Tableau information
Concept source: d3a5zb2 amino acid (a.a.) range (ASP66)(ASP96)
nSSEs in this Concept: 4
String of secondary struct.elems. (SSEs) defining this concept: EEEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(ASP66) (ASN71) E1
(LEU75) (GLY79) E2
(TRP82) (ASN86) E3
(GLU91) (ASP96) E4
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 -107.5° E2
E3 87.3° 163.8° E3
E4 -101.4° -25.1° 159.6°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±10.2° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d2hzga1 : (SER2) (ALA46) [view usage] : d.54.1.0 |Enolase N-terminal domain-like |Enolase N-terminal domain-like |automated matches |automated matches |Rhodobacter sphaeroides [TaxId: 1063]
d1iz6a2 : (ILE71) (PRO100) [view usage] : b.40.4.5 |OB-fold |Nucleic acid-binding proteins |Cold shock DNA-binding domain-like |C-terminal domain of eukaryotic initiation translation factor 5a (eIF5a) |Pyrococcus horikoshii [TaxId: 53953]
d1wu2a1 : (GLU325) (GLY362) [view usage] : b.85.6.1 |beta-clip |MoeA C-terminal domain-like |MoeA C-terminal domain-like |Molybdenum cofactor biosynthesis protein MoeA, C-terminal domain |Pyrococcus horikoshii, PH1647 [TaxId: 53953]
d4a75a_ : (LEU31) (PHE66) [view usage] : b.40.4.0 |OB-fold |Nucleic acid-binding proteins |automated matches |automated matches |Xenopus (Silurana) tropicalis [TaxId: 8364]
d1xjva1 : (VAL23) (GLY64) [view usage] : b.40.4.3 |OB-fold |Nucleic acid-binding proteins |Single strand DNA-binding domain, SSB |Protection of telomeres protein 1, Pot1 |Human (Homo sapiens) [TaxId: 9606]
d2l15a_ : (MET1) (PHE34) [view usage] : b.40.4.5 |OB-fold |Nucleic acid-binding proteins |Cold shock DNA-binding domain-like |Major cold shock protein |Escherichia coli [TaxId: 562]
d3cpfa2 : (ILE84) (GLU110) [view usage] : b.40.4.0 |OB-fold |Nucleic acid-binding proteins |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2ocea4 : (GLY655) (HIS683) [view usage] : b.40.4.5 |OB-fold |Nucleic acid-binding proteins |Cold shock DNA-binding domain-like |Tex S1-domain |Pseudomonas aeruginosa [TaxId: 287]
d1v43a2 : (THR308) (PRO341) [view usage] : b.40.6.3 |OB-fold |MOP-like |ABC-transporter additional domain |Hypothetical protein PH0022, C-terminal domain |Pyrococcus horikoshii [TaxId: 53953]
d4jw0b_ : (MET1) (ALA44) [view usage] : b.40.15.1 |OB-fold |EutN/CcmL-like |EutN/CcmL-like |automated matches |Gloeobacter violaceus [TaxId: 251221]
d1mbmc_ : (ASP128) (GLY154) [view usage] : b.47.1.3 |Trypsin-like serine proteases |Trypsin-like serine proteases |Viral proteases |NSP4 proteinase |Equine arteritis virus, EAV [TaxId: 11047]
d3a5zb2 : (ASP66) (ASP96) [view usage] : b.40.4.0 |OB-fold |Nucleic acid-binding proteins |automated matches |automated matches |Escherichia coli [TaxId: 562]
d4a75e_ : (LEU31) (PHE66) [view usage] : b.40.4.0 |OB-fold |Nucleic acid-binding proteins |automated matches |automated matches |Xenopus (Silurana) tropicalis [TaxId: 8364]
d1mbma_ : (ASP128) (GLY154) [view usage] : b.47.1.3 |Trypsin-like serine proteases |Trypsin-like serine proteases |Viral proteases |NSP4 proteinase |Equine arteritis virus, EAV [TaxId: 11047]
d2khsa_ : (LEU7) (THR33) [view usage] : b.40.1.1 |OB-fold |Staphylococcal nuclease |Staphylococcal nuclease |Staphylococcal nuclease |Staphylococcus aureus [TaxId: 1280]
d1mbmd_ : (ASP128) (GLY154) [view usage] : b.47.1.3 |Trypsin-like serine proteases |Trypsin-like serine proteases |Viral proteases |NSP4 proteinase |Equine arteritis virus, EAV [TaxId: 11047]
d3u5gc_ : (THR5) (VAL41) [view usage] : i.1.1.1 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Ribosome complexes |Eukaryotic, cytoplasmic (80S ribosome functional complex) |Saccharomyces cerevisiae [TaxId: 559292]
d1iz6c2 : (ILE71) (PRO100) [view usage] : b.40.4.5 |OB-fold |Nucleic acid-binding proteins |Cold shock DNA-binding domain-like |C-terminal domain of eukaryotic initiation translation factor 5a (eIF5a) |Pyrococcus horikoshii [TaxId: 53953]
d3ulja_ : (GLN29) (PHE66) [view usage] : b.40.4.0 |OB-fold |Nucleic acid-binding proteins |automated matches |automated matches |Xenopus (Silurana) tropicalis [TaxId: 8364]
d3uljb_ : (GLN29) (PHE66) [view usage] : b.40.4.0 |OB-fold |Nucleic acid-binding proteins |automated matches |automated matches |Xenopus (Silurana) tropicalis [TaxId: 8364]
d2hd3a1 : (MSE1) (VAL42) [view usage] : b.40.15.1 |OB-fold |EutN/CcmL-like |EutN/CcmL-like |Ethanolamine utilization protein EutN |Escherichia coli [TaxId: 562]
d1yvca1 : (GLY16) (PRO44) [view usage] : b.40.4.12 |OB-fold |Nucleic acid-binding proteins |TRAM domain |Hypothetical protein MMP0076 |Methanococcus maripaludis [TaxId: 39152]
d2d9ua_ : (VAL10) (PRO44) [view usage] : b.34.13.2 |SH3-like barrel |Chromo domain-like |Chromo domain |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1xtnb_ : (CYS7) (ARG44) [view usage] : d.189.1.1 |PX domain |PX domain |PX domain |Serine/threonine-protein kinase Sgk3, Cisk |Mouse (Mus musculus) [TaxId: 10090]
d1slja_ : (ASN40) (PRO69) [view usage] : b.40.4.5 |OB-fold |Nucleic acid-binding proteins |Cold shock DNA-binding domain-like |S1-domain of Ribonuclease E |Escherichia coli [TaxId: 562]
d2ix1a2 : (THR562) (PRO590) [view usage] : b.40.4.5 |OB-fold |Nucleic acid-binding proteins |Cold shock DNA-binding domain-like |Exoribonuclease 2, RNB |Escherichia coli [TaxId: 562]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
i.1, b.47, b.40, b.85, b.34, d.54, d.189