Tableau information
Concept source: d2gqra_ amino acid (a.a.) range (ALA12)(ASP44)
nSSEs in this Concept: 4
String of secondary struct.elems. (SSEs) defining this concept: EEEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(ALA12) (SER17) E1
(ASP22) (PHE28) E2
(ASN30) (GLY35) E3
(ARG39) (ASP44) E4
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 154.5° E2
E3 122.3° -79.0° E3
E4 -72.8° 92.2° 156.8°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±13.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d2zhra_ : (LEU84) (LYS107) [view usage] : b.50.1.2 |Acid proteases |Acid proteases |Pepsin-like |beta-secretase (memapsin) |Human (Homo sapiens) [TaxId: 9606]
d1hpga_ : (VAL167) (GLY192) [view usage] : b.47.1.1 |Trypsin-like serine proteases |Trypsin-like serine proteases |Prokaryotic proteases |Glutamic acid-specific protease |Streptomyces griseus [TaxId: 1911]
d3urfa_ : (THR243) (GLY279) [view usage] : b.22.1.1 |TNF-like |TNF-like |TNF-like |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2uzxa2 : (GLU241) (ILE271) [view usage] : b.1.18.0 |Immunoglobulin-like beta-sandwich |E set domains |automated matches |automated matches |Listeria monocytogenes [TaxId: 169963]
d1fjgl_ : (ARG41) (GLY72) [view usage] : b.40.4.5 |OB-fold |Nucleic acid-binding proteins |Cold shock DNA-binding domain-like |Ribosomal protein S12 |Thermus thermophilus [TaxId: 274]
d41bia_ : (LEU69) (SER114) [view usage] : b.42.1.2 |beta-Trefoil |Cytokine |Interleukin-1 (IL-1) |Interleukin-1beta |Human (Homo sapiens) [TaxId: 9606]
d1ivoa3 : (LEU243) (LYS269) [view usage] : g.3.9.1 |Knottins (small inhibitors, toxins, lectins) |Growth factor receptor domain |Growth factor receptor domain |EGF receptor Cys-rich domains |Human (Homo sapiens) [TaxId: 9606]
d1fl7d_ : (ILE8) (CYS51) [view usage] : g.17.1.4 |Cystine-knot cytokines |Cystine-knot cytokines |Gonadodropin/Follitropin |Follicle stimulating hormone, follitropin, beta chain |Human (Homo sapiens) [TaxId: 9606]
d2au7a_ : (ASN54) (ARG86) [view usage] : b.40.5.1 |OB-fold |Inorganic pyrophosphatase |Inorganic pyrophosphatase |Inorganic pyrophosphatase |Escherichia coli [TaxId: 562]
d1f1xa2 : (PHE254) (ASN286) [view usage] : d.32.1.3 |Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase |Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase |Extradiol dioxygenases |Homoprotocatechuate 2,3-dioxygenase |Brevibacterium fuscum [TaxId: 47914]
d4jysa_ : (ASP76) (GLU101) [view usage] : d.26.1.0 |FKBP-like |FKBP-like |automated matches |automated matches |Plasmodium vivax [TaxId: 126793]
d4jysa_ : (ILE104) (GLN139) [view usage] : d.26.1.0 |FKBP-like |FKBP-like |automated matches |automated matches |Plasmodium vivax [TaxId: 126793]
d2rmpa_ : (ASP94) (GLY116) [view usage] : b.50.1.2 |Acid proteases |Acid proteases |Pepsin-like |Acid protease |Rhizomucor miehei [TaxId: 4839]
d1l3aa_ : (PRO112) (SER154) [view usage] : d.18.1.2 |ssDNA-binding transcriptional regulator domain |ssDNA-binding transcriptional regulator domain |Plant transcriptional regulator PBF-2 |Plant transcriptional regulator PBF-2 |Potato (Solanum tuberosum) [TaxId: 4113]
d4mqwb_ : (ILE8) (CYS51) [view usage] : g.17.1.4 |Cystine-knot cytokines |Cystine-knot cytokines |Gonadodropin/Follitropin |Follicle stimulating hormone, follitropin, beta chain |Human (Homo sapiens) [TaxId: 9606]
d1eqqa_ : (LEU83) (LEU112) [view usage] : b.40.4.3 |OB-fold |Nucleic acid-binding proteins |Single strand DNA-binding domain, SSB |ssDNA-binding protein |Escherichia coli [TaxId: 562]
d1e4eb2 : (CYS213) (PRO261) [view usage] : d.142.1.1 |ATP-grasp |Glutathione synthetase ATP-binding domain-like |ATP-binding domain of peptide synthetases |D-alanine:D-lactate ligase VanA, C-domain |Enterococcus faecium [TaxId: 1352]
d1i1qa_ : (ALA34) (ALA72) [view usage] : d.161.1.1 |ADC synthase |ADC synthase |ADC synthase |Anthranilate synthase aminodeoxyisochorismate synthase/lyase subunit, TrpE |Salmonella typhimurium [TaxId: 90371]
d3keba_ : (ASP3) (PHE29) [view usage] : c.47.1.0 |Thioredoxin fold |Thioredoxin-like |automated matches |automated matches |Chromobacterium violaceum [TaxId: 536]
d3be1a2 : (LEU249) (THR275) [view usage] : g.3.9.0 |Knottins (small inhibitors, toxins, lectins) |Growth factor receptor domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1eqqd_ : (LEU683) (LEU712) [view usage] : b.40.4.3 |OB-fold |Nucleic acid-binding proteins |Single strand DNA-binding domain, SSB |ssDNA-binding protein |Escherichia coli [TaxId: 562]
d1vpka1 : (GLY40) (PHE68) [view usage] : d.131.1.1 |DNA clamp |DNA clamp |DNA polymerase III, beta subunit |DNA polymerase III, beta subunit |Thermotoga maritima [TaxId: 2336]
d2omza1 : (TRP417) (THR446) [view usage] : b.1.18.15 |Immunoglobulin-like beta-sandwich |E set domains |Internalin Ig-like domain |Internalin A |Listeria monocytogenes [TaxId: 1639]
d1slia2 : (LEU418) (HIS462) [view usage] : b.68.1.1 |6-bladed beta-propeller |Sialidases |Sialidases (neuraminidases) |Leech intramolecular trans-sialidase, C-terminal domain |North american leech (Macrobdella decora) [TaxId: 6405]
d1zunb2 : (MSE338) (PRO363) [view usage] : b.44.1.1 |Elongation factor/aminomethyltransferase common domain |EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain |EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain |Sulfate adenylate transferase subunit cysN/C, EF-Tu domain 3-like domain |Pseudomonas syringae pv. tomato [TaxId: 323]
d2d1za2 : (LEU366) (GLY400) [view usage] : b.42.2.0 |beta-Trefoil |Ricin B-like lectins |automated matches |automated matches |Streptomyces olivaceoviridis [TaxId: 1921]
d1iu4a_ : (ASN239) (GLY275) [view usage] : d.3.1.8 |Cysteine proteinases |Cysteine proteinases |Microbial transglutaminase |Microbial transglutaminase |Streptoverticillium mobaraense [TaxId: 35621]
d4kqqa1 : (ARG193) (LEU221) [view usage] : d.175.1.0 |Penicillin binding protein dimerisation domain |Penicillin binding protein dimerisation domain |automated matches |automated matches |Pseudomonas aeruginosa [TaxId: 208964]
d3nuaa_ : (ALA13) (GLU45) [view usage] : d.143.1.0 |SAICAR synthase-like |SAICAR synthase-like |automated matches |automated matches |Clostridium perfringens [TaxId: 195103]
d1kv7a1 : (GLY55) (GLN81) [view usage] : b.6.1.3 |Cupredoxin-like |Cupredoxins |Multidomain cupredoxins |multi-copper oxidase CueO |Escherichia coli [TaxId: 562]
d4eeua_ : (THR452) (GLN489) [view usage] : d.110.3.6 |Profilin-like |PYP-like sensor domain (PAS domain) |Flavin-binding PAS domain |automated matches |Thale cress (Arabidopsis thaliana) [TaxId: 3702]
d2cu5a_ : (VAL92) (LEU128) [view usage] : d.273.1.0 |YjbQ-like |YjbQ-like |automated matches |automated matches |Thermus thermophilus HB8 [TaxId: 300852]
d1m9sa1 : (GLU241) (ILE271) [view usage] : b.1.18.15 |Immunoglobulin-like beta-sandwich |E set domains |Internalin Ig-like domain |Internalin B |Listeria monocytogenes [TaxId: 1639]
d2cu5b_ : (VAL92) (LEU128) [view usage] : d.273.1.0 |YjbQ-like |YjbQ-like |automated matches |automated matches |Thermus thermophilus HB8 [TaxId: 300852]
d1eqqb_ : (LEU283) (LEU312) [view usage] : b.40.4.3 |OB-fold |Nucleic acid-binding proteins |Single strand DNA-binding domain, SSB |ssDNA-binding protein |Escherichia coli [TaxId: 562]
d2o5fb_ : (GLU7) (ARG52) [view usage] : d.113.1.2 |Nudix |Nudix |IPP isomerase-like |Hypothetical protein DR0079 |Deinococcus radiodurans str. R1 (Deinococcus radiodurans R1) [TaxId: 243230]
d1sddb4 : (THR2113) (PHE2150) [view usage] : b.18.1.2 |Galactose-binding domain-like |Galactose-binding domain-like |Discoidin domain (FA58C, coagulation factor 5/8 C-terminal domain) |C2 domain of factor V |Cow (Bos taurus) [TaxId: 9913]
d2imld_ : (GLY11) (LYS46) [view usage] : b.45.1.4 |Split barrel-like |FMN-binding split barrel |MTH863-like |Hypothetical protein AF1834 |Archaeoglobus fulgidus [TaxId: 2234]
d4iyaa_ : (GLY52) (ASN93) [view usage] : f.6.1.0 |Leukocidin-like |Leukocidin-like |automated matches |automated matches |Staphylococcus phage [TaxId: 71366]
d2x4mc_ : (TRP199) (PHE242) [view usage] : f.4.4.0 |Transmembrane beta-barrels |OMPT-like |automated matches |automated matches |Yersinia pestis [TaxId: 632]
d3l60a_ : (ASN237) (VAL272) [view usage] : c.43.1.0 |CoA-dependent acyltransferases |CoA-dependent acyltransferases |automated matches |automated matches |Mycobacterium tuberculosis [TaxId: 1773]
d1eo8a_ : (PRO21) (ASN54) [view usage] : b.19.1.2 |Viral protein domain |Viral protein domain |Influenza hemagglutinin headpiece |Hemagglutinin |Influenza A virus, different strains [TaxId: 11320]
d117ea_ : (GLN98) (THR131) [view usage] : b.40.5.1 |OB-fold |Inorganic pyrophosphatase |Inorganic pyrophosphatase |Inorganic pyrophosphatase |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1zsob_ : (HIS-1) (ASN41) [view usage] : b.166.1.1 |MAL13P1.257-like |MAL13P1.257-like |MAL13P1.257-like |Hypothetical protein MAL13P1.257 |Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
d1zsoa1 : (THR4) (ASN41) [view usage] : b.166.1.1 |MAL13P1.257-like |MAL13P1.257-like |MAL13P1.257-like |Hypothetical protein MAL13P1.257 |Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
d3hhqf_ : (GLN37) (ILE65) [view usage] : b.85.4.0 |beta-clip |dUTPase-like |automated matches |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d4tw1d_ : (GLY85) (ASP127) [view usage] : f.6.1.0 |Leukocidin-like |Leukocidin-like |automated matches |automated matches |Staphylococcus aureus [TaxId: 451516]
d2imla1 : (GLY11) (LYS46) [view usage] : b.45.1.4 |Split barrel-like |FMN-binding split barrel |MTH863-like |Hypothetical protein AF1834 |Archaeoglobus fulgidus [TaxId: 2234]
d1mqla_ : (PRO21) (ASN54) [view usage] : b.19.1.2 |Viral protein domain |Viral protein domain |Influenza hemagglutinin headpiece |Hemagglutinin |Influenza A virus, different strains [TaxId: 11320]
d2viua_ : (PRO21) (PRO55) [view usage] : b.19.1.2 |Viral protein domain |Viral protein domain |Influenza hemagglutinin headpiece |Hemagglutinin |Influenza A virus, different strains [TaxId: 11320]
d3u01a_ : (TYR64) (GLY100) [view usage] : d.5.1.1 |RNase A-like |RNase A-like |Ribonuclease A-like |automated matches |Frog (Rana pipiens) [TaxId: 8404]
d1ssna_ : (ALA85) (LYS136) [view usage] : d.15.5.1 |beta-Grasp (ubiquitin-like) |Staphylokinase/streptokinase |Staphylokinase/streptokinase |Staphylokinase |Staphylococcus aureus [TaxId: 1280]
d2imlb_ : (GLY11) (LYS46) [view usage] : b.45.1.4 |Split barrel-like |FMN-binding split barrel |MTH863-like |Hypothetical protein AF1834 |Archaeoglobus fulgidus [TaxId: 2234]
d2o5fa_ : (GLU7) (ARG52) [view usage] : d.113.1.2 |Nudix |Nudix |IPP isomerase-like |Hypothetical protein DR0079 |Deinococcus radiodurans str. R1 (Deinococcus radiodurans R1) [TaxId: 243230]
d2q11a_ : (ASP83) (LYS107) [view usage] : b.50.1.2 |Acid proteases |Acid proteases |Pepsin-like |beta-secretase (memapsin) |Human (Homo sapiens) [TaxId: 9606]
d1dp4a_ : (VAL391) (VAL420) [view usage] : c.93.1.1 |Periplasmic binding protein-like I |Periplasmic binding protein-like I |L-arabinose binding protein-like |Hormone binding domain of the atrial natriuretic peptide receptor |Norway rat (Rattus norvegicus) [TaxId: 10116]
d3d03a_ : (HIS217) (GLN251) [view usage] : d.159.1.11 |Metallo-dependent phosphatases |Metallo-dependent phosphatases |GpdQ-like |Glycerophosphodiesterase GpdQ |Enterobacter aerogenes [TaxId: 548]
d2rbla_ : (ILE833) (PHE889) [view usage] : b.1.2.1 |Immunoglobulin-like beta-sandwich |Fibronectin type III |Fibronectin type III |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3c0da1 : (GLU66) (GLU111) [view usage] : b.33.1.3 |ISP domain |ISP domain |NirD-like |NADH-nitrite reductase small subunit NirD |Vibrio parahaemolyticus [TaxId: 670]
d1vkza3 : (LEU185) (GLY224) [view usage] : d.142.1.2 |ATP-grasp |Glutathione synthetase ATP-binding domain-like |BC ATP-binding domain-like |Glycinamide ribonucleotide synthetase (GAR-syn), domain 2 |Thermotoga maritima [TaxId: 2336]
d3vmfa3 : (PRO345) (ILE387) [view usage] : b.44.1.0 |Elongation factor/aminomethyltransferase common domain |EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain |automated matches |automated matches |Aeropyrum pernix [TaxId: 272557]
d2ox7a1 : (ASP37) (GLN69) [view usage] : b.172.1.1 |YopX-like |YopX-like |YopX-like |Hypothetical protein EF1440 |Enterococcus faecalis [TaxId: 1351]
d1mcoh2 : (SER119) (SER157) [view usage] : b.1.1.2 |Immunoglobulin-like beta-sandwich |Immunoglobulin |C1 set domains (antibody constant domain-like) |Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma |Human (Homo sapiens) [TaxId: 9606]
d1p4ta_ : (LEU88) (TYR132) [view usage] : f.4.1.1 |Transmembrane beta-barrels |OMPA-like |Outer membrane protein |Outer membrane protein NspA |Neisseria meningitidis [TaxId: 487]
d2zjph1 : (HIS79) (GLY112) [view usage] : b.39.1.1 |Ribosomal protein L14 |Ribosomal protein L14 |Ribosomal protein L14 |Ribosomal protein L14 |Deinococcus radiodurans [TaxId: 1299]
d3bn6a_ : (THR71) (ASP106) [view usage] : b.18.1.0 |Galactose-binding domain-like |Galactose-binding domain-like |automated matches |automated matches |Cow (Bos taurus) [TaxId: 9913]
d3bzma_ : (TRP95) (LEU123) [view usage] : d.161.1.1 |ADC synthase |ADC synthase |ADC synthase |automated matches |Escherichia coli [TaxId: 562]
d1wcdj1 : (TYR214) (THR250) [view usage] : b.121.4.9 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Positive stranded ssRNA viruses |Birnaviridae-like VP |Birnavirus VP2 |Infectious bursal disease virus [TaxId: 10995]
d2ox5a_ : (ALA4) (ILE47) [view usage] : b.1.18.0 |Immunoglobulin-like beta-sandwich |E set domains |automated matches |automated matches |Paracoccus denitrificans [TaxId: 266]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
b.68, b.19, d.159, b.47, c.93, b.50, f.4, b.40, c.47, b.18, b.121, d.3, b.6, b.85, d.32, b.1, b.45, d.110, c.43, d.143,
b.42, d.142, d.131, d.273, b.22, d.5, d.15, d.175, d.113, d.26, g.17, b.33, b.44, f.6, d.161, d.18, g.3, b.172, b.166, b.39