Tableau information
Concept source: d3rn2b2 amino acid (a.a.) range (ASP308)(VAL336)
nSSEs in this Concept: 4
String of secondary struct.elems. (SSEs) defining this concept: EEEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(ASP308) (PHE314) E1
(PHE314) (LYS319) E2
(LYS323) (GLY329) E3
(SER332) (VAL336) E4
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 -95.5° E2
E3 66.3° 145.6° E3
E4 165.7° -97.2° -105.6°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±8.6° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d2oq0b1 : (ASP173) (ILE201) [view usage] : b.40.16.1 |OB-fold |HIN-2000 domain-like |HIN-200/IF120x domain |Gamma-interferon-inducible protein Ifi-16 |Human (Homo sapiens) [TaxId: 9606]
d2q9pa_ : (GLY72) (ASP106) [view usage] : d.113.1.1 |Nudix |Nudix |MutT-like |Diphosphoinositol polyphosphate phosphohydrolase |Human (Homo sapiens) [TaxId: 9606]
d2yrxa3 : (ALA356) (LYS383) [view usage] : b.84.2.0 |Barrel-sandwich hybrid |Rudiment single hybrid motif |automated matches |automated matches |Geobacillus kaustophilus [TaxId: 1462]
d4b6ma_ : (ARG159) (GLY225) [view usage] : b.34.10.0 |SH3-like barrel |Cap-Gly domain |automated matches |automated matches |Trypanosome (Trypanosoma brucei) [TaxId: 5691]
d1yvyb2 : (ALA1302) (PRO1331) [view usage] : c.91.1.0 |PEP carboxykinase-like |PEP carboxykinase-like |automated matches |automated matches |Anaerobiospirillum succiniciproducens [TaxId: 13335]
d3wp4a_ : (GLY93) (SER118) [view usage] : b.29.1.0 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |automated matches |automated matches |Neocallimastix patriciarum [TaxId: 4758]
d2fvva1 : (GLY72) (ASP106) [view usage] : d.113.1.1 |Nudix |Nudix |MutT-like |Diphosphoinositol polyphosphate phosphohydrolase |Human (Homo sapiens) [TaxId: 9606]
d2oq0a1 : (ASP173) (ILE201) [view usage] : b.40.16.1 |OB-fold |HIN-2000 domain-like |HIN-200/IF120x domain |Gamma-interferon-inducible protein Ifi-16 |Human (Homo sapiens) [TaxId: 9606]
d1umha_ : (ASP142) (ASP187) [view usage] : b.18.1.21 |Galactose-binding domain-like |Galactose-binding domain-like |F-box associated region, FBA |F-box only protein 2 |Mouse (Mus musculus) [TaxId: 10090]
d2rf8b_ : (TYR52) (LYS74) [view usage] : d.153.1.0 |Ntn hydrolase-like |N-terminal nucleophile aminohydrolases (Ntn hydrolases) |automated matches |automated matches |Clostridium perfringens [TaxId: 1502]
d1o7ia_ : (VAL69) (GLU95) [view usage] : b.40.4.3 |OB-fold |Nucleic acid-binding proteins |Single strand DNA-binding domain, SSB |Archaeal ssDNA-binding protein |Sulfolobus solfataricus [TaxId: 2287]
d1k3ca1 : (ALA308) (PRO337) [view usage] : c.91.1.1 |PEP carboxykinase-like |PEP carboxykinase-like |PEP carboxykinase C-terminal domain |Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) |Escherichia coli [TaxId: 562]
d4jbmb2 : (ASP156) (ALA187) [view usage] : b.40.16.0 |OB-fold |HIN-2000 domain-like |automated matches |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d4b6mb_ : (ASP158) (GLY225) [view usage] : b.34.10.0 |SH3-like barrel |Cap-Gly domain |automated matches |automated matches |Trypanosome (Trypanosoma brucei) [TaxId: 5691]
d1otca1 : (ASP118) (ASP152) [view usage] : b.40.4.3 |OB-fold |Nucleic acid-binding proteins |Single strand DNA-binding domain, SSB |Telomere end binding protein alpha subunit |Oxytricha nova [TaxId: 200597]
d4h69e_ : (SER26) (PHE52) [view usage] : b.159.1.0 |AOC barrel-like |Allene oxide cyclase-like |automated matches |automated matches |Physcomitrella patens [TaxId: 145481]
d1ytma2 : (ASN301) (PRO331) [view usage] : c.91.1.0 |PEP carboxykinase-like |PEP carboxykinase-like |automated matches |automated matches |Anaerobiospirillum succiniciproducens [TaxId: 13335]
d1qmca_ : (PHE223) (ARG269) [view usage] : b.34.7.1 |SH3-like barrel |DNA-binding domain of retroviral integrase |DNA-binding domain of retroviral integrase |DNA-binding domain of retroviral integrase |Human immunodeficiency virus type 1 [TaxId: 11676]
d2mnaa_ : (VAL68) (GLU98) [view usage] : b.40.4.3 |OB-fold |Nucleic acid-binding proteins |Single strand DNA-binding domain, SSB |automated matches |Sulfolobus solfataricus [TaxId: 273057]
d1xb2b3 : (GLY223) (ILE252) [view usage] : d.43.1.1 |EF-Ts domain-like |Elongation factor Ts (EF-Ts), dimerisation domain |Elongation factor Ts (EF-Ts), dimerisation domain |Elongation factor Ts (EF-Ts), dimerisation domain |Cow (Bos taurus), mitochondrial [TaxId: 9913]
d1jb7a1 : (ASP118) (SER150) [view usage] : b.40.4.3 |OB-fold |Nucleic acid-binding proteins |Single strand DNA-binding domain, SSB |Telomere end binding protein alpha subunit |Oxytricha nova [TaxId: 200597]
d3m1ib_ : (ASN137) (ALA165) [view usage] : b.55.1.0 |PH domain-like barrel |PH domain-like |automated matches |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1miua5 : (LEU3037) (ALA3066) [view usage] : b.40.4.3 |OB-fold |Nucleic acid-binding proteins |Single strand DNA-binding domain, SSB |OB-fold domains of BRCA2 |Mouse (Mus musculus) [TaxId: 10090]
d2yrwa3 : (ALA356) (LYS383) [view usage] : b.84.2.0 |Barrel-sandwich hybrid |Rudiment single hybrid motif |automated matches |automated matches |Geobacillus kaustophilus [TaxId: 1462]
d2crva_ : (GLY38) (HIS65) [view usage] : b.43.3.0 |Reductase/isomerase/elongation factor common domain |Translation proteins |automated matches |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d2fhra1 : (GLY497) (LYS521) [view usage] : b.29.1.0 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |automated matches |automated matches |Trypanosoma rangeli [TaxId: 5698]
d4jesb_ : (ASP88) (GLU118) [view usage] : d.35.1.0 |Heme-binding protein A (HasA) |Heme-binding protein A (HasA) |automated matches |automated matches |Yersinia pestis [TaxId: 632]
d1fgub2 : (VAL375) (ASN402) [view usage] : b.40.4.3 |OB-fold |Nucleic acid-binding proteins |Single strand DNA-binding domain, SSB |Replication protein A 70 KDa subunit (RPA70) |Human (Homo sapiens) [TaxId: 9606]
d2c1ua2 : (GLN223) (ARG260) [view usage] : a.3.1.0 |Cytochrome c |Cytochrome c |automated matches |automated matches |Paracoccus pantotrophus [TaxId: 82367]
d1ihva_ : (ASN222) (ARG269) [view usage] : b.34.7.1 |SH3-like barrel |DNA-binding domain of retroviral integrase |DNA-binding domain of retroviral integrase |DNA-binding domain of retroviral integrase |Human immunodeficiency virus type 1 [TaxId: 11676]
d4jbja1 : (LYS68) (GLU92) [view usage] : b.40.16.0 |OB-fold |HIN-2000 domain-like |automated matches |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d1mjea5 : (LEU3037) (ALA3066) [view usage] : b.40.4.3 |OB-fold |Nucleic acid-binding proteins |Single strand DNA-binding domain, SSB |OB-fold domains of BRCA2 |Mouse (Mus musculus) [TaxId: 10090]
d1iyjb5 : (LEU3046) (ALA3075) [view usage] : b.40.4.3 |OB-fold |Nucleic acid-binding proteins |Single strand DNA-binding domain, SSB |OB-fold domains of BRCA2 |Norway rat (Rattus norvegicus) [TaxId: 10116]
d1o7ib_ : (GLN67) (GLU95) [view usage] : b.40.4.3 |OB-fold |Nucleic acid-binding proteins |Single strand DNA-binding domain, SSB |Archaeal ssDNA-binding protein |Sulfolobus solfataricus [TaxId: 2287]
d1qzga_ : (PRO104) (PRO133) [view usage] : b.40.4.3 |OB-fold |Nucleic acid-binding proteins |Single strand DNA-binding domain, SSB |Protection of telomeres protein 1, Pot1 |Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
d2rrka_ : (GLU65) (GLY96) [view usage] : d.113.1.0 |Nudix |Nudix |automated matches |automated matches |Escherichia coli K-12 [TaxId: 83333]
d2agsa1 : (GLY497) (LYS521) [view usage] : b.29.1.0 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |automated matches |automated matches |Trypanosoma rangeli [TaxId: 5698]
d3rn2a1 : (ILE206) (ASP229) [view usage] : b.40.16.0 |OB-fold |HIN-2000 domain-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d4jbja2 : (ASP171) (GLY199) [view usage] : b.40.16.0 |OB-fold |HIN-2000 domain-like |automated matches |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d2a6xb_ : (GLN31) (TRP58) [view usage] : b.29.1.13 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Lectin leg-like |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1ph1a1 : (ASP118) (SER150) [view usage] : b.40.4.3 |OB-fold |Nucleic acid-binding proteins |Single strand DNA-binding domain, SSB |Telomere end binding protein alpha subunit |Oxytricha nova [TaxId: 200597]
d2i0qa1 : (ASP118) (SER150) [view usage] : b.40.4.3 |OB-fold |Nucleic acid-binding proteins |Single strand DNA-binding domain, SSB |Telomere end binding protein alpha subunit |Oxytricha nova [TaxId: 200597]
d2aaib1 : (MET5) (ARG53) [view usage] : b.42.2.1 |beta-Trefoil |Ricin B-like lectins |Ricin B-like |Plant cytotoxin B-chain (lectin) |Castor bean (Ricinus communis), Ricin [TaxId: 3988]
d4jeth_ : (ASP88) (GLU118) [view usage] : d.35.1.0 |Heme-binding protein A (HasA) |Heme-binding protein A (HasA) |automated matches |automated matches |Yersinia pestis [TaxId: 632]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
b.29, b.40, d.153, b.18, b.42, b.84, b.55, b.34, c.91, a.3, b.43, d.113, b.159, d.35, d.43