Tableau information
Concept source: d2xcda_ amino acid (a.a.) range (ASP33)(PRO62)
nSSEs in this Concept: 4
String of secondary struct.elems. (SSEs) defining this concept: EEEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(ASP33) (LYS37) E1
(GLU40) (LEU46) E2
(VAL48) (GLU54) E3
(GLU57) (PRO62) E4
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 -162.6° E2
E3 -95.1° 68.5° E3
E4 -64.3° 124.8° 140.7°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±13.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d2hknb_ : (SER31) (ARG90) [view usage] : b.34.10.1 |SH3-like barrel |Cap-Gly domain |Cap-Gly domain |Dynactin 1 |Human (Homo sapiens) [TaxId: 9606]
d1uy1a_ : (GLY46) (THR75) [view usage] : b.18.1.10 |Galactose-binding domain-like |Galactose-binding domain-like |Family 6 carbohydrate binding module, CBM6 |Putative xylanase |Clostridium stercorarium [TaxId: 1510]
d3s6ca1 : (ASP1053) (HIS1084) [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2x89d_ : (LEU54) (SER88) [view usage] : b.1.1.2 |Immunoglobulin-like beta-sandwich |Immunoglobulin |C1 set domains (antibody constant domain-like) |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3zvxa_ : (GLY157) (TYR185) [view usage] : b.29.1.1 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Legume lectins |automated matches |Platypodium elegans [TaxId: 115002]
d2jd4b2 : (GLY2877) (THR2907) [view usage] : b.29.1.0 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |automated matches |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d2jd4b2 : (GLY3004) (ARG3032) [view usage] : b.29.1.0 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |automated matches |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d1z7qh1 : (SER2) (ASN28) [view usage] : d.153.1.4 |Ntn hydrolase-like |N-terminal nucleophile aminohydrolases (Ntn hydrolases) |Proteasome subunits |Proteasome beta subunit (catalytic) |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1y13a_ : (SER13) (THR39) [view usage] : d.96.1.2 |T-fold |Tetrahydrobiopterin biosynthesis enzymes-like |6-pyruvoyl tetrahydropterin synthase |6-pyruvoyl tetrahydropterin synthase |Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
d3dkuf_ : (MET1) (ASN32) [view usage] : d.113.1.0 |Nudix |Nudix |automated matches |automated matches |Escherichia coli [TaxId: 405955]
d3dkub_ : (MET1) (ASN32) [view usage] : d.113.1.0 |Nudix |Nudix |automated matches |automated matches |Escherichia coli [TaxId: 405955]
d1grua_ : (GLU186) (GLU216) [view usage] : i.16.1.1 |GroE chaperon |GroE chaperon |GroE chaperon |GroE chaperon |Escherichia coli [TaxId: 562]
d1kgya_ : (THR66) (ASP104) [view usage] : b.18.1.4 |Galactose-binding domain-like |Galactose-binding domain-like |Ephrin receptor ligand binding domain |Ligand-binding domain of the ephb2 receptor tyrosine kinase |Mouse (Mus musculus) [TaxId: 10090]
d3f4fc_ : (GLN37) (ILE65) [view usage] : b.85.4.0 |beta-clip |dUTPase-like |automated matches |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d4av4a_ : (PRO26) (LEU58) [view usage] : b.2.3.2 |Common fold of diphtheria toxin/transcription factors/cytochrome f |Bacterial adhesins |Pilus subunits |automated matches |Escherichia coli [TaxId: 364106]
d1qtja_ : (UNK7) (UNK38) [view usage] : i.12.1.1 |Proteins of incorrect, partial and unknown sequence |Proteins of incorrect, partial and unknown sequence |Proteins of incorrect, partial and unknown sequence |Serum amyloid P component, SAP |Horseshoe crab (Limulus polyphemus) [TaxId: 6850]
d3hwua_ : (LEU135) (PRO171) [view usage] : d.290.1.0 |AF0104/ALDC/Ptd012-like |AF0104/ALDC/Ptd012-like |automated matches |automated matches |Ralstonia eutropha [TaxId: 264198]
d2h6lb_ : (PHE106) (GLU140) [view usage] : d.290.1.3 |AF0104/ALDC/Ptd012-like |AF0104/ALDC/Ptd012-like |AF0104-like |automated matches |Archaeoglobus fulgidus [TaxId: 2234]
d2xcda_ : (ASP33) (PRO62) [view usage] : b.85.4.0 |beta-clip |dUTPase-like |automated matches |automated matches |Bacillus subtilis [TaxId: 1423]
d4tw1d_ : (ILE134) (VAL193) [view usage] : f.6.1.0 |Leukocidin-like |Leukocidin-like |automated matches |automated matches |Staphylococcus aureus [TaxId: 451516]
d3lqwa_ : (THR33) (ILE61) [view usage] : b.85.4.0 |beta-clip |dUTPase-like |automated matches |automated matches |Entamoeba histolytica [TaxId: 294381]
d3eyja_ : (GLY258) (SER294) [view usage] : b.19.1.2 |Viral protein domain |Viral protein domain |Influenza hemagglutinin headpiece |automated matches |Influenza A virus [TaxId: 11320]
d1snfb_ : (VAL35) (VAL61) [view usage] : b.85.4.1 |beta-clip |dUTPase-like |dUTPase-like |Deoxyuridine 5'-triphosphate nucleotidohydrolase (dUTPase) |Mycobacterium tuberculosis, rv2697c [TaxId: 1773]
d4qead_ : (GLY177) (LYS212) [view usage] : c.106.1.0 |SurE-like |SurE-like |automated matches |automated matches |Brucella abortus [TaxId: 430066]
d3j6vk_ : (PRO58) (ARG77) [view usage] : i.1.1.3 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Small subunit |Eukaryotic, mitochondrial (28S subunit) |Cow (Bos taurus) [TaxId: 9913]
d1mq7a_ : (ASP34) (GLY66) [view usage] : b.85.4.1 |beta-clip |dUTPase-like |dUTPase-like |Deoxyuridine 5'-triphosphate nucleotidohydrolase (dUTPase) |Mycobacterium tuberculosis, rv2697c [TaxId: 1773]
d4aooa_ : (ASP33) (PRO62) [view usage] : b.85.4.0 |beta-clip |dUTPase-like |automated matches |automated matches |Bacillus subtilis [TaxId: 1423]
d3ov6a1 : (ASP1053) (HIS1084) [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2j4ha_ : (GLY78) (GLY109) [view usage] : b.85.4.1 |beta-clip |dUTPase-like |dUTPase-like |Deoxycytidine triphosphate deaminase (dCTP deaminase) |Escherichia coli [TaxId: 562]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
b.19, i.1, b.29, d.153, b.18, b.2, d.96, b.85, b.1, i.16, b.34, i.12, d.113, d.290, c.106, f.6