Tableau information
Concept source: d2we2a2 amino acid (a.a.) range (GLY178)(TYR216)
nSSEs in this Concept: 4
String of secondary struct.elems. (SSEs) defining this concept: EEEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(GLY178) (CYS184) E1
(GLY189) (SER199) E2
(GLN201) (LYS207) E3
(PHE211) (TYR216) E4
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 155.7° E2
E3 -54.3° 148.1° E3
E4 -28.0° 137.4° -60.3°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±13.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d2bsya1 : (PRO67) (ALA107) [view usage] : b.85.4.1 |beta-clip |dUTPase-like |dUTPase-like |Monomeric viral dUTPase |Epstein-Barr virus [TaxId: 10376]
d2octa_ : (GLY50) (ASN88) [view usage] : d.17.1.2 |Cystatin-like |Cystatin/monellin |Cystatins |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1js4a2 : (ILE463) (GLU507) [view usage] : b.2.2.2 |Common fold of diphtheria toxin/transcription factors/cytochrome f |Carbohydrate-binding domain |Cellulose-binding domain family III |Endo/exocellulase:cellobiose E-4, C-terminal domain |Thermobifida fusca [TaxId: 2021]
d3rf1a_ : (HIS106) (GLY146) [view usage] : d.104.1.1 |Class II aaRS and biotin synthetases |Class II aaRS and biotin synthetases |Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain |automated matches |Campylobacter jejuni [TaxId: 354242]
d1e54a_ : (ASP268) (PHE332) [view usage] : f.4.3.1 |Transmembrane beta-barrels |Porins |Porin |Porin |Comamonas acidovorans [TaxId: 80866]
d1wv3a1 : (LYS3) (LYS36) [view usage] : b.26.1.4 |SMAD/FHA domain |SMAD/FHA domain |EssC N-terminal domain-like |Protein EssC |Staphylococcus aureus [TaxId: 1280]
d2hmga_ : (GLU280) (LYS310) [view usage] : b.19.1.2 |Viral protein domain |Viral protein domain |Influenza hemagglutinin headpiece |Hemagglutinin |Influenza A virus, different strains [TaxId: 11320]
d4unwa_ : (GLU280) (ARG310) [view usage] : b.19.1.2 |Viral protein domain |Viral protein domain |Influenza hemagglutinin headpiece |automated matches |Influenza a virus (a/eq/newmarket/93/(h3n8)) [TaxId: 159470]
d1cpna_ : (ILE121) (GLY177) [view usage] : b.29.1.2 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Glycosyl hydrolases family 16 |Bacillus 1-3,1-4-beta-glucanase |Bacillus macerans [TaxId: 44252]
d2bwob_ : (ASP25) (CYS52) [view usage] : c.67.1.4 |PLP-dependent transferase-like |PLP-dependent transferases |GABA-aminotransferase-like |automated matches |Rhodobacter capsulatus [TaxId: 1061]
d1lqtb1 : (LEU272) (PRO314) [view usage] : c.3.1.1 |FAD/NAD(P)-binding domain |FAD/NAD(P)-binding domain |C-terminal domain of adrenodoxin reductase-like |Ferredoxin:NADP reductase FprA |Mycobacterium tuberculosis [TaxId: 1773]
d2rsda_ : (LYS114) (ASP149) [view usage] : g.50.1.0 |FYVE/PHD zinc finger |FYVE/PHD zinc finger |automated matches |automated matches |Oryza sativa [TaxId: 39947]
d2ylkb_ : (ASP1) (GLU46) [view usage] : b.2.2.0 |Common fold of diphtheria toxin/transcription factors/cytochrome f |Carbohydrate-binding domain |automated matches |automated matches |Clostridium thermocellum [TaxId: 1515]
d1w8xh_ : (SER255) (PHE291) [view usage] : i.6.1.1 |Viruses and virus-receptor complexes |Viruses and virus-receptor complexes |Viruses and virus-receptor complexes |PRD1 capsid assembly |Bacteriophage PRD1 [TaxId: 10658]
d2b29a_ : (ILE24) (ALA59) [view usage] : b.40.4.3 |OB-fold |Nucleic acid-binding proteins |Single strand DNA-binding domain, SSB |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2k4wa_ : (ALA1) (ALA39) [view usage] : b.1.8.1 |Immunoglobulin-like beta-sandwich |Cu,Zn superoxide dismutase-like |Cu,Zn superoxide dismutase-like |automated matches |Salmonella enterica [TaxId: 119912]
d3vj7a_ : (ASP70) (GLY111) [view usage] : d.243.1.2 |Colicin D/E5 nuclease domain |Colicin D/E5 nuclease domain |Colicin E5 nuclease domain |Colicin E5 |Escherichia coli [TaxId: 562]
d3zqxa_ : (ASP1) (TYR42) [view usage] : b.2.2.0 |Common fold of diphtheria toxin/transcription factors/cytochrome f |Carbohydrate-binding domain |automated matches |automated matches |Clostridium thermocellum [TaxId: 1515]
d1lsla1 : (ASP417) (ASP469) [view usage] : g.60.1.1 |TSP-1 type 1 repeat |TSP-1 type 1 repeat |TSP-1 type 1 repeat |Thrombospondin-1 (TSP-1) |Human (Homo sapiens) [TaxId: 9606]
d3f4fc_ : (ASN75) (LEU117) [view usage] : b.85.4.0 |beta-clip |dUTPase-like |automated matches |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d3svaa_ : (VAL50) (ASP119) [view usage] : d.17.1.2 |Cystatin-like |Cystatin/monellin |Cystatins |Cystatin C |Human (Homo sapiens) [TaxId: 9606]
d4gv8d_ : (HIS72) (GLU146) [view usage] : b.85.4.0 |beta-clip |dUTPase-like |automated matches |automated matches |Staphylococcus phage [TaxId: 12360]
d2we2a1 : (PRO67) (ALA107) [view usage] : b.85.4.1 |beta-clip |dUTPase-like |dUTPase-like |automated matches |Human herpesvirus 4 [TaxId: 10377]
d3zpyb_ : (PHE249) (ASP281) [view usage] : b.29.1.0 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |automated matches |automated matches |Zobellia galactanivorans [TaxId: 63186]
d2ic2b_ : (SER464) (ARG503) [view usage] : b.1.2.1 |Immunoglobulin-like beta-sandwich |Fibronectin type III |Fibronectin type III |Hedgehog receptor iHog |Fruit fly (Drosophila melanogaster) [TaxId: 7227]
d1w8xa_ : (SER255) (PHE291) [view usage] : i.6.1.1 |Viruses and virus-receptor complexes |Viruses and virus-receptor complexes |Viruses and virus-receptor complexes |PRD1 capsid assembly |Bacteriophage PRD1 [TaxId: 10658]
d3cckb_ : (GLY144) (GLY169) [view usage] : d.169.1.1 |C-type lectin-like |C-type lectin-like |C-type lectin domain |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1ms0a1 : (GLY515) (MET541) [view usage] : b.29.1.15 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Trypanosoma sialidase, C-terminal domain |Trypanosoma sialidase, C-terminal domain |Trypanosoma cruzi [TaxId: 5693]
d2hsta_ : (SER144) (PRO177) [view usage] : c.55.4.2 |Ribonuclease H-like motif |Translational machinery components |ERF1/Dom34 middle domain-like |Middle domain of eukaryotic peptide chain release factor subunit 1, ERF1 |Human (Homo sapiens) [TaxId: 9606]
d4b9ca_ : (HIS3) (TYR45) [view usage] : b.2.2.0 |Common fold of diphtheria toxin/transcription factors/cytochrome f |Carbohydrate-binding domain |automated matches |automated matches |Clostridium thermocellum [TaxId: 203119]
d2g2nc_ : (LEU6) (PHE66) [view usage] : b.3.4.0 |Prealbumin-like |Transthyretin (synonym: prealbumin) |automated matches |automated matches |Escherichia coli [TaxId: 562]
d1lgqa_ : (TRP16) (SER52) [view usage] : b.26.1.2 |SMAD/FHA domain |SMAD/FHA domain |FHA domain |Cell cycle checkpoint protein Chfr |Human (Homo sapiens) [TaxId: 9606]
d3hhqf_ : (GLY76) (LEU117) [view usage] : b.85.4.0 |beta-clip |dUTPase-like |automated matches |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d2djha_ : (ASP70) (GLY111) [view usage] : d.243.1.2 |Colicin D/E5 nuclease domain |Colicin D/E5 nuclease domain |Colicin E5 nuclease domain |automated matches |Escherichia coli [TaxId: 562]
d3gmwb_ : (SER40) (THR77) [view usage] : d.98.1.0 |BLIP-like |beta-lactamase-inhibitor protein, BLIP |automated matches |automated matches |Streptomyces exfoliatus [TaxId: 1905]
d1ms5a1 : (GLY515) (MET541) [view usage] : b.29.1.15 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Trypanosoma sialidase, C-terminal domain |Trypanosoma sialidase, C-terminal domain |Trypanosoma cruzi [TaxId: 5693]
d4bboc_ : (ASN4) (ALA35) [view usage] : b.61.1.0 |Streptavidin-like |Avidin/streptavidin |automated matches |automated matches |Bradyrhizobium japonicum [TaxId: 375]
d3r6ba2 : (ASN492) (ILE540) [view usage] : g.60.1.1 |TSP-1 type 1 repeat |TSP-1 type 1 repeat |TSP-1 type 1 repeat |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1wcsa1 : (GLY519) (LEU545) [view usage] : b.29.1.15 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Trypanosoma sialidase, C-terminal domain |Trypanosoma sialidase, C-terminal domain |Trypanosoma rangeli [TaxId: 5698]
d4q14a_ : (LEU4) (HIS67) [view usage] : b.3.4.0 |Prealbumin-like |Transthyretin (synonym: prealbumin) |automated matches |automated matches |Brucella melitensis [TaxId: 359391]
d4c8xa_ : (ASP1) (GLU46) [view usage] : b.2.2.0 |Common fold of diphtheria toxin/transcription factors/cytochrome f |Carbohydrate-binding domain |automated matches |automated matches |Clostridium thermocellum [TaxId: 203119]
d4gnia2 : (ILE206) (TYR238) [view usage] : c.55.1.0 |Ribonuclease H-like motif |Actin-like ATPase domain |automated matches |automated matches |Chaetomium thermophilum [TaxId: 759272]
d1gw7a_ : (SER1255) (PHE1291) [view usage] : i.6.1.1 |Viruses and virus-receptor complexes |Viruses and virus-receptor complexes |Viruses and virus-receptor complexes |p3 shell |Bacteriophage PRD1 [TaxId: 10658]
d4ogxa_ : (VAL444) (THR496) [view usage] : b.47.1.2 |Trypsin-like serine proteases |Trypsin-like serine proteases |Eukaryotic proteases |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1fa3a_ : (TYR58) (PRO92) [view usage] : d.17.1.1 |Cystatin-like |Cystatin/monellin |Monellin |Monellin, B & A chains together |Serendipity berry (Dioscoreophyllum cumminsii) [TaxId: 3457]
d2xbta_ : (ASP9) (TYR49) [view usage] : b.2.2.0 |Common fold of diphtheria toxin/transcription factors/cytochrome f |Carbohydrate-binding domain |automated matches |automated matches |Bacteroides cellulosolvens [TaxId: 35825]
d1mr5a1 : (GLY515) (MET541) [view usage] : b.29.1.15 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Trypanosoma sialidase, C-terminal domain |Trypanosoma sialidase, C-terminal domain |Trypanosoma cruzi [TaxId: 5693]
d4uo0e_ : (GLU280) (ARG310) [view usage] : b.19.1.2 |Viral protein domain |Viral protein domain |Influenza hemagglutinin headpiece |automated matches |Influenza a virus (a/equine/richmond/1/2007)(h3n8)) [TaxId: 560387]
d1t6ca1 : (PRO7) (ILE42) [view usage] : c.55.1.8 |Ribonuclease H-like motif |Actin-like ATPase domain |Ppx/GppA phosphatase |Exopolyphosphatase Ppx |Aquifex aeolicus [TaxId: 63363]
d1ti2a2 : (GLU3) (ALA36) [view usage] : c.81.1.1 |Formate dehydrogenase/DMSO reductase, domains 1-3 |Formate dehydrogenase/DMSO reductase, domains 1-3 |Formate dehydrogenase/DMSO reductase, domains 1-3 |Transhydroxylase alpha subunit, AthL |Pelobacter acidigallici [TaxId: 35816]
d2ylka_ : (ASP1) (TYR42) [view usage] : b.2.2.0 |Common fold of diphtheria toxin/transcription factors/cytochrome f |Carbohydrate-binding domain |automated matches |automated matches |Clostridium thermocellum [TaxId: 1515]
d3azbi_ : (GLY186) (LEU228) [view usage] : d.38.1.6 |Thioesterase/thiol ester dehydrase-isomerase |Thioesterase/thiol ester dehydrase-isomerase |FabZ-like |(3R)-hydroxymyristoyl ACP dehydrase FabZ |Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
d1gw8a_ : (SER1255) (PHE1291) [view usage] : i.6.1.1 |Viruses and virus-receptor complexes |Viruses and virus-receptor complexes |Viruses and virus-receptor complexes |p3 shell |Bacteriophage PRD1 [TaxId: 10658]
d4b96a_ : (SER1) (TYR44) [view usage] : b.2.2.0 |Common fold of diphtheria toxin/transcription factors/cytochrome f |Carbohydrate-binding domain |automated matches |automated matches |Clostridium clariflavum [TaxId: 288965]
d2bt1a1 : (VAL68) (ARG110) [view usage] : b.85.4.1 |beta-clip |dUTPase-like |dUTPase-like |Monomeric viral dUTPase |Epstein-Barr virus [TaxId: 10376]
d4gnib2 : (ILE206) (TYR238) [view usage] : c.55.1.0 |Ribonuclease H-like motif |Actin-like ATPase domain |automated matches |automated matches |Chaetomium thermophilum [TaxId: 759272]
d3r6ba1 : (ASP435) (ASP487) [view usage] : g.60.1.0 |TSP-1 type 1 repeat |TSP-1 type 1 repeat |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1gt8a3 : (PHE390) (LYS430) [view usage] : c.3.1.1 |FAD/NAD(P)-binding domain |FAD/NAD(P)-binding domain |C-terminal domain of adrenodoxin reductase-like |Dihydropyrimidine dehydrogenase, domain 3 |Pig (Sus scrofa) [TaxId: 9823]
d2we0a1 : (PRO67) (ALA107) [view usage] : b.85.4.1 |beta-clip |dUTPase-like |dUTPase-like |automated matches |Human herpesvirus 4 [TaxId: 10377]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.67, b.19, c.81, b.29, b.47, i.6, f.4, b.40, d.104, c.55, d.169, b.2, b.85, b.1, d.17, d.98, d.38, b.26, c.3, b.61,
b.3, g.50, d.243, g.60