Tableau information
Concept source: d3p9wg_ amino acid (a.a.) range (SER50)(LEU97)
nSSEs in this Concept: 4
String of secondary struct.elems. (SSEs) defining this concept: EEEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(SER50) (MET55) E1
(THR71) (GLN79) E2
(GLN79) (LYS84) E3
(GLY88) (LEU97) E4
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 139.9° E2
E3 -153.1° -66.9° E3
E4 -26.7° -164.6° 127.0°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±13.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d3pt6b4 : (LEU915) (LEU939) [view usage] : b.34.12.1 |SH3-like barrel |BAH domain |BAH domain |BAH domains from DNA methyltransferase 1 (DNMT1) |Mouse (Mus musculus) [TaxId: 10090]
d3pt6a4 : (LEU915) (LEU939) [view usage] : b.34.12.1 |SH3-like barrel |BAH domain |BAH domain |BAH domains from DNA methyltransferase 1 (DNMT1) |Mouse (Mus musculus) [TaxId: 10090]
d1tnra_ : (LYS28) (ASN62) [view usage] : b.22.1.1 |TNF-like |TNF-like |TNF-like |Tumor necrosis factor (TNF) |Human (Homo sapiens) [TaxId: 9606]
d4oddb_ : (GLY84) (GLY120) [view usage] : b.60.1.0 |Lipocalins |Lipocalins |automated matches |automated matches |Canis lupus [TaxId: 9615]
d2vfqa_ : (THR515) (GLU542) [view usage] : b.80.1.6 |Single-stranded right-handed beta-helix |Pectin lyase-like |P22 tailspike protein |P22 tailspike protein |Salmonella phage P22 [TaxId: 10754]
d3ecfa1 : (ALA60) (GLU98) [view usage] : d.17.4.21 |Cystatin-like |NTF2-like |Ava4193-like |Uncharacterized protein Ava4193 |Anabaena variabilis [TaxId: 1172]
d3s7na2 : (ASP171) (PRO204) [view usage] : d.110.2.1 |Profilin-like |GAF domain-like |GAF domain |Bacteriophytochrome BphP |Deinococcus radiodurans [TaxId: 1299]
d1eg1a_ : (GLY81) (SER114) [view usage] : b.29.1.10 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Glycosyl hydrolase family 7 catalytic core |Cellobiohydrolase I (cellulase, Endoglucanase I, CBH1) |Trichoderma reesei, Endoglucanase I [TaxId: 51453]
d3vn9a_ : (ASP52) (ARG85) [view usage] : d.144.1.0 |Protein kinase-like (PK-like) |Protein kinase-like (PK-like) |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d4a5ra_ : (GLY228) (ASP268) [view usage] : e.3.1.1 |beta-lactamase/transpeptidase-like |beta-lactamase/transpeptidase-like |beta-Lactamase/D-ala carboxypeptidase |automated matches |Bacillus licheniformis [TaxId: 1402]
d1a57a_ : (ASN42) (GLY71) [view usage] : b.60.1.2 |Lipocalins |Lipocalins |Fatty acid binding protein-like |Intestinal fatty acid binding protein |Norway rat (Rattus norvegicus) [TaxId: 10116]
d1ooca_ : (ALA186) (GLY213) [view usage] : b.80.1.1 |Single-stranded right-handed beta-helix |Pectin lyase-like |Pectate lyase-like |Pectate lyase |Erwinia chrysanthemi, type A [TaxId: 556]
d1uuba_ : (GLU5) (GLY35) [view usage] : g.8.1.1 |BPTI-like |BPTI-like |Small Kunitz-type inhibitors & BPTI-like toxins |Pancreatic trypsin inhibitor, BPTI |Cow (Bos taurus) [TaxId: 9913]
d2ymea_ : (ILE152) (PHE202) [view usage] : b.96.1.0 |Nicotinic receptor ligand binding domain-like |Nicotinic receptor ligand binding domain-like |automated matches |automated matches |California sea hare (Aplysia californica) [TaxId: 6500]
d1qjoa_ : (THR18) (ALA48) [view usage] : b.84.1.1 |Barrel-sandwich hybrid |Single hybrid motif |Biotinyl/lipoyl-carrier proteins and domains |Lipoyl domain of dihydrolipoamide acetyltransferase |Escherichia coli [TaxId: 562]
d2b42b_ : (GLY62) (THR93) [view usage] : b.29.1.11 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Xylanase/endoglucanase 11/12 |Xylanase II |Bacillus circulans [TaxId: 1397]
d4j8ta_ : (MET62) (ASP109) [view usage] : d.17.4.10 |Cystatin-like |NTF2-like |PhzA/PhzB-like |Uncharacterized protein PA3332 |Pseudomonas aeruginosa [TaxId: 287]
d1b2pa_ : (ASN2) (PHE34) [view usage] : b.78.1.1 |beta-Prism II |alpha-D-mannose-specific plant lectins |alpha-D-mannose-specific plant lectins |Lectin (agglutinin) |Bluebell (Scilla campanulata) [TaxId: 81759]
d4jbja1 : (LEU24) (PHE56) [view usage] : b.40.16.0 |OB-fold |HIN-2000 domain-like |automated matches |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d2vfoa_ : (GLN489) (ASN520) [view usage] : b.80.1.6 |Single-stranded right-handed beta-helix |Pectin lyase-like |P22 tailspike protein |P22 tailspike protein |Salmonella phage P22 [TaxId: 10754]
d1e8ta_ : (ALA525) (ASN568) [view usage] : b.68.1.1 |6-bladed beta-propeller |Sialidases |Sialidases (neuraminidases) |Paramyxovirus hemagglutinin-neuraminidase head domain |Newcastle disease virus [TaxId: 11176]
d4nm5a_ : (GLY24) (ASP58) [view usage] : d.144.1.7 |Protein kinase-like (PK-like) |Protein kinase-like (PK-like) |Protein kinases, catalytic subunit |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1i2wb_ : (GLY228) (ARG267) [view usage] : e.3.1.1 |beta-lactamase/transpeptidase-like |beta-lactamase/transpeptidase-like |beta-Lactamase/D-ala carboxypeptidase |beta-Lactamase, class A |Bacillus licheniformis [TaxId: 1402]
d2e7aa_ : (PRO12) (ARG44) [view usage] : b.22.1.1 |TNF-like |TNF-like |TNF-like |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2x71a_ : (GLY228) (ASP268) [view usage] : e.3.1.1 |beta-lactamase/transpeptidase-like |beta-lactamase/transpeptidase-like |beta-Lactamase/D-ala carboxypeptidase |automated matches |Bacillus licheniformis [TaxId: 1402]
d3l9jt_ : (PRO12) (ARG44) [view usage] : b.22.1.1 |TNF-like |TNF-like |TNF-like |Tumor necrosis factor (TNF) |Human (Homo sapiens) [TaxId: 9606]
d2vfpa_ : (GLN489) (ASN520) [view usage] : b.80.1.6 |Single-stranded right-handed beta-helix |Pectin lyase-like |P22 tailspike protein |P22 tailspike protein |Salmonella phage P22 [TaxId: 10754]
d1k24a_ : (GLU87) (GLN148) [view usage] : f.4.4.2 |Transmembrane beta-barrels |OMPT-like |Outer membrane adhesin/invasin OpcA |Outer membrane adhesin/invasin OpcA |Neisseria meningitidis [TaxId: 487]
d2pytb_ : (PHE109) (LEU144) [view usage] : b.82.1.24 |Double-stranded beta-helix |RmlC-like cupins |EutQ-like |Ethanolamine utilization protein EutQ |Salmonella typhimurium [TaxId: 90371]
d1vmoa_ : (ASP46) (VAL78) [view usage] : b.77.1.1 |beta-Prism I |Vitelline membrane outer protein-I (VMO-I) |Vitelline membrane outer protein-I (VMO-I) |Vitelline membrane outer protein-I (VMO-I) |Chicken (Gallus gallus) [TaxId: 9031]
d2edma1 : (SER41) (LYS79) [view usage] : b.170.1.1 |WSSV envelope protein-like |WSSV envelope protein-like |WSSV envelope protein-like |Envelope protein VP26 |White spot syndrome virus, WSSV [TaxId: 92652]
d2vfna_ : (THR515) (GLY544) [view usage] : b.80.1.6 |Single-stranded right-handed beta-helix |Pectin lyase-like |P22 tailspike protein |P22 tailspike protein |Salmonella phage P22 [TaxId: 10754]
d1j1bb_ : (GLY524) (ASP558) [view usage] : d.144.1.7 |Protein kinase-like (PK-like) |Protein kinase-like (PK-like) |Protein kinases, catalytic subunit |Glycogen synthase kinase-3 beta (Gsk3b) |Human (Homo sapiens) [TaxId: 9606]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
b.68, b.80, e.3, b.82, b.29, f.4, d.144, b.40, b.60, d.110, b.96, d.17, b.84, b.77, b.22, b.34, g.17, g.8, b.78, b.170