Tableau information
Concept source: d1hzva2 amino acid (a.a.) range (ARG225)(ARG267)
nSSEs in this Concept: 4
String of secondary struct.elems. (SSEs) defining this concept: EEEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(ARG225) (SER230) E1
(TYR239) (TYR245) E2
(GLN249) (ASP254) E3
(LYS261) (ARG267) E4
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 160.1° E2
E3 -37.7° 162.2° E3
E4 130.7° -30.1° 163.7°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±9.4° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d2b5la4 : (LYS408) (GLU445) [view usage] : b.69.4.3 |7-bladed beta-propeller |WD40 repeat-like |DDB1-like |DDB1 |Human (Homo sapiens) [TaxId: 9606]
d3biax_ : (ASP4) (ASP50) [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d2a1kb_ : (GLU30) (GLU75) [view usage] : b.40.4.7 |OB-fold |Nucleic acid-binding proteins |Phage ssDNA-binding proteins |automated matches |Enterobacteria phage [TaxId: 12353]
d3o8xb_ : (GLN6) (SER52) [view usage] : b.1.1.2 |Immunoglobulin-like beta-sandwich |Immunoglobulin |C1 set domains (antibody constant domain-like) |beta2-microglobulin |Mouse (Mus musculus) [TaxId: 10090]
d1ug9a4 : (GLU21) (THR55) [view usage] : b.30.5.5 |Supersandwich |Galactose mutarotase-like |Bacterial glucoamylase N-terminal domain-like |Glucodextranase, domain N |Arthrobacter globiformis [TaxId: 1665]
d1utca2 : (ASP69) (THR103) [view usage] : b.69.6.1 |7-bladed beta-propeller |Clathrin heavy-chain terminal domain |Clathrin heavy-chain terminal domain |Clathrin heavy-chain terminal domain |Norway rat (Rattus norvegicus) [TaxId: 10116]
d2gsye_ : (LEU229) (ALA275) [view usage] : b.121.4.9 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Positive stranded ssRNA viruses |Birnaviridae-like VP |automated matches |Infectious bursal disease virus [TaxId: 10995]
d3ac0a1 : (THR30) (PRO65) [view usage] : c.1.8.7 |TIM beta/alpha-barrel |(Trans)glycosidases |NagZ-like |Beta-glucosidase |Kluyveromyces marxianus [TaxId: 4911]
d2ogfa_ : (TYR65) (VAL116) [view usage] : d.316.1.0 |MK0786-like |MK0786-like |automated matches |automated matches |Methanocaldococcus jannaschii [TaxId: 2190]
d4n7ua_ : (CYS357) (ASP407) [view usage] : b.29.1.0 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1c39a_ : (THR83) (PRO130) [view usage] : b.64.1.1 |Mannose 6-phosphate receptor domain |Mannose 6-phosphate receptor domain |Mannose 6-phosphate receptor domain |Cation-dependent mannose 6-phosphate receptor, extracytoplasmic domain |Cow (Bos taurus) [TaxId: 9913]
d2x89e_ : (MET6) (ASP53) [view usage] : b.1.1.2 |Immunoglobulin-like beta-sandwich |Immunoglobulin |C1 set domains (antibody constant domain-like) |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1fbla1 : (ASP285) (PHE316) [view usage] : b.66.1.1 |4-bladed beta-propeller |Hemopexin-like domain |Hemopexin-like domain |Collagenase (MMP1), C-terminal domain |Pig (Sus scrofa) [TaxId: 9823]
d2x89d_ : (MET6) (SER52) [view usage] : b.1.1.2 |Immunoglobulin-like beta-sandwich |Immunoglobulin |C1 set domains (antibody constant domain-like) |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3sepa5 : (HIS735) (GLY771) [view usage] : b.30.5.0 |Supersandwich |Galactose mutarotase-like |automated matches |automated matches |Escherichia coli K-12 [TaxId: 83333]
d1i3ra2 : (GLU4) (ARG44) [view usage] : d.19.1.1 |MHC antigen-recognition domain |MHC antigen-recognition domain |MHC antigen-recognition domain |Class II MHC alpha chain, N-terminal domain |Mouse (Mus musculus), I-EK [TaxId: 10090]
d1q25a3 : (TYR317) (GLY361) [view usage] : b.64.1.1 |Mannose 6-phosphate receptor domain |Mannose 6-phosphate receptor domain |Mannose 6-phosphate receptor domain |Cation-independent mannose-6-phosphate receptor (MIR-receptor) |Cow (Bos taurus) [TaxId: 9913]
d4q7ga_ : (ALA27) (ALA81) [view usage] : f.6.1.1 |Leukocidin-like |Leukocidin-like |Leukocidin (pore-forming toxin) |automated matches |Staphylococcus aureus [TaxId: 282459]
d3ba0a2 : (ASP289) (LEU320) [view usage] : b.66.1.0 |4-bladed beta-propeller |Hemopexin-like domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d4qcja_ : (ILE78) (VAL121) [view usage] : b.26.1.0 |SMAD/FHA domain |SMAD/FHA domain |automated matches |automated matches |Corynebacterium glutamicum [TaxId: 196627]
d1kqwa_ : (LYS37) (ASP71) [view usage] : b.60.1.2 |Lipocalins |Lipocalins |Fatty acid binding protein-like |Cellular retinol-binding protein II (CRBP) |Zebrafish (Danio rerio) [TaxId: 7955]
d1n1ha_ : (LYS770) (LEU795) [view usage] : e.8.1.4 |DNA/RNA polymerases |DNA/RNA polymerases |RNA-dependent RNA-polymerase |Reovirus polymerase lambda3 |Reovirus [TaxId: 10891]
d3t0aa5 : (HIS735) (ILE770) [view usage] : b.30.5.0 |Supersandwich |Galactose mutarotase-like |automated matches |automated matches |Escherichia coli K-12 [TaxId: 83333]
d1ei5a1 : (ASN386) (SER414) [view usage] : b.61.3.1 |Streptavidin-like |D-aminopeptidase, middle and C-terminal domains |D-aminopeptidase, middle and C-terminal domains |D-aminopeptidase, middle and C-terminal domains |Ochrobactrum anthropi [TaxId: 529]
d1xrgc_ : (TYR-5) (PRO35) [view usage] : d.79.1.1 |Bacillus chorismate mutase-like |YjgF-like |YjgF/L-PSP |Purine regulatory protein YabJ |Clostridium thermocellum [TaxId: 1515]
d2pmub_ : (VAL149) (SER175) [view usage] : a.4.6.0 |DNA/RNA-binding 3-helical bundle |C-terminal effector domain of the bipartite response regulators |automated matches |automated matches |Mycobacterium tuberculosis [TaxId: 83332]
d1qjsa1 : (ASP75) (SER108) [view usage] : b.66.1.1 |4-bladed beta-propeller |Hemopexin-like domain |Hemopexin-like domain |Hemopexin |Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
d2b24a2 : (PHE293) (GLU343) [view usage] : d.129.3.3 |TBP-like |Bet v1-like |Ring hydroxylating alpha subunit catalytic domain |Naphthalene 1,2-dioxygenase alpha subunit, C-domain |Rhodococcus sp. [TaxId: 92694]
d4akma_ : (THR268) (ILE303) [view usage] : b.180.1.1 |Pseudo beta-prism II |LAMP conserved domain-like |LAMP conserved domain |DC-LAMP |Human (Homo sapiens) [TaxId: 9606]
d2xhna1 : (GLY3) (HIS37) [view usage] : b.30.5.10 |Supersandwich |Galactose mutarotase-like |Rhamnogalacturonase B, RhgB, N-terminal domain |automated matches |Fungus (Aspergillus aculeatus) [TaxId: 5053]
d1px4a4 : (HIS735) (GLY771) [view usage] : b.30.5.1 |Supersandwich |Galactose mutarotase-like |beta-Galactosidase, domain 5 |beta-Galactosidase, domain 5 |Escherichia coli [TaxId: 562]
d2a1ka_ : (GLY29) (GLU75) [view usage] : b.40.4.7 |OB-fold |Nucleic acid-binding proteins |Phage ssDNA-binding proteins |automated matches |Enterobacteria phage [TaxId: 12353]
d1orqb2 : (THR122) (PHE171) [view usage] : b.1.1.2 |Immunoglobulin-like beta-sandwich |Immunoglobulin |C1 set domains (antibody constant domain-like) |Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma |Mouse (Mus musculus) [TaxId: 10090]
d1p6gp_ : (ILE4) (ASP53) [view usage] : i.1.1.1 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Ribosome complexes |70S ribosome functional complex |Escherichia coli [TaxId: 562]
d3h8na1 : (ASN47) (ILE101) [view usage] : b.1.1.4 |Immunoglobulin-like beta-sandwich |Immunoglobulin |I set domains |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2bjfa_ : (TYR52) (VAL85) [view usage] : d.153.1.0 |Ntn hydrolase-like |N-terminal nucleophile aminohydrolases (Ntn hydrolases) |automated matches |automated matches |Clostridium perfringens [TaxId: 1502]
d3kaaa_ : (GLY6) (GLU53) [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d2f8oa_ : (LYS6) (LYS58) [view usage] : b.1.1.2 |Immunoglobulin-like beta-sandwich |Immunoglobulin |C1 set domains (antibody constant domain-like) |beta2-microglobulin |Human (Homo sapiens) [TaxId: 9606]
d2mf6a_ : (GLY8) (LEU46) [view usage] : b.61.1.1 |Streptavidin-like |Avidin/streptavidin |Avidin/streptavidin |automated matches |Chicken (Gallus gallus) [TaxId: 9031]
d1uywh1 : (LYS115) (PHE166) [view usage] : b.1.1.2 |Immunoglobulin-like beta-sandwich |Immunoglobulin |C1 set domains (antibody constant domain-like) |Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma |Mouse (Mus musculus) [TaxId: 10090]
d1uywh1 : (PRO167) (LYS209) [view usage] : b.1.1.2 |Immunoglobulin-like beta-sandwich |Immunoglobulin |C1 set domains (antibody constant domain-like) |Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma |Mouse (Mus musculus) [TaxId: 10090]
d3gmwb_ : (SER105) (SER155) [view usage] : d.98.1.0 |BLIP-like |beta-lactamase-inhibitor protein, BLIP |automated matches |automated matches |Streptomyces exfoliatus [TaxId: 1905]
d1e3pa3 : (GLU4) (ASN56) [view usage] : d.14.1.4 |Ribosomal protein S5 domain 2-like |Ribosomal protein S5 domain 2-like |Ribonuclease PH domain 1-like |Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domains 1 and 4 |Streptomyces antibioticus [TaxId: 1890]
d1fkap_ : (UNK4) (UNK47) [view usage] : i.1.1.3 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Small subunit |Prokaryotic (30S subunit) |Thermus thermophilus [TaxId: 274]
d1zy9a2 : (ARG484) (GLU525) [view usage] : c.1.8.13 |TIM beta/alpha-barrel |(Trans)glycosidases |YicI catalytic domain-like |Alpha-galactosidase GalA catalytic domain |Thermotoga maritima [TaxId: 2336]
d1w4ta1 : (GLY209) (GLN241) [view usage] : d.3.1.5 |Cysteine proteinases |Cysteine proteinases |Arylamine N-acetyltransferase |Arylamine N-acetyltransferase |Pseudomonas aeruginosa [TaxId: 287]
d4exza_ : (THR37) (ASP71) [view usage] : b.60.1.2 |Lipocalins |Lipocalins |Fatty acid binding protein-like |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3duea1 : (LYS52) (CYS85) [view usage] : d.98.2.1 |BLIP-like |BT0923-like |BT0923-like |Putative periplasmic protein BVU2987 |Bacteroides vulgatus [TaxId: 821]
d1bm8a_ : (GLN4) (THR37) [view usage] : d.34.1.1 |DNA-binding domain of Mlu1-box binding protein MBP1 |DNA-binding domain of Mlu1-box binding protein MBP1 |DNA-binding domain of Mlu1-box binding protein MBP1 |DNA-binding domain of Mlu1-box binding protein MBP1 |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d3nx1b_ : (ALA56) (PRO96) [view usage] : b.60.1.0 |Lipocalins |Lipocalins |automated matches |automated matches |Enterobacter sp. [TaxId: 418698]
d1bh3a_ : (ALA68) (ASP152) [view usage] : f.4.3.1 |Transmembrane beta-barrels |Porins |Porin |Porin |Rhodopseudomonas blastica, strain DSM2131 [TaxId: 1075]
d1ynja2 : (ILE129) (ASP168) [view usage] : d.181.1.1 |Insert subdomain of RNA polymerase alpha subunit |Insert subdomain of RNA polymerase alpha subunit |Insert subdomain of RNA polymerase alpha subunit |RNA polymerase alpha subunit |Thermus aquaticus [TaxId: 271]
d1r17a2 : (ASN524) (ILE581) [view usage] : b.2.3.4 |Common fold of diphtheria toxin/transcription factors/cytochrome f |Bacterial adhesins |Fibrinogen-binding domain |Fibrinogen-binding adhesin SdrG |Staphylococcus epidermidis [TaxId: 1282]
d3njxa1 : (PHE2) (HIS37) [view usage] : b.30.5.10 |Supersandwich |Galactose mutarotase-like |Rhamnogalacturonase B, RhgB, N-terminal domain |Rhamnogalacturonase B, RhgB, N-terminal domain |Fungus (Aspergillus aculeatus) [TaxId: 5053]
d1a87a_ : (LEU122) (ASN162) [view usage] : f.1.1.1 |Toxins' membrane translocation domains |Colicin |Colicin |Colicin N |Escherichia coli [TaxId: 562]
d1su3a2 : (ASP285) (PHE316) [view usage] : b.66.1.1 |4-bladed beta-propeller |Hemopexin-like domain |Hemopexin-like domain |Collagenase (MMP1), C-terminal domain |Human (Homo sapiens) [TaxId: 9606]
d1cl7h1 : (ALA68) (SER112) [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |Immunoglobulin heavy chain variable domain, VH |Mouse (Mus musculus), cluster 4 [TaxId: 10090]
d1qkzh2 : (SER120) (PHE166) [view usage] : b.1.1.2 |Immunoglobulin-like beta-sandwich |Immunoglobulin |C1 set domains (antibody constant domain-like) |Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma |Mouse (Mus musculus) [TaxId: 10090]
d1auyb_ : (GLY113) (VAL173) [view usage] : b.121.4.6 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Positive stranded ssRNA viruses |Tymoviridae-like VP |Tymovirus coat protein |TYMV (Turnip yellow mosaic virus) [TaxId: 12154]
d2yhea1 : (PRO271) (ASP310) [view usage] : d.157.1.0 |Metallo-hydrolase/oxidoreductase |Metallo-hydrolase/oxidoreductase |automated matches |automated matches |Pseudomonas sp. [TaxId: 1007495]
d1qupa1 : (SER78) (ILE133) [view usage] : b.1.8.1 |Immunoglobulin-like beta-sandwich |Cu,Zn superoxide dismutase-like |Cu,Zn superoxide dismutase-like |Copper chaperone for superoxide dismutase, C-terminal domain |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d3s8rb_ : (ALA205) (VAL239) [view usage] : d.153.1.2 |Ntn hydrolase-like |N-terminal nucleophile aminohydrolases (Ntn hydrolases) |Penicillin acylase, catalytic domain |Cephalosporin acylase |Pseudomonas sp., glutarylamidase [TaxId: 306]
d1i85c_ : (ILE67) (GLY109) [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |Immunoreceptor CTLA-4 (CD152), N-terminal fragment |Human (Homo sapiens) [TaxId: 9606]
d2xacc_ : (ARG183) (ARG224) [view usage] : b.1.1.4 |Immunoglobulin-like beta-sandwich |Immunoglobulin |I set domains |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1gxdb2 : (ASP447) (PRO477) [view usage] : b.66.1.1 |4-bladed beta-propeller |Hemopexin-like domain |Hemopexin-like domain |Gelatinase A (MMP-2), C-terminal domain |Human (Homo sapiens) [TaxId: 9606]
d4aayb_ : (GLU48) (SER100) [view usage] : b.33.1.0 |ISP domain |ISP domain |automated matches |automated matches |Arsenite-oxidising bacterium [TaxId: 97708]
d2k4ja_ : (VAL15) (LEU42) [view usage] : a.4.6.0 |DNA/RNA-binding 3-helical bundle |C-terminal effector domain of the bipartite response regulators |automated matches |automated matches |Helicobacter pylori [TaxId: 85963]
d3gmya_ : (ALA107) (GLN152) [view usage] : d.98.1.0 |BLIP-like |beta-lactamase-inhibitor protein, BLIP |automated matches |automated matches |Streptomyces clavuligerus [TaxId: 1901]
d4ifsa_ : (ILE199) (PRO235) [view usage] : b.55.1.0 |PH domain-like barrel |PH domain-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2az4a1 : (ASP151) (GLY188) [view usage] : d.157.1.10 |Metallo-hydrolase/oxidoreductase |Metallo-hydrolase/oxidoreductase |beta-CASP RNA-metabolising hydrolases |Hypothetical protein EF2904 |Enterococcus faecalis [TaxId: 1351]
d1nkga3 : (GLY3) (HIS37) [view usage] : b.30.5.10 |Supersandwich |Galactose mutarotase-like |Rhamnogalacturonase B, RhgB, N-terminal domain |Rhamnogalacturonase B, RhgB, N-terminal domain |Fungus (Aspergillus aculeatus) [TaxId: 5053]
d3bibx_ : (ASP4) (GLY51) [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d4e57a_ : (ALA201) (VAL235) [view usage] : d.153.1.2 |Ntn hydrolase-like |N-terminal nucleophile aminohydrolases (Ntn hydrolases) |Penicillin acylase, catalytic domain |automated matches |Pseudomonas sp. [TaxId: 81841]
d1zkpa1 : (GLU118) (SER153) [view usage] : d.157.1.9 |Metallo-hydrolase/oxidoreductase |Metallo-hydrolase/oxidoreductase |YhfI-like |Hypothetical protein BA1088 (BAS1016) |Anthrax bacillus (Bacillus anthracis) [TaxId: 1392]
d2zgka_ : (ASN44) (SER87) [view usage] : b.29.1.0 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |automated matches |automated matches |Agrocybe aegerita [TaxId: 5400]
d1mdah_ : (HIS169) (ILE201) [view usage] : b.69.2.1 |7-bladed beta-propeller |YVTN repeat-like/Quinoprotein amine dehydrogenase |Methylamine dehydrogenase, H-chain |Methylamine dehydrogenase, H-chain |Paracoccus denitrificans [TaxId: 266]
d2hqna_ : (SER118) (LYS145) [view usage] : a.4.6.0 |DNA/RNA-binding 3-helical bundle |C-terminal effector domain of the bipartite response regulators |automated matches |automated matches |Helicobacter pylori [TaxId: 85963]
d1dzoa_ : (THR84) (ASP132) [view usage] : d.24.1.1 |Pili subunits |Pili subunits |Pilin |Type IV Pilin Pak |Pseudomonas aeruginosa [TaxId: 287]
d3kaab_ : (LYS13) (SER61) [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d3ov6a1 : (LYS1006) (SER1052) [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1h6aa2 : (SER329) (MET365) [view usage] : d.81.1.5 |FwdE/GAPDH domain-like |Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain |Glucose 6-phosphate dehydrogenase-like |Glucose-fructose oxidoreductase |Zymomonas mobilis [TaxId: 542]
d3nx1a_ : (ALA56) (PRO96) [view usage] : b.60.1.0 |Lipocalins |Lipocalins |automated matches |automated matches |Enterobacter sp. [TaxId: 418698]
d1ej8a_ : (SER78) (ILE133) [view usage] : b.1.8.1 |Immunoglobulin-like beta-sandwich |Cu,Zn superoxide dismutase-like |Cu,Zn superoxide dismutase-like |Copper chaperone for superoxide dismutase, C-terminal domain |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1hyrc2 : (SER4) (PRO45) [view usage] : d.19.1.1 |MHC antigen-recognition domain |MHC antigen-recognition domain |MHC antigen-recognition domain |Class I MHC homolog |Human (Homo sapiens), Mic-a [TaxId: 9606]
d1maeh_ : (MET129) (PRO167) [view usage] : b.69.2.1 |7-bladed beta-propeller |YVTN repeat-like/Quinoprotein amine dehydrogenase |Methylamine dehydrogenase, H-chain |Methylamine dehydrogenase, H-chain |Paracoccus versutus (Thiobacillus versutus) [TaxId: 34007]
d1maeh_ : (HIS171) (GLY205) [view usage] : b.69.2.1 |7-bladed beta-propeller |YVTN repeat-like/Quinoprotein amine dehydrogenase |Methylamine dehydrogenase, H-chain |Methylamine dehydrogenase, H-chain |Paracoccus versutus (Thiobacillus versutus) [TaxId: 34007]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
b.70, e.8, c.1, b.69, i.1, b.29, b.30, d.157, d.129, f.4, b.40, d.153, b.60, d.14, b.121, d.3, d.81, b.2, b.1, d.98,
d.19, b.55, d.79, b.26, a.4, b.61, f.1, b.33, d.24, b.66, f.6, b.64, d.34, b.180, d.181, d.316