Tableau information
Concept source: d1hxrb_ amino acid (a.a.) range (GLU78)(ALA116)
nSSEs in this Concept: 4
String of secondary struct.elems. (SSEs) defining this concept: EEEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(GLU78) (LYS84) E1
(ASN88) (CYS94) E2
(ILE102) (CYS106) E3
(ASN111) (ALA116) E4
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 140.0° E2
E3 -57.7° 158.7° E3
E4 97.1° -54.2° 146.4°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±7.8° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1wcqc3 : (PRO65) (SER118) [view usage] : b.68.1.1 |6-bladed beta-propeller |Sialidases |Sialidases (neuraminidases) |automated matches |Micromonospora viridifaciens [TaxId: 1881]
d1osya_ : (PRO39) (PHE76) [view usage] : b.1.21.1 |Immunoglobulin-like beta-sandwich |Fungal immunomodulatory protein, FIP |Fungal immunomodulatory protein, FIP |Fungal immunomodulatory protein, FIP |Golden needle mushroom (Flammulina velutipes) [TaxId: 38945]
d1nj4a1 : (ASP295) (GLN350) [view usage] : b.105.1.1 |Penicillin-binding protein associated domain |Penicillin-binding protein associated domain |PBP5 C-terminal domain-like |Penicillin-binding protein 5, C-terminal domain |Escherichia coli [TaxId: 562]
d2ynaa_ : (THR105) (GLY141) [view usage] : b.47.1.0 |Trypsin-like serine proteases |Trypsin-like serine proteases |automated matches |automated matches |Tylonycteris bat coronavirus hku4 [TaxId: 694007]
d4g16a_ : (VAL36) (PRO75) [view usage] : d.144.1.7 |Protein kinase-like (PK-like) |Protein kinase-like (PK-like) |Protein kinases, catalytic subunit |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1uy1a_ : (THR75) (ASN116) [view usage] : b.18.1.10 |Galactose-binding domain-like |Galactose-binding domain-like |Family 6 carbohydrate binding module, CBM6 |Putative xylanase |Clostridium stercorarium [TaxId: 1510]
d3og8a_ : (CYS841) (ILE889) [view usage] : b.88.2.1 |Mss4-like |RIG-I C-terminal-like |RIG-I C-terminal domain-like |RIG-I C-terminal domain |Human (Homo sapiens) [TaxId: 9606]
d1ur9a1 : (THR460) (VAL495) [view usage] : b.72.2.1 |WW domain-like |Carbohydrate binding domain |Carbohydrate binding domain |Chitinase B, C-terminal domain |Serratia marcescens [TaxId: 615]
d2pvsb2 : (SER337) (PHE391) [view usage] : b.12.1.0 |Lipase/lipooxygenase domain (PLAT/LH2 domain) |Lipase/lipooxygenase domain (PLAT/LH2 domain) |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3hg3b2 : (GLN327) (ALA368) [view usage] : b.71.1.1 |Glycosyl hydrolase domain |Glycosyl hydrolase domain |alpha-Amylases, C-terminal beta-sheet domain |Melibiase |Human (Homo sapiens) [TaxId: 9606]
d3d9wa_ : (ASP154) (THR195) [view usage] : d.3.1.0 |Cysteine proteinases |Cysteine proteinases |automated matches |automated matches |Nocardia farcinica [TaxId: 37329]
d1uloa_ : (GLY51) (LEU89) [view usage] : b.18.1.14 |Galactose-binding domain-like |Galactose-binding domain-like |CBM4/9 |Cellulose-binding domain of cellulase C |Cellulomonas fimi [TaxId: 1708]
d2a71d_ : (SER17) (THR47) [view usage] : b.29.1.13 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Lectin leg-like |Emp47p N-terminal domain |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d3hg4b2 : (GLN327) (ALA368) [view usage] : b.71.1.1 |Glycosyl hydrolase domain |Glycosyl hydrolase domain |alpha-Amylases, C-terminal beta-sheet domain |Melibiase |Human (Homo sapiens) [TaxId: 9606]
d4eh1b1 : (GLY29) (GLY77) [view usage] : b.43.4.0 |Reductase/isomerase/elongation factor common domain |Riboflavin synthase domain-like |automated matches |automated matches |Vibrio cholerae [TaxId: 243277]
d1yuaa2 : (MET85) (LYS122) [view usage] : g.41.3.3 |Rubredoxin-like |Zinc beta-ribbon |Prokaryotic DNA topoisomerase I, a C-terminal fragment |Prokaryotic DNA topoisomerase I, a C-terminal fragment |Escherichia coli [TaxId: 562]
d1qmya_ : (GLY140) (PRO169) [view usage] : d.3.1.2 |Cysteine proteinases |Cysteine proteinases |FMDV leader protease |FMDV leader protease |Foot-and-mouth disease virus [TaxId: 12110]
d1j0sa_ : (PRO43) (GLU85) [view usage] : b.42.1.2 |beta-Trefoil |Cytokine |Interleukin-1 (IL-1) |Interleukin-18 |Human (Homo sapiens) [TaxId: 9606]
d4ffva1 : (ASP295) (PRO338) [view usage] : b.70.3.1 |8-bladed beta-propeller |DPP6 N-terminal domain-like |DPP6 N-terminal domain-like |automated matches |Norway rat (Rattus norvegicus) [TaxId: 10116]
d1osyb_ : (PRO39) (PHE76) [view usage] : b.1.21.1 |Immunoglobulin-like beta-sandwich |Fungal immunomodulatory protein, FIP |Fungal immunomodulatory protein, FIP |Fungal immunomodulatory protein, FIP |Golden needle mushroom (Flammulina velutipes) [TaxId: 38945]
d3t2ca_ : (PRO272) (ASP319) [view usage] : d.280.1.1 |Sulfolobus fructose-1,6-bisphosphatase-like |Sulfolobus fructose-1,6-bisphosphatase-like |Sulfolobus fructose-1,6-bisphosphatase-like |automated matches |Thermoproteus neutrophilus [TaxId: 444157]
d1g5aa1 : (ARG555) (THR589) [view usage] : b.71.1.1 |Glycosyl hydrolase domain |Glycosyl hydrolase domain |alpha-Amylases, C-terminal beta-sheet domain |Amylosucrase |Neisseria polysaccharea [TaxId: 489]
d2y32c_ : (ASN4) (ASN55) [view usage] : b.61.1.0 |Streptavidin-like |Avidin/streptavidin |automated matches |automated matches |Bradyrhizobium japonicum [TaxId: 375]
d2y32a_ : (ASN4) (ASN55) [view usage] : b.61.1.0 |Streptavidin-like |Avidin/streptavidin |automated matches |automated matches |Bradyrhizobium japonicum [TaxId: 375]
d2qyza_ : (ASP70) (ASN109) [view usage] : b.172.1.0 |YopX-like |YopX-like |automated matches |automated matches |Clostridium tetani [TaxId: 212717]
d4mtda_ : (PHE75) (CYS113) [view usage] : a.4.5.0 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |automated matches |automated matches |Escherichia coli [TaxId: 83333]
d3bu7a1 : (LYS312) (SER345) [view usage] : b.82.1.23 |Double-stranded beta-helix |RmlC-like cupins |Gentisate 1,2-dioxygenase-like |Gentisate 1,2-dioxygenase |Silicibacter pomeroyi [TaxId: 89184]
d1fzua_ : (PRO55) (GLU102) [view usage] : d.1.1.4 |Microbial ribonucleases |Microbial ribonucleases |Fungal ribonucleases |RNase T1 |Fungus (Aspergillus oryzae) [TaxId: 5062]
d1fwqa_ : (ASN79) (ALA116) [view usage] : b.88.1.1 |Mss4-like |Mss4-like |RabGEF Mss4 |RabGEF Mss4 |Human (Homo sapiens) [TaxId: 9606]
d1szna1 : (PRO319) (TRP368) [view usage] : b.71.1.1 |Glycosyl hydrolase domain |Glycosyl hydrolase domain |alpha-Amylases, C-terminal beta-sheet domain |Melibiase |Trichoderma reesei [TaxId: 51453]
d1a1xa_ : (LEU68) (LEU104) [view usage] : b.63.1.1 |Oncogene products |Oncogene products |Oncogene products |p13-MTCP1 |Human (Homo sapiens) [TaxId: 9606]
d3aaab_ : (PRO46) (PRO81) [view usage] : e.43.1.2 |Subunits of heterodimeric actin filament capping protein Capz |Subunits of heterodimeric actin filament capping protein Capz |Capz beta-1 subunit |Capz beta-1 subunit |Chicken (Gallus gallus) [TaxId: 9031]
d4hoha_ : (PRO55) (GLU102) [view usage] : d.1.1.4 |Microbial ribonucleases |Microbial ribonucleases |Fungal ribonucleases |RNase T1 |Fungus (Aspergillus oryzae) [TaxId: 5062]
d3wx5a_ : (ALA91) (LEU163) [view usage] : b.29.1.11 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Xylanase/endoglucanase 11/12 |automated matches |Uncultured bacterium [TaxId: 77133]
d3hg3a2 : (GLN327) (ALA368) [view usage] : b.71.1.1 |Glycosyl hydrolase domain |Glycosyl hydrolase domain |alpha-Amylases, C-terminal beta-sheet domain |Melibiase |Human (Homo sapiens) [TaxId: 9606]
d1qtta_ : (ASP13) (GLN47) [view usage] : b.63.1.1 |Oncogene products |Oncogene products |Oncogene products |p13-MTCP1 |Human (Homo sapiens) [TaxId: 9606]
d1qtta_ : (LEU69) (LEU106) [view usage] : b.63.1.1 |Oncogene products |Oncogene products |Oncogene products |p13-MTCP1 |Human (Homo sapiens) [TaxId: 9606]
d1nkga2 : (THR422) (SER468) [view usage] : b.18.1.25 |Galactose-binding domain-like |Galactose-binding domain-like |Rhamnogalacturonase B, RhgB, C-terminal domain |Rhamnogalacturonase B, RhgB, C-terminal domain |Fungus (Aspergillus aculeatus) [TaxId: 5053]
d4qbbb_ : (GLY140) (PRO169) [view usage] : d.3.1.2 |Cysteine proteinases |Cysteine proteinases |FMDV leader protease |automated matches |Foot-and-mouth disease virus [TaxId: 73482]
d1ktba1 : (GLN297) (THR337) [view usage] : b.71.1.1 |Glycosyl hydrolase domain |Glycosyl hydrolase domain |alpha-Amylases, C-terminal beta-sheet domain |Melibiase |Chicken (Gallus gallus) [TaxId: 9031]
d1ddka_ : (THR115) (LEU148) [view usage] : d.157.1.1 |Metallo-hydrolase/oxidoreductase |Metallo-hydrolase/oxidoreductase |Zn metallo-beta-lactamase |Zn metallo-beta-lactamase |Pseudomonas aeruginosa, IMP-1 [TaxId: 287]
d1swfb_ : (SER122) (SER45) [view usage] : b.61.1.1 |Streptavidin-like |Avidin/streptavidin |Avidin/streptavidin |Streptavidin |Streptomyces avidinii [TaxId: 1895]
d1hxrb_ : (GLU78) (ALA116) [view usage] : b.88.1.1 |Mss4-like |Mss4-like |RabGEF Mss4 |RabGEF Mss4 |Norway rat (Rattus norvegicus) [TaxId: 10116]
d1e15a1 : (THR460) (GLY496) [view usage] : b.72.2.1 |WW domain-like |Carbohydrate binding domain |Carbohydrate binding domain |Chitinase B, C-terminal domain |Serratia marcescens [TaxId: 615]
d2jeua_ : (SER135) (SER171) [view usage] : b.91.1.0 |E2 regulatory, transactivation domain |E2 regulatory, transactivation domain |automated matches |automated matches |Bovine papillomavirus type 1 [TaxId: 10559]
d1dqga_ : (LYS38) (LEU69) [view usage] : b.42.2.2 |beta-Trefoil |Ricin B-like lectins |Cysteine rich domain |Mannose receptor |Mouse (Mus musculus) [TaxId: 10090]
d2pkpa_ : (GLY99) (GLU137) [view usage] : c.8.2.0 |The "swivelling" beta/beta/alpha domain |LeuD/IlvD-like |automated matches |automated matches |Methanocaldococcus jannaschii [TaxId: 243232]
d1e15b1 : (GLY459) (GLY496) [view usage] : b.72.2.1 |WW domain-like |Carbohydrate binding domain |Carbohydrate binding domain |Chitinase B, C-terminal domain |Serratia marcescens [TaxId: 615]
d2fr2a1 : (LEU64) (LEU108) [view usage] : b.60.1.8 |Lipocalins |Lipocalins |Rv2717c-like |Hypothetical protein Rv2717c |Mycobacterium tuberculosis [TaxId: 1773]
d1qwta_ : (LEU272) (ASP314) [view usage] : b.26.1.3 |SMAD/FHA domain |SMAD/FHA domain |Interferon regulatory factor 3 (IRF3), transactivation domain |Interferon regulatory factor 3 (IRF3), transactivation domain |Human (Homo sapiens) [TaxId: 9606]
d2rd5c_ : (ARG45) (VAL76) [view usage] : d.58.5.0 |Ferredoxin-like |GlnB-like |automated matches |automated matches |Thale cress (Arabidopsis thaliana) [TaxId: 3702]
d1rzob2 : (GLN2172) (ILE2204) [view usage] : b.42.2.1 |beta-Trefoil |Ricin B-like lectins |Ricin B-like |Plant cytotoxin B-chain (lectin) |Castor bean (Ricinus communis), Ricin [TaxId: 3988]
d4mtdb_ : (PHE75) (GLU115) [view usage] : a.4.5.0 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |automated matches |automated matches |Escherichia coli [TaxId: 83333]
d1jmab1 : (ASP7) (GLU38) [view usage] : g.24.1.1 |TNF receptor-like |TNF receptor-like |TNF receptor-like |Cellular receptor HveA |Human (Homo sapiens) [TaxId: 9606]
d2lrqa_ : (ARG18) (PRO60) [view usage] : b.34.13.0 |SH3-like barrel |Chromo domain-like |automated matches |automated matches |Fruit fly (Drosophila melanogaster) [TaxId: 7227]
d1ca1a2 : (LYS256) (ASP313) [view usage] : b.12.1.3 |Lipase/lipooxygenase domain (PLAT/LH2 domain) |Lipase/lipooxygenase domain (PLAT/LH2 domain) |Alpha-toxin, C-terminal domain |Alpha-toxin, C-terminal domain |Clostridium perfringens, different strains [TaxId: 1502]
d1tuej_ : (ASP139) (TYR173) [view usage] : b.91.1.1 |E2 regulatory, transactivation domain |E2 regulatory, transactivation domain |E2 regulatory, transactivation domain |E2 regulatory, transactivation domain |Human papillomavirus type 18 [TaxId: 333761]
d1cv8a_ : (GLY115) (SER160) [view usage] : d.3.1.1 |Cysteine proteinases |Cysteine proteinases |Papain-like |Staphopain StpA |Staphylococcus aureus [TaxId: 1280]
d3vpea_ : (ALA124) (GLN164) [view usage] : d.157.1.0 |Metallo-hydrolase/oxidoreductase |Metallo-hydrolase/oxidoreductase |automated matches |automated matches |Serratia marcescens [TaxId: 615]
d1awea_ : (GLY48) (GLU92) [view usage] : b.55.1.1 |PH domain-like barrel |PH domain-like |Pleckstrin-homology domain (PH domain) |Son of sevenless-1 (sos-1) |Human (Homo sapiens) [TaxId: 9606]
d3byja_ : (GLY81) (GLY140) [view usage] : b.67.2.2 |5-bladed beta-propeller |Arabinanase/levansucrase/invertase |Levansucrase |Levansucrase |Bacillus subtilis [TaxId: 1423]
d4bboa_ : (ASN4) (ASN55) [view usage] : b.61.1.0 |Streptavidin-like |Avidin/streptavidin |automated matches |automated matches |Bradyrhizobium japonicum [TaxId: 375]
d4qbbc_ : (GLY140) (PRO169) [view usage] : d.3.1.2 |Cysteine proteinases |Cysteine proteinases |FMDV leader protease |automated matches |Foot-and-mouth disease virus [TaxId: 73482]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
b.68, b.70, b.82, d.58, b.29, b.67, b.47, d.157, d.144, b.60, b.18, d.3, b.1, b.42, c.8, b.55, b.26, b.34, b.91, a.4,
b.61, e.43, b.43, b.88, d.1, b.71, g.41, b.12, d.280, b.172, b.105, g.24, b.63, b.72