Tableau information
Concept source: d3pmzd_ amino acid (a.a.) range (PRO28)(TRP60)
nSSEs in this Concept: 4
String of secondary struct.elems. (SSEs) defining this concept: EEEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(PRO28) (GLN38) E1
(GLN38) (ASP44) E2
(ASN48) (VAL53) E3
(TYR54) (TRP60) E4
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 -75.5° E2
E3 95.3° 155.3° E3
E4 158.9° -125.5° -66.3°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±6.9° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d4jqia1 : (ARG51) (GLN85) [view usage] : b.1.18.11 |Immunoglobulin-like beta-sandwich |E set domains |Arrestin/Vps26-like |Arrestin |Norway rat (Rattus norvegicus) [TaxId: 10116]
d4h7mb_ : (LEU200) (ILE224) [view usage] : b.29.1.11 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Xylanase/endoglucanase 11/12 |automated matches |Trichoderma harzianum [TaxId: 5544]
d4mzaa_ : (THR525) (LYS553) [view usage] : b.68.1.1 |6-bladed beta-propeller |Sialidases |Sialidases (neuraminidases) |automated matches |Human parainfluenza 3 virus [TaxId: 11217]
d2afpa_ : (GLY60) (ALA107) [view usage] : d.169.1.1 |C-type lectin-like |C-type lectin-like |C-type lectin domain |Type II antifreeze protein |Sea raven (Hemitripterus americanus) [TaxId: 8094]
d3kmua_ : (GLN192) (GLN213) [view usage] : d.144.1.0 |Protein kinase-like (PK-like) |Protein kinase-like (PK-like) |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1oa3a_ : (LEU193) (ILE217) [view usage] : b.29.1.11 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Xylanase/endoglucanase 11/12 |Family 12 endo-1,4-beta-glucanase (cellulase) catalytic domain |Hypocrea schweinitzii [TaxId: 36924]
d3pt6a4 : (ASP990) (ARG1026) [view usage] : b.34.12.1 |SH3-like barrel |BAH domain |BAH domain |BAH domains from DNA methyltransferase 1 (DNMT1) |Mouse (Mus musculus) [TaxId: 10090]
d2vina_ : (GLU86) (SER110) [view usage] : b.47.1.2 |Trypsin-like serine proteases |Trypsin-like serine proteases |Eukaryotic proteases |automated matches |Human (Homo sapiens) [TaxId: 9606]
d4afga_ : (MET109) (LEU136) [view usage] : b.96.1.0 |Nicotinic receptor ligand binding domain-like |Nicotinic receptor ligand binding domain-like |automated matches |automated matches |Capitella teleta [TaxId: 283909]
d2z76a_ : (ARG72) (PHE99) [view usage] : d.17.4.3 |Cystatin-like |NTF2-like |Ketosteroid isomerase-like |Hypothetical protein Rv0760c |Mycobacterium tuberculosis H37Rv [TaxId: 83332]
d1by5a_ : (GLY510) (THR546) [view usage] : f.4.3.3 |Transmembrane beta-barrels |Porins |Ligand-gated protein channel |Ferric hydroxamate uptake receptor FhuA |Escherichia coli [TaxId: 562]
d3q9za_ : (TYR39) (THR60) [view usage] : d.144.1.7 |Protein kinase-like (PK-like) |Protein kinase-like (PK-like) |Protein kinases, catalytic subunit |Protein kinase CK2, alpha subunit |Human (Homo sapiens) [TaxId: 9606]
d4ffva1 : (LEU110) (ASP134) [view usage] : b.70.3.1 |8-bladed beta-propeller |DPP6 N-terminal domain-like |DPP6 N-terminal domain-like |automated matches |Norway rat (Rattus norvegicus) [TaxId: 10116]
d1crza1 : (SER311) (GLY332) [view usage] : b.68.4.1 |6-bladed beta-propeller |TolB, C-terminal domain |TolB, C-terminal domain |TolB, C-terminal domain |Escherichia coli [TaxId: 562]
d1gzfc_ : (HIS220) (ILE248) [view usage] : d.166.1.1 |ADP-ribosylation |ADP-ribosylation |ADP-ribosylating toxins |Exoenzyme c3 |Clostridium botulinum [TaxId: 1491]
d1g4ma1 : (GLU50) (GLN85) [view usage] : b.1.18.11 |Immunoglobulin-like beta-sandwich |E set domains |Arrestin/Vps26-like |Arrestin |Cow (Bos taurus), beta-arrestin 1 [TaxId: 9913]
d3qbqa_ : (PRO249) (ALA284) [view usage] : b.22.1.1 |TNF-like |TNF-like |TNF-like |TRANCE/RANKL cytokine |Mouse (Mus musculus) [TaxId: 10090]
d2hsxa_ : (THR39) (PRO98) [view usage] : d.346.1.1 |SARS Nsp1-like |SARS Nsp1-like |SARS Nsp1-like |Nsp1 |SARS coronavirus [TaxId: 227859]
d3riqa_ : (SER510) (ALA540) [view usage] : b.80.1.0 |Single-stranded right-handed beta-helix |Pectin lyase-like |automated matches |automated matches |Siphovirus 9na
d1ph6a3 : (ASN472) (TYR495) [view usage] : b.40.4.3 |OB-fold |Nucleic acid-binding proteins |Single strand DNA-binding domain, SSB |Telomere end binding protein alpha subunit |Oxytricha nova [TaxId: 200597]
d3axwa_ : (TYR39) (THR60) [view usage] : d.144.1.7 |Protein kinase-like (PK-like) |Protein kinase-like (PK-like) |Protein kinases, catalytic subunit |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1dyqa1 : (LYS84) (HIS114) [view usage] : b.40.2.2 |OB-fold |Bacterial enterotoxins |Superantigen toxins, N-terminal domain |Staphylococcal enterotoxin A, SEA |Staphylococcus aureus [TaxId: 1280]
d4anma_ : (ASP38) (ASN60) [view usage] : d.144.1.7 |Protein kinase-like (PK-like) |Protein kinase-like (PK-like) |Protein kinases, catalytic subunit |automated matches |Maize (Zea mays) [TaxId: 4577]
d2c7wa_ : (GLU67) (CYS103) [view usage] : g.17.1.0 |Cystine-knot cytokines |Cystine-knot cytokines |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2imld_ : (ALA99) (GLU123) [view usage] : b.45.1.4 |Split barrel-like |FMN-binding split barrel |MTH863-like |Hypothetical protein AF1834 |Archaeoglobus fulgidus [TaxId: 2234]
d2gdta1 : (THR39) (PRO98) [view usage] : d.346.1.1 |SARS Nsp1-like |SARS Nsp1-like |SARS Nsp1-like |Nsp1 |SARS coronavirus [TaxId: 227859]
d1ph1b_ : (LYS86) (GLN126) [view usage] : b.40.4.3 |OB-fold |Nucleic acid-binding proteins |Single strand DNA-binding domain, SSB |Core domain of telomere end binding protein beta subunit |Oxytricha nova [TaxId: 200597]
d1otcb_ : (LYS86) (LEU125) [view usage] : b.40.4.3 |OB-fold |Nucleic acid-binding proteins |Single strand DNA-binding domain, SSB |Core domain of telomere end binding protein beta subunit |Oxytricha nova [TaxId: 200597]
d1lo5d1 : (LYS84) (ASP115) [view usage] : b.40.2.2 |OB-fold |Bacterial enterotoxins |Superantigen toxins, N-terminal domain |Staphylococcal enterotoxin A, SEA |Staphylococcus aureus [TaxId: 1280]
d2xaca_ : (GLU67) (CYS103) [view usage] : g.17.1.0 |Cystine-knot cytokines |Cystine-knot cytokines |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1jb7b_ : (LYS86) (LEU125) [view usage] : b.40.4.3 |OB-fold |Nucleic acid-binding proteins |Single strand DNA-binding domain, SSB |Core domain of telomere end binding protein beta subunit |Oxytricha nova [TaxId: 200597]
d2imla1 : (ALA99) (GLU123) [view usage] : b.45.1.4 |Split barrel-like |FMN-binding split barrel |MTH863-like |Hypothetical protein AF1834 |Archaeoglobus fulgidus [TaxId: 2234]
d2xj0a_ : (TYR38) (SER59) [view usage] : d.144.1.7 |Protein kinase-like (PK-like) |Protein kinase-like (PK-like) |Protein kinases, catalytic subunit |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3sh1d_ : (ASP26) (TRP60) [view usage] : b.96.1.0 |Nicotinic receptor ligand binding domain-like |Nicotinic receptor ligand binding domain-like |automated matches |automated matches |California sea hare (Aplysia californica) [TaxId: 6500]
d3wz1a_ : (VAL132) (ARG158) [view usage] : b.29.1.0 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |automated matches |automated matches |Microbulbifer thermotolerans [TaxId: 252514]
d1zbob_ : (ALA65) (GLY90) [view usage] : b.122.1.10 |PUA domain-like |PUA domain-like |LON domain-like |automated matches |Bordetella parapertussis [TaxId: 257311]
d1zbob_ : (GLY90) (PRO113) [view usage] : b.122.1.10 |PUA domain-like |PUA domain-like |LON domain-like |automated matches |Bordetella parapertussis [TaxId: 257311]
d2xacb_ : (GLU67) (CYS103) [view usage] : g.17.1.0 |Cystine-knot cytokines |Cystine-knot cytokines |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2a78b_ : (SER221) (ILE248) [view usage] : d.166.1.1 |ADP-ribosylation |ADP-ribosylation |ADP-ribosylating toxins |Exoenzyme c3 |Clostridium botulinum [TaxId: 1491]
d2r83a1 : (LYS354) (GLY379) [view usage] : b.7.1.2 |C2 domain-like |C2 domain (Calcium/lipid-binding domain, CaLB) |Synaptotagmin-like (S variant) |Synaptogamin I |Human (Homo sapiens) [TaxId: 9606]
d1i4ga1 : (VAL85) (ASP115) [view usage] : b.40.2.2 |OB-fold |Bacterial enterotoxins |Superantigen toxins, N-terminal domain |Staphylococcal enterotoxin A, SEA |Staphylococcus aureus [TaxId: 1280]
d2x1la1 : (ASP120) (GLU160) [view usage] : c.26.1.0 |Adenine nucleotide alpha hydrolase-like |Nucleotidylyl transferase |automated matches |automated matches |Mycobacterium smegmatis [TaxId: 246196]
d2byrb_ : (ASP26) (TRP60) [view usage] : b.96.1.0 |Nicotinic receptor ligand binding domain-like |Nicotinic receptor ligand binding domain-like |automated matches |automated matches |California sea hare (Aplysia californica) [TaxId: 6500]
d1ph2a3 : (ASN472) (ILE494) [view usage] : b.40.4.3 |OB-fold |Nucleic acid-binding proteins |Single strand DNA-binding domain, SSB |Telomere end binding protein alpha subunit |Oxytricha nova [TaxId: 200597]
d4afha_ : (MET109) (LEU136) [view usage] : b.96.1.0 |Nicotinic receptor ligand binding domain-like |Nicotinic receptor ligand binding domain-like |automated matches |automated matches |Capitella teleta [TaxId: 283909]
d2ckfb_ : (THR131) (LEU160) [view usage] : d.17.4.0 |Cystatin-like |NTF2-like |automated matches |automated matches |Sphingomonas sp. [TaxId: 279135]
d2qjja2 : (VAL350) (GLU376) [view usage] : c.1.11.0 |TIM beta/alpha-barrel |Enolase C-terminal domain-like |automated matches |automated matches |Novosphingobium aromaticivorans [TaxId: 48935]
d1jb7a3 : (ASN472) (TYR495) [view usage] : b.40.4.3 |OB-fold |Nucleic acid-binding proteins |Single strand DNA-binding domain, SSB |Telomere end binding protein alpha subunit |Oxytricha nova [TaxId: 200597]
d1p35a_ : (ASN238) (ASP272) [view usage] : b.28.1.1 |Baculovirus p35 protein |Baculovirus p35 protein |Baculovirus p35 protein |Baculovirus p35 protein |AcMNPV (Autographa californica nuclear polyhedrosis virus) [TaxId: 46015]
d3mg1a2 : (ASN247) (THR275) [view usage] : d.17.4.0 |Cystatin-like |NTF2-like |automated matches |automated matches |Synechocystis sp. [TaxId: 1148]
d3uzpa_ : (ARG8) (ALA30) [view usage] : d.144.1.7 |Protein kinase-like (PK-like) |Protein kinase-like (PK-like) |Protein kinases, catalytic subunit |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1z01a2 : (GLY241) (GLU276) [view usage] : d.129.3.3 |TBP-like |Bet v1-like |Ring hydroxylating alpha subunit catalytic domain |2-oxo-1,2-dihydroquinoline 8-monooxygenase, oxygenase component OxoO |Pseudomonas putida [TaxId: 303]
d3mg1b2 : (ASN247) (THR275) [view usage] : d.17.4.0 |Cystatin-like |NTF2-like |automated matches |automated matches |Synechocystis sp. [TaxId: 1148]
d4f4ra2 : (VAL351) (GLU378) [view usage] : c.1.11.0 |TIM beta/alpha-barrel |Enolase C-terminal domain-like |automated matches |automated matches |Chromohalobacter salexigens [TaxId: 290398]
d2xrxb_ : (GLN144) (LEU174) [view usage] : d.17.4.4 |Cystatin-like |NTF2-like |Ring hydroxylating beta subunit |automated matches |Burkholderia xenovorans [TaxId: 266265]
d1kxla_ : (GLY119) (PRO146) [view usage] : b.40.4.3 |OB-fold |Nucleic acid-binding proteins |Single strand DNA-binding domain, SSB |CDC13 ssDNA-binding domain |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1zgha1 : (TYR203) (GLY226) [view usage] : b.46.1.1 |FMT C-terminal domain-like |FMT C-terminal domain-like |Post formyltransferase domain |Methionyl-tRNAfmet formyltransferase, C-terminal domain |Clostridium thermocellum [TaxId: 1515]
d1oa2a_ : (LEU193) (ILE217) [view usage] : b.29.1.11 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Xylanase/endoglucanase 11/12 |Family 12 endo-1,4-beta-glucanase (cellulase) catalytic domain |Trichoderma reesei, Cel12A [TaxId: 51453]
d1bqqt_ : (TYR1084) (PRO1106) [view usage] : b.40.3.1 |OB-fold |TIMP-like |Tissue inhibitor of metalloproteinases, TIMP |TIMP-2 |Cow (Bos taurus) [TaxId: 9913]
d4h7ma_ : (LEU200) (ILE224) [view usage] : b.29.1.11 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Xylanase/endoglucanase 11/12 |automated matches |Trichoderma harzianum [TaxId: 5544]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
b.68, b.80, b.70, c.1, b.29, c.26, b.47, d.129, f.4, d.144, b.40, d.166, d.169, b.122, b.1, b.45, b.96, d.17, b.22, b.34,
b.7, g.17, b.28, b.46, d.346