogenase |Acinetobacter calcoaceticus [TaxId: 471]
d1xq4a_ : (TYR11) (GLY70) [view usage] : b.1.23.1 |Immunoglobulin-like beta-sandwich |ApaG-like |ApaG-like |ApaG |Bordetella pertussis [TaxId: 520]
d1zxqa2 : (LEU45) (TYR85) [view usage] : b.1.1.4 |Immunoglobulin-like beta-sandwich |Immunoglobulin |I set domains |Intercellular adhesion molecule-2, ICAM-2 |Human (Homo sapiens) [TaxId: 9606]
d3j6vp_ : (HIS16) (ASN69) [view usage] : i.1.1.3 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Small subunit |Eukaryotic, mitochondrial (28S subunit) |Cow (Bos taurus) [TaxId: 9913]
d3t8xc1 : (PHE10) (LYS51) [view usage] : d.19.1.1 |MHC antigen-recognition domain |MHC antigen-recognition domain |MHC antigen-recognition domain |CD1, alpha-1 and alpha-2 domains |Human (Homo sapiens), CD1b [TaxId: 9606]
d1itva_ : (ASP10) (PRO41) [view usage] : b.66.1.1 |4-bladed beta-propeller |Hemopexin-like domain |Hemopexin-like domain |Gelatinase B (MMP-9) |Human (Homo sapiens) [TaxId: 9606]
d1cjdb1 : (VAL42) (LEU87) [view usage] : b.121.2.1 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Group II dsDNA viruses VP |Coat protein p3 |Coat protein p3 |Bacteriophage PRD1 [TaxId: 10658]
d1ghfh2 : (THR118) (PHE168) [view usage] : b.1.1.2 |Immunoglobulin-like beta-sandwich |Immunoglobulin |C1 set domains (antibody constant domain-like) |Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma |Mouse (Mus musculus) [TaxId: 10090]
d1d2ha_ : (GLY184) (TYR243) [view usage] : c.66.1.5 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |Glycine N-methyltransferase |Glycine N-methyltransferase |Norway rat (Rattus norvegicus) [TaxId: 10116]
d1a0sp_ : (VAL242) (GLY316) [view usage] : f.4.3.2 |Transmembrane beta-barrels |Porins |Maltoporin-like |Sucrose-specific porin |Salmonella typhimurium [TaxId: 90371]
d3gbla_ : (LYS1) (THR52) [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Ctenopharyngodon idella [TaxId: 7959]
d3grwa2 : (LEU309) (VAL355) [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1qw2a_ : (HIS19) (CYS57) [view usage] : d.249.1.1 |Hypothetical protein Ta1206 |Hypothetical protein Ta1206 |Hypothetical protein Ta1206 |Hypothetical protein Ta1206 |Thermoplasma acidophilum [TaxId: 2303]
d1y8ba_ : (VAL217) (GLU262) [view usage] : c.1.13.1 |TIM beta/alpha-barrel |Malate synthase G |Malate synthase G |Malate synthase G |Escherichia coli [TaxId: 562]
d1utya_ : (LYS54) (THR88) [view usage] : b.147.1.1 |BTV NS2-like ssRNA-binding domain |BTV NS2-like ssRNA-binding domain |BTV NS2-like ssRNA-binding domain |Nonstructural protein NS2 |Bluetongue virus [TaxId: 40051]
d1e2ta_ : (LEU204) (ASN235) [view usage] : d.3.1.5 |Cysteine proteinases |Cysteine proteinases |Arylamine N-acetyltransferase |Arylamine N-acetyltransferase |Salmonella typhimurium [TaxId: 90371]
d3vlaa_ : (PHE178) (SER208) [view usage] : b.50.1.0 |Acid proteases |Acid proteases |automated matches |automated matches |Carrot (Daucus carota) [TaxId: 4039]
d1jk9b1 : (SER78) (ILE133) [view usage] : b.1.8.1 |Immunoglobulin-like beta-sandwich |Cu,Zn superoxide dismutase-like |Cu,Zn superoxide dismutase-like |Copper chaperone for superoxide dismutase, C-terminal domain |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d2cmga_ : (LEU21) (LYS52) [view usage] : c.66.1.0 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |automated matches |automated matches |Helicobacter pylori [TaxId: 85962]
d1ky6a1 : (ASN765) (VAL816) [view usage] : b.1.10.1 |Immunoglobulin-like beta-sandwich |Clathrin adaptor appendage domain |Alpha-adaptin ear subdomain-like |Alpha-adaptin AP2 ear domain, N-terminal subdomain |Mouse (Mus musculus) [TaxId: 10090]
d1vsaf1 : (GLY22) (PRO55) [view usage] : d.141.1.1 |Ribosomal protein L6 |Ribosomal protein L6 |Ribosomal protein L6 |Ribosomal protein L6 |Thermus thermophilus [TaxId: 274]
d3zsea_ : (GLY50) (TRP81) [view usage] : b.29.1.11 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Xylanase/endoglucanase 11/12 |automated matches |Thermobifida fusca [TaxId: 2021]
d4btja_ : (ILE64) (LEU98) [view usage] : d.144.1.0 |Protein kinase-like (PK-like) |Protein kinase-like (PK-like) |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1ygaa_ : (LYS103) (LEU163) [view usage] : b.30.5.0 |Supersandwich |Galactose mutarotase-like |automated matches |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1rm6b1 : (ALA217) (ASP269) [view usage] : d.87.2.1 |CO dehydrogenase flavoprotein C-domain-like |CO dehydrogenase flavoprotein C-terminal domain-like |CO dehydrogenase flavoprotein C-terminal domain-like |4-hydroxybenzoyl-CoA reductase beta subunit HrcB, C-terminal domain |Thauera aromatica [TaxId: 59405]
d1xq4b_ : (TYR11) (GLY70) [view usage] : b.1.23.1 |Immunoglobulin-like beta-sandwich |ApaG-like |ApaG-like |ApaG |Bordetella pertussis [TaxId: 520]
d1a64a_ : (ALA54) (ASP94) [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |CD2, first domain |Norway rat (Rattus norvegicus) [TaxId: 10116]
d1a3lh2 : (LYS115) (PHE174) [view usage] : b.1.1.2 |Immunoglobulin-like beta-sandwich |Immunoglobulin |C1 set domains (antibody constant domain-like) |Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma |Mouse (Mus musculus) [TaxId: 10090]
d1im9a2 : (GLY1) (GLU49) [view usage] : d.19.1.1 |MHC antigen-recognition domain |MHC antigen-recognition domain |MHC antigen-recognition domain |Class I MHC, alpha-1 and alpha-2 domains |Human (Homo sapiens), HLA-CW4 [TaxId: 9606]
d1at0a_ : (PHE312) (PHE345) [view usage] : b.86.1.1 |Hedgehog/intein (Hint) domain |Hedgehog/intein (Hint) domain |Hedgehog C-terminal (Hog) autoprocessing domain |Hedgehog |Fruit fly (Drosophila melanogaster) [TaxId: 7227]
d1lk9a_ : (GLN197) (ASP243) [view usage] : c.67.1.1 |PLP-dependent transferase-like |PLP-dependent transferases |AAT-like |Alliinase |Garlic (Allium sativum) [TaxId: 4682]
d1rl0a_ : (PHE51) (PHE91) [view usage] : d.165.1.1 |Ribosome inactivating proteins (RIP) |Ribosome inactivating proteins (RIP) |Plant cytotoxins |Dianthin 30 |Clove pink (Dianthus caryophyllus) [TaxId: 3570]
d3gmxa_ : (LEU106) (GLN152) [view usage] : d.98.1.0 |BLIP-like |beta-lactamase-inhibitor protein, BLIP |automated matches |automated matches |Streptomyces clavuligerus [TaxId: 1901]
d1ktke1 : (MET46) (VAL79) [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |T-cell antigen receptor |Human (Homo sapiens), beta-chain [TaxId: 9606]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
b.68, c.1, c.67, i.1, b.29, b.30, b.76, c.66, d.165, b.50, f.4, d.144, b.60, b.121, d.3, b.1, b.125, d.98, d.19, b.55,
d.87, b.66, b.86, b.147, d.141, d.249