Tableau information
Concept source: d1tdqa2 amino acid (a.a.) range (GLN122)(ALA168)
nSSEs in this Concept: 4
String of secondary struct.elems. (SSEs) defining this concept: EEEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(GLN122) (THR130) E1
(GLU134) (GLY146) E2
(THR149) (ASP155) E3
(GLY159) (ALA168) E4
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 148.4° E2
E3 -33.1° 148.3° E3
E4 154.6° -53.5° 143.1°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±12.1° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d3hhxa_ : (ALA149) (ASP201) [view usage] : b.3.6.0 |Prealbumin-like |Aromatic compound dioxygenase |automated matches |automated matches |Rhodococcus opacus [TaxId: 37919]
d1xe0d_ : (THR48) (GLY92) [view usage] : b.121.3.1 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Nucleoplasmin-like core domain |Nucleoplasmin-like core domain |Nucleophosmin (NO38) |African clawed frog (Xenopus laevis) [TaxId: 8355]
d3t5pb_ : (SER259) (GLY289) [view usage] : e.52.1.0 |NAD kinase/diacylglycerol kinase-like |NAD kinase/diacylglycerol kinase-like |automated matches |automated matches |Bacillus anthracis [TaxId: 260799]
d1u3na_ : (HIS44) (GLY84) [view usage] : b.1.8.0 |Immunoglobulin-like beta-sandwich |Cu,Zn superoxide dismutase-like |automated matches |automated matches |Bacillus subtilis [TaxId: 1423]
d1bwfo1 : (ILE6) (ASP48) [view usage] : c.55.1.4 |Ribonuclease H-like motif |Actin-like ATPase domain |Glycerol kinase |Glycerol kinase |Escherichia coli [TaxId: 562]
d4lpvb_ : (ASP30) (HIS79) [view usage] : b.1.2.0 |Immunoglobulin-like beta-sandwich |Fibronectin type III |automated matches |automated matches |Artificial gene [TaxId: 32630]
d1o8sa_ : (THR75) (THR121) [view usage] : b.18.1.10 |Galactose-binding domain-like |Galactose-binding domain-like |Family 6 carbohydrate binding module, CBM6 |Putative xylanase |Clostridium stercorarium [TaxId: 1510]
d2boia_ : (ARG63) (ASN109) [view usage] : b.115.1.0 |Calcium-mediated lectin |Calcium-mediated lectin |automated matches |automated matches |Chromobacterium violaceum [TaxId: 536]
d2q8ib_ : (PRO131) (GLU182) [view usage] : b.84.1.1 |Barrel-sandwich hybrid |Single hybrid motif |Biotinyl/lipoyl-carrier proteins and domains |Lipoyl domain of dihydrolipoamide acetyltransferase |Human (Homo sapiens) [TaxId: 9606]
d1a6ca1 : (GLU100) (PRO168) [view usage] : b.121.4.2 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Positive stranded ssRNA viruses |Comoviridae-like VP |Nepovirus capsid protein |TRSV (Tobacco ringspot virus) [TaxId: 12282]
d4lpva_ : (ASP30) (HIS79) [view usage] : b.1.2.0 |Immunoglobulin-like beta-sandwich |Fibronectin type III |automated matches |automated matches |Artificial gene [TaxId: 32630]
d1e57c_ : (LEU90) (SER158) [view usage] : b.121.4.6 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Positive stranded ssRNA viruses |Tymoviridae-like VP |Tymovirus coat protein |PHMV (Physalis mottle virus) [TaxId: 72539]
d1joba_ : (ASN169) (ASN218) [view usage] : b.94.1.1 |Olfactory marker protein |Olfactory marker protein |Olfactory marker protein |Olfactory marker protein |Mouse (Mus musculus) [TaxId: 10090]
d1rgxc_ : (LEU54) (LEU90) [view usage] : g.77.1.1 |Resistin |Resistin |Resistin |Resistin (ADSF, FIZZ3) |Mouse (Mus musculus) [TaxId: 10090]
d1z3ra_ : (ILE43) (GLY89) [view usage] : b.1.18.0 |Immunoglobulin-like beta-sandwich |E set domains |automated matches |automated matches |Omsk hemorrhagic fever virus [TaxId: 12542]
d2h5ua1 : (ALA6) (TRP65) [view usage] : b.6.1.0 |Cupredoxin-like |Cupredoxins |automated matches |automated matches |Trametes maxima [TaxId: 259368]
d1djib2 : (LEU697) (GLN755) [view usage] : b.7.1.1 |C2 domain-like |C2 domain (Calcium/lipid-binding domain, CaLB) |PLC-like (P variant) |PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain |Norway rat (Rattus norvegicus) [TaxId: 10116]
d2azeb1 : (MET261) (CYS298) [view usage] : e.63.1.2 |E2F-DP heterodimerization region |E2F-DP heterodimerization region |E2F dimerization segment |Transcription factor E2F1 |Human (Homo sapiens) [TaxId: 9606]
d4lpya_ : (ASP30) (SER80) [view usage] : b.1.2.0 |Immunoglobulin-like beta-sandwich |Fibronectin type III |automated matches |automated matches |Artificial gene [TaxId: 32630]
d1naea_ : (ASP72) (THR121) [view usage] : b.18.1.10 |Galactose-binding domain-like |Galactose-binding domain-like |Family 6 carbohydrate binding module, CBM6 |Putative xylanase |Clostridium stercorarium [TaxId: 1510]
d1e5ga1 : (PRO12) (GLY43) [view usage] : g.18.1.1 |Complement control module/SCR domain |Complement control module/SCR domain |Complement control module/SCR domain |Complement control protein |Vaccinia virus [TaxId: 10245]
d1yntf2 : (VAL2139) (PRO2175) [view usage] : b.6.2.1 |Cupredoxin-like |Major surface antigen p30, SAG1 |Major surface antigen p30, SAG1 |automated matches |Toxoplasma gondii [TaxId: 5811]
d1zvsa2 : (GLY1) (ALA49) [view usage] : d.19.1.1 |MHC antigen-recognition domain |MHC antigen-recognition domain |MHC antigen-recognition domain |Class I MHC, alpha-1 and alpha-2 domains |Rhesus monkey (Macaca mulatta) [TaxId: 9544]
d1ug9a3 : (ASP871) (PRO912) [view usage] : b.1.9.3 |Immunoglobulin-like beta-sandwich |CBD9-like |Glucodextranase, domain C |Glucodextranase, domain C |Arthrobacter globiformis [TaxId: 1665]
d1blbb1 : (GLY33) (ARG64) [view usage] : b.11.1.1 |gamma-Crystallin-like |gamma-Crystallin-like |Crystallins/Ca-binding development proteins |beta-Crystallin |Cow (Bos taurus) [TaxId: 9913]
d1n7ua_ : (LYS262) (ASP310) [view usage] : b.126.1.1 |Adsorption protein p2 |Adsorption protein p2 |Adsorption protein p2 |Adsorption protein p2 |Bacteriophage PRD1 [TaxId: 10658]
d1qm7a_ : (CYS23) (THR55) [view usage] : g.7.1.1 |Snake toxin-like |Snake toxin-like |Snake venom toxins |Fasciculin |Green mamba (Dendroaspis angusticeps) [TaxId: 8618]
d1ea9c2 : (THR551) (SER582) [view usage] : b.71.1.1 |Glycosyl hydrolase domain |Glycosyl hydrolase domain |alpha-Amylases, C-terminal beta-sheet domain |Maltogenic amylase |Bacillus sp., cyclomaltodextrinase [TaxId: 1409]
d1js8a2 : (GLU2792) (ARG2842) [view usage] : b.112.1.1 |C-terminal domain of mollusc hemocyanin |C-terminal domain of mollusc hemocyanin |C-terminal domain of mollusc hemocyanin |C-terminal domain of mollusc hemocyanin |Giant octopus (Octopus dofleini) [TaxId: 267067]
d2r9va1 : (GLU51) (ARG91) [view usage] : b.49.1.0 |Domain of alpha and beta subunits of F1 ATP synthase-like |N-terminal domain of alpha and beta subunits of F1 ATP synthase |automated matches |automated matches |Thermotoga maritima [TaxId: 243274]
d3zyra_ : (VAL136) (ASN186) [view usage] : b.29.1.1 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Legume lectins |automated matches |Platypodium elegans [TaxId: 115002]
d1we5a2 : (GLY205) (PRO245) [view usage] : b.30.5.11 |Supersandwich |Galactose mutarotase-like |YicI N-terminal domain-like |Putative glucosidase YicI, N-terminal domain |Escherichia coli [TaxId: 562]
d1djga2 : (LEU697) (ASP756) [view usage] : b.7.1.1 |C2 domain-like |C2 domain (Calcium/lipid-binding domain, CaLB) |PLC-like (P variant) |PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain |Norway rat (Rattus norvegicus) [TaxId: 10116]
d1rh7a_ : (THR45) (MET81) [view usage] : g.77.1.1 |Resistin |Resistin |Resistin |Resistin-like beta (FIZZ2) |Mouse (Mus musculus) [TaxId: 10090]
d1uf3b_ : (GLN191) (ARG228) [view usage] : d.159.1.6 |Metallo-dependent phosphatases |Metallo-dependent phosphatases |TT1561-like |Hypothetical protein TT1561 |Thermus thermophilus [TaxId: 274]
d1wwax_ : (THR292) (GLY344) [view usage] : b.1.1.4 |Immunoglobulin-like beta-sandwich |Immunoglobulin |I set domains |High affinity nerve growth factor receptor TrkA, different domains |Human (Homo sapiens) [TaxId: 9606]
d1qhda2 : (VAL259) (ARG296) [view usage] : b.19.1.1 |Viral protein domain |Viral protein domain |Top domain of virus capsid protein |vp6, the major capsid protein of group A rotavirus |Bovine rotavirus [TaxId: 10927]
d1xffa_ : (ARG201) (LEU238) [view usage] : d.153.1.1 |Ntn hydrolase-like |N-terminal nucleophile aminohydrolases (Ntn hydrolases) |Class II glutamine amidotransferases |Glucosamine 6-phosphate synthase, N-terminal domain |Escherichia coli [TaxId: 562]
d1ie7b_ : (GLU26) (GLU84) [view usage] : b.85.3.1 |beta-clip |Urease, beta-subunit |Urease, beta-subunit |Urease, beta-subunit |Bacillus pasteurii [TaxId: 1474]
d3b7ma_ : (SER1) (GLU35) [view usage] : b.29.1.11 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Xylanase/endoglucanase 11/12 |automated matches |Rhodothermus marinus [TaxId: 29549]
d1m7xa2 : (GLY673) (ARG725) [view usage] : b.71.1.1 |Glycosyl hydrolase domain |Glycosyl hydrolase domain |alpha-Amylases, C-terminal beta-sheet domain |1,4-alpha-glucan branching enzyme |Escherichia coli [TaxId: 562]
d2cmza1 : (GLY141) (ASP170) [view usage] : e.76.1.2 |Viral glycoprotein ectodomain-like |Viral glycoprotein ectodomain-like |Spike glycoprotein-like |Spike glycoprotein |Vesicular stomatitis indiana virus [TaxId: 11277]
d4lpyb_ : (ASP30) (MET77) [view usage] : b.1.2.0 |Immunoglobulin-like beta-sandwich |Fibronectin type III |automated matches |automated matches |Artificial gene [TaxId: 32630]
d1lb5a_ : (ILE407) (GLY472) [view usage] : b.8.1.1 |TRAF domain-like |TRAF domain-like |MATH domain |TNF receptor associated factor 6 (TRAF6) |Human (Homo sapiens) [TaxId: 9606]
d1a7ha_ : (HIS122) (LYS153) [view usage] : b.11.1.1 |gamma-Crystallin-like |gamma-Crystallin-like |Crystallins/Ca-binding development proteins |gamma-Crystallin |Cow (Bos taurus), isoform S [TaxId: 9913]
d4pofa_ : (SER133) (ASP173) [view usage] : b.40.4.0 |OB-fold |Nucleic acid-binding proteins |automated matches |automated matches |Pyrococcus furiosus [TaxId: 186497]
d1bd7a_ : (SER122) (ASP153) [view usage] : b.11.1.1 |gamma-Crystallin-like |gamma-Crystallin-like |Crystallins/Ca-binding development proteins |beta-Crystallin |Norway rat (Rattus norvegicus), isoform E [TaxId: 10116]
d3hj8a_ : (ALA149) (PRO199) [view usage] : b.3.6.0 |Prealbumin-like |Aromatic compound dioxygenase |automated matches |automated matches |Rhodococcus opacus [TaxId: 37919]
d1ji6a1 : (ARG567) (ASN615) [view usage] : b.18.1.3 |Galactose-binding domain-like |Galactose-binding domain-like |delta-Endotoxin, C-terminal domain |delta-Endotoxin, C-terminal domain |Bacillus thuringiensis, CRY3bb1 [TaxId: 1428]
d1niaa2 : (TYR263) (TYR293) [view usage] : b.6.1.3 |Cupredoxin-like |Cupredoxins |Multidomain cupredoxins |Nitrite reductase, NIR |Achromobacter cycloclastes [TaxId: 223]
d4nrja_ : (PRO307) (ALA331) [view usage] : b.19.1.2 |Viral protein domain |Viral protein domain |Influenza hemagglutinin headpiece |Hemagglutinin |Influenza b virus
d1m53a1 : (GLU543) (VAL594) [view usage] : b.71.1.1 |Glycosyl hydrolase domain |Glycosyl hydrolase domain |alpha-Amylases, C-terminal beta-sheet domain |Isomaltulose synthase PalI |Klebsiella sp., lx3 [TaxId: 576]
d4r5jc1 : (LEU397) (VAL440) [view usage] : b.130.1.1 |Heat shock protein 70kD (HSP70), peptide-binding domain |Heat shock protein 70kD (HSP70), peptide-binding domain |Heat shock protein 70kD (HSP70), peptide-binding domain |automated matches |Escherichia coli [TaxId: 83333]
d4r5jc1 : (GLY455) (LYS502) [view usage] : b.130.1.1 |Heat shock protein 70kD (HSP70), peptide-binding domain |Heat shock protein 70kD (HSP70), peptide-binding domain |Heat shock protein 70kD (HSP70), peptide-binding domain |automated matches |Escherichia coli [TaxId: 83333]
d1xp4a1 : (ASP327) (GLU385) [view usage] : b.105.1.1 |Penicillin-binding protein associated domain |Penicillin-binding protein associated domain |PBP5 C-terminal domain-like |D,D-carboxypeptidase DacA, C-terminal domain |Pneumococcus (Streptococcus pneumoniae) [TaxId: 1313]
d1blbd1 : (GLY33) (ARG64) [view usage] : b.11.1.1 |gamma-Crystallin-like |gamma-Crystallin-like |Crystallins/Ca-binding development proteins |beta-Crystallin |Cow (Bos taurus) [TaxId: 9913]
d1ok3a1 : (GLY5) (LYS51) [view usage] : g.18.1.1 |Complement control module/SCR domain |Complement control module/SCR domain |Complement control module/SCR domain |Complement decay-accelerating factor (Daf, CD55) |Human (Homo sapiens) [TaxId: 9606]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
b.19, d.159, b.29, b.30, b.40, c.55, d.153, b.18, b.121, b.6, b.85, b.1, b.84, d.19, b.11, b.7, b.3, b.115, b.71, b.130,
e.52, g.18, b.49, g.7, e.76, b.126, b.8, b.105, g.77, b.94, b.112, e.63