Tableau information
Concept source: d1oh4a_ amino acid (a.a.) range (ALA47)(PRO102)
nSSEs in this Concept: 4
String of secondary struct.elems. (SSEs) defining this concept: EEEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(ALA47) (PRO55) E1
(ASP59) (LYS68) E2
(GLU76) (PRO85) E3
(GLU88) (PRO102) E4
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 152.8° E2
E3 -68.4° 120.2° E3
E4 114.8° -44.3° 151.2°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±13.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1ggtb3 : (PRO675) (ARG727) [view usage] : b.1.5.1 |Immunoglobulin-like beta-sandwich |Transglutaminase, two C-terminal domains |Transglutaminase, two C-terminal domains |Transglutaminase, two C-terminal domains |Human (Homo sapiens), blood isozyme [TaxId: 9606]
d4hatb_ : (GLY109) (ALA159) [view usage] : b.55.1.0 |PH domain-like barrel |PH domain-like |automated matches |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d3kq7a_ : (THR7) (ALA40) [view usage] : d.144.1.7 |Protein kinase-like (PK-like) |Protein kinase-like (PK-like) |Protein kinases, catalytic subunit |MAP kinase p38 |Human (Homo sapiens) [TaxId: 9606]
d2haqa_ : (HIS77) (ALA125) [view usage] : b.62.1.1 |Cyclophilin-like |Cyclophilin-like |Cyclophilin (peptidylprolyl isomerase) |automated matches |Leishmania donovani [TaxId: 5661]
d1xwna1 : (HIS54) (ALA103) [view usage] : b.62.1.1 |Cyclophilin-like |Cyclophilin-like |Cyclophilin (peptidylprolyl isomerase) |Peptidyl-prolyl cis-trans isomerase-like 1, PPIL1 |Human (Homo sapiens) [TaxId: 9606]
d2orxa2 : (ALA537) (GLY582) [view usage] : b.18.1.2 |Galactose-binding domain-like |Galactose-binding domain-like |Discoidin domain (FA58C, coagulation factor 5/8 C-terminal domain) |B1 domain of neuropilin-1 |Norway rat (Rattus norvegicus) [TaxId: 10116]
d4lxha_ : (GLU6) (GLY40) [view usage] : c.69.1.0 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |automated matches |automated matches |Sphingomonas wittichii [TaxId: 392499]
d1e0rb_ : (GLY327) (GLY363) [view usage] : c.8.5.2 |The "swivelling" beta/beta/alpha domain |GroEL apical domain-like |Group II chaperonin (CCT, TRIC), apical domain |Thermosome, A-domain |Thermoplasma acidophilum, beta chain [TaxId: 2303]
d1i6va2 : (ILE129) (SER172) [view usage] : d.181.1.1 |Insert subdomain of RNA polymerase alpha subunit |Insert subdomain of RNA polymerase alpha subunit |Insert subdomain of RNA polymerase alpha subunit |RNA polymerase alpha subunit |Thermus aquaticus [TaxId: 271]
d2nn6i2 : (THR26) (VAL55) [view usage] : b.84.4.2 |Barrel-sandwich hybrid |Ribosomal L27 protein-like |ECR1 N-terminal domain-like |Exosome component 1, EXOSC1 |Human (Homo sapiens) [TaxId: 9606]
d1c9ub_ : (ARG117) (GLY162) [view usage] : b.68.2.1 |6-bladed beta-propeller |Soluble quinoprotein glucose dehydrogenase |Soluble quinoprotein glucose dehydrogenase |Soluble quinoprotein glucose dehydrogenase |Acinetobacter calcoaceticus [TaxId: 471]
d3k77a_ : (TYR30) (ALA76) [view usage] : b.18.1.8 |Galactose-binding domain-like |Galactose-binding domain-like |N-terminal domain of xrcc1 |N-terminal domain of xrcc1 |Human (Homo sapiens) [TaxId: 9606]
d4mzab_ : (ILE228) (LYS273) [view usage] : b.68.1.1 |6-bladed beta-propeller |Sialidases |Sialidases (neuraminidases) |automated matches |Human parainfluenza 3 virus [TaxId: 11217]
d1bwuq_ : (VAL64) (SER100) [view usage] : b.78.1.1 |beta-Prism II |alpha-D-mannose-specific plant lectins |alpha-D-mannose-specific plant lectins |Lectin (agglutinin) |Garlic (Allium sativum) [TaxId: 4682]
d1bu6x2 : (GLY259) (ILE290) [view usage] : c.55.1.4 |Ribonuclease H-like motif |Actin-like ATPase domain |Glycerol kinase |Glycerol kinase |Escherichia coli [TaxId: 562]
d1clha_ : (THR44) (THR93) [view usage] : b.62.1.1 |Cyclophilin-like |Cyclophilin-like |Cyclophilin (peptidylprolyl isomerase) |Peptidyl-prolyl cis-trans isomerase A, PpiA |Escherichia coli [TaxId: 562]
d1iw7a2 : (ALA130) (SER172) [view usage] : d.181.1.1 |Insert subdomain of RNA polymerase alpha subunit |Insert subdomain of RNA polymerase alpha subunit |Insert subdomain of RNA polymerase alpha subunit |RNA polymerase alpha subunit |Thermus thermophilus [TaxId: 274]
d1xo7a_ : (HIS56) (ALA104) [view usage] : b.62.1.1 |Cyclophilin-like |Cyclophilin-like |Cyclophilin (peptidylprolyl isomerase) |Cyclophilin (eukaryotic) |Trypanosoma cruzi [TaxId: 5693]
d1xaka_ : (CYS-1) (ALA35) [view usage] : b.1.24.1 |Immunoglobulin-like beta-sandwich |Accessory protein X4 (ORF8, ORF7a) |Accessory protein X4 (ORF8, ORF7a) |Accessory protein X4 (ORF8, ORF7a) |SARS coronavirus [TaxId: 227859]
d2wo1b_ : (GLU152) (THR204) [view usage] : b.18.1.4 |Galactose-binding domain-like |Galactose-binding domain-like |Ephrin receptor ligand binding domain |automated matches |Human (Homo sapiens) [TaxId: 9606]
d4gmxb_ : (GLY109) (ALA159) [view usage] : b.55.1.0 |PH domain-like barrel |PH domain-like |automated matches |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1nrka1 : (LEU280) (PRO319) [view usage] : b.44.2.1 |Elongation factor/aminomethyltransferase common domain |Aminomethyltransferase beta-barrel domain |Aminomethyltransferase beta-barrel domain |Hypothetical protein YgfZ, C-terminal domain |Escherichia coli [TaxId: 562]
d1hqma_ : (ILE128) (PHE170) [view usage] : i.8.1.1 |RNA polymerase |RNA polymerase |RNA polymerase |DNA-directed RNA polymerase alpha(2), beta, beta-prime and omega subunits |Thermus aquaticus [TaxId: 271]
d2zb0a_ : (THR7) (ALA40) [view usage] : d.144.1.7 |Protein kinase-like (PK-like) |Protein kinase-like (PK-like) |Protein kinases, catalytic subunit |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1a9ua_ : (THR7) (ALA40) [view usage] : d.144.1.7 |Protein kinase-like (PK-like) |Protein kinase-like (PK-like) |Protein kinases, catalytic subunit |MAP kinase p38 |Human (Homo sapiens) [TaxId: 9606]
d1q2va2 : (GLY329) (GLU364) [view usage] : c.8.5.2 |The "swivelling" beta/beta/alpha domain |GroEL apical domain-like |Group II chaperonin (CCT, TRIC), apical domain |Thermosome, A-domain |Thermococcus sp. ks-1, alpha chain [TaxId: 79679]
d2ntmd_ : (ARG5) (VAL42) [view usage] : d.153.2.1 |Ntn hydrolase-like |Archaeal IMP cyclohydrolase PurO |Archaeal IMP cyclohydrolase PurO |Hypothetical protein MTH1020 |Methanothermobacter thermautotrophicus [TaxId: 145262]
d1pmhx_ : (LYS129) (ILE180) [view usage] : b.18.1.18 |Galactose-binding domain-like |Galactose-binding domain-like |Family 27 carbohydrate binding module, CBM27 |Beta-1,4-mannanase ManA |Caldicellulosiruptor saccharolyticus [TaxId: 44001]
d4mj0d_ : (THR218) (LYS296) [view usage] : b.121.6.0 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Group I dsDNA viruses |automated matches |automated matches |Bk polyomavirus [TaxId: 10629]
d2qqna_ : (PRO378) (GLY423) [view usage] : b.18.1.2 |Galactose-binding domain-like |Galactose-binding domain-like |Discoidin domain (FA58C, coagulation factor 5/8 C-terminal domain) |C2 domain of factor VIII |Human (Homo sapiens) [TaxId: 9606]
d4poqh_ : (THR222) (LYS300) [view usage] : b.121.6.1 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Group I dsDNA viruses |Papovaviridae-like VP |automated matches |Human polyomavirus 9 [TaxId: 943908]
d3b7ma_ : (LEU119) (ASP148) [view usage] : b.29.1.11 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Xylanase/endoglucanase 11/12 |automated matches |Rhodothermus marinus [TaxId: 29549]
d2ocka_ : (SER21) (GLY56) [view usage] : c.69.1.0 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2ocga_ : (SER21) (GLY56) [view usage] : c.69.1.0 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2ocla_ : (SER21) (GLY56) [view usage] : c.69.1.0 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2b4cg1 : (GLY250) (LEU288) [view usage] : d.172.1.1 |gp120 core |gp120 core |gp120 core |gp120 core |Human immunodeficiency virus type 1 [TaxId: 11676]
d1pmjx_ : (LYS128) (ARG181) [view usage] : b.18.1.18 |Galactose-binding domain-like |Galactose-binding domain-like |Family 27 carbohydrate binding module, CBM27 |Beta-1,4-mannanase ManA |Caldicellulosiruptor saccharolyticus [TaxId: 44001]
d1wfia_ : (TYR10) (GLY48) [view usage] : b.15.1.4 |HSP20-like chaperones |HSP20-like chaperones |Nuclear movement domain |Nuclear migration protein nudC |Mouse (Mus musculus) [TaxId: 10090]
d4mj1d_ : (THR218) (LYS292) [view usage] : b.121.6.0 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Group I dsDNA viruses |automated matches |automated matches |Bk polyomavirus [TaxId: 10629]
d2qqma2 : (PHE381) (GLY423) [view usage] : b.18.1.2 |Galactose-binding domain-like |Galactose-binding domain-like |Discoidin domain (FA58C, coagulation factor 5/8 C-terminal domain) |C2 domain of factor VIII |Human (Homo sapiens) [TaxId: 9606]
d2ntka_ : (ARG5) (VAL42) [view usage] : d.153.2.1 |Ntn hydrolase-like |Archaeal IMP cyclohydrolase PurO |Archaeal IMP cyclohydrolase PurO |Hypothetical protein MTH1020 |Methanothermobacter thermautotrophicus [TaxId: 145262]
d4e0fa1 : (ILE9) (GLY57) [view usage] : b.43.4.0 |Reductase/isomerase/elongation factor common domain |Riboflavin synthase domain-like |automated matches |automated matches |Brucella abortus [TaxId: 235]
d2amua_ : (ALA90) (GLU131) [view usage] : b.1.13.0 |Immunoglobulin-like beta-sandwich |Superoxide reductase-like |automated matches |automated matches |Thermotoga maritima [TaxId: 2336]
d1jm1a_ : (GLN122) (CYS172) [view usage] : b.33.1.1 |ISP domain |ISP domain |Rieske iron-sulfur protein (ISP) |Rieske protein II (SoxF) |Sulfolobus acidocaldarius [TaxId: 2285]
d3hd2a_ : (GLY81) (PRO114) [view usage] : d.58.30.1 |Ferredoxin-like |6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK |6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK |6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK |Escherichia coli K-12 [TaxId: 83333]
d1gp0a_ : (LEU1588) (HIS1641) [view usage] : b.64.1.1 |Mannose 6-phosphate receptor domain |Mannose 6-phosphate receptor domain |Mannose 6-phosphate receptor domain |Cation-independent mannose-6-phosphate receptor (MIR-receptor) |Human (Homo sapiens) [TaxId: 9606]
d1rrha2 : (GLY84) (VAL128) [view usage] : b.12.1.1 |Lipase/lipooxygenase domain (PLAT/LH2 domain) |Lipase/lipooxygenase domain (PLAT/LH2 domain) |Lipoxigenase N-terminal domain |Plant lipoxigenase |Soybean (Glycine max), isozyme L3 [TaxId: 3847]
d2gp3b_ : (THR173) (SER210) [view usage] : b.82.2.14 |Double-stranded beta-helix |Clavaminate synthase-like |Histone demethylase core |JMJD2A core |Human (Homo sapiens) [TaxId: 9606]
d4mj0a_ : (THR218) (LYS296) [view usage] : b.121.6.0 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Group I dsDNA viruses |automated matches |automated matches |Bk polyomavirus [TaxId: 10629]
d1wioa2 : (LYS246) (VAL291) [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |CD4 V-set domains |Human (Homo sapiens) [TaxId: 9606]
d3bn6a_ : (SER112) (GLY157) [view usage] : b.18.1.0 |Galactose-binding domain-like |Galactose-binding domain-like |automated matches |automated matches |Cow (Bos taurus) [TaxId: 9913]
d1wm1a_ : (GLY17) (PRO53) [view usage] : c.69.1.7 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Proline iminopeptidase-like |Proline aminopeptidase |Serratia marcescens [TaxId: 615]
d3dxta_ : (TYR179) (VAL214) [view usage] : b.82.2.14 |Double-stranded beta-helix |Clavaminate synthase-like |Histone demethylase core |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1flga_ : (GLN359) (PRO406) [view usage] : b.70.1.1 |8-bladed beta-propeller |Quinoprotein alcohol dehydrogenase-like |Quinoprotein alcohol dehydrogenase-like |Ethanol dehydrogenase |Pseudomonas aeruginosa [TaxId: 287]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
b.68, b.70, b.82, c.69, d.58, b.29, d.144, c.55, d.153, b.18, b.121, b.1, c.8, b.62, b.84, b.55, b.43, i.8, b.15, b.33,
b.44, b.12, b.64, b.78, d.181, d.172