Tableau information
Concept source: d3k38a_ amino acid (a.a.) range (LYS272)(ASN306)
nSSEs in this Concept: 4
String of secondary struct.elems. (SSEs) defining this concept: EEEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(LYS272) (GLU276) E1
(GLU276) (PHE281) E2
(LYS285) (SER295) E3
(ARG300) (ASN306) E4
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 -78.0° E2
E3 105.0° 165.9° E3
E4 -86.6° -39.5° 152.9°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±12.4° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d4giia_ : (THR890) (LYS933) [view usage] : d.144.1.0 |Protein kinase-like (PK-like) |Protein kinase-like (PK-like) |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1euja_ : (LEU9) (VAL44) [view usage] : b.40.4.4 |OB-fold |Nucleic acid-binding proteins |Myf domain |EMAP II |Human (Homo sapiens) [TaxId: 9606]
d2akla1 : (THR80) (LYS107) [view usage] : b.34.11.2 |SH3-like barrel |Prokaryotic SH3-related domain |PhnA-like |Hypothetical protein PA0128, C-terminal domain |Pseudomonas aeruginosa [TaxId: 287]
d4jw0a_ : (GLN2) (VAL42) [view usage] : b.40.15.1 |OB-fold |EutN/CcmL-like |EutN/CcmL-like |automated matches |Gloeobacter violaceus [TaxId: 251221]
d2gfqb_ : (PHE24) (ASN50) [view usage] : c.56.7.1 |Phosphorylase/hydrolase-like |AF0625-like |AF0625-like |Hypothetical protein PH0006 |Pyrococcus horikoshii [TaxId: 53953]
d1fl0a_ : (LEU155) (VAL190) [view usage] : b.40.4.4 |OB-fold |Nucleic acid-binding proteins |Myf domain |EMAP II |Human (Homo sapiens) [TaxId: 9606]
d2icga1 : (GLU95) (LEU128) [view usage] : d.369.1.1 |SMI1/KNR4-like |SMI1/KNR4-like |SMI1/KNR4-like |Uncharacterized protein Lin2918 |Listeria innocua [TaxId: 1642]
d1ntga_ : (LEU10) (VAL45) [view usage] : b.40.4.4 |OB-fold |Nucleic acid-binding proteins |Myf domain |C-terminal domain of metazoan tyrosyl-tRNA synthetase, TyrRS |Human (Homo sapiens) [TaxId: 9606]
d1sroa_ : (ARG7) (HIS34) [view usage] : b.40.4.5 |OB-fold |Nucleic acid-binding proteins |Cold shock DNA-binding domain-like |S1 RNA-binding domain of polyribonucleotide phosphorylase, PNPase |Escherichia coli [TaxId: 562]
d2fwua1 : (THR545) (ILE591) [view usage] : b.1.27.1 |Immunoglobulin-like beta-sandwich |CalX-like |CalX-beta domain |Sodium/calcium exchanger 1 |Dog (Canis familiaris) [TaxId: 9615]
d1gxea_ : (ARG1) (ILE47) [view usage] : b.1.1.4 |Immunoglobulin-like beta-sandwich |Immunoglobulin |I set domains |Cardiac myosin binding protein C, different domains |Human (Homo sapiens) [TaxId: 9606]
d1oxsc1 : (GLY297) (TYR327) [view usage] : b.40.6.3 |OB-fold |MOP-like |ABC-transporter additional domain |Glucose transport protein GlcV, N-terminal domain |Sulfolobus solfataricus [TaxId: 2287]
d3ut1a3 : (VAL494) (ASP521) [view usage] : b.34.9.0 |SH3-like barrel |Tudor/PWWP/MBT |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2id0a1 : (THR562) (ALA591) [view usage] : b.40.4.5 |OB-fold |Nucleic acid-binding proteins |Cold shock DNA-binding domain-like |Exoribonuclease 2, RNB |Escherichia coli [TaxId: 562]
d1x9na2 : (GLY754) (THR798) [view usage] : b.40.4.6 |OB-fold |Nucleic acid-binding proteins |DNA ligase/mRNA capping enzyme postcatalytic domain |DNA ligase I (LIG1) |Human (Homo sapiens) [TaxId: 9606]
d1a1xa_ : (ASP6) (THR38) [view usage] : b.63.1.1 |Oncogene products |Oncogene products |Oncogene products |p13-MTCP1 |Human (Homo sapiens) [TaxId: 9606]
d4giha_ : (THR890) (LYS933) [view usage] : d.144.1.0 |Protein kinase-like (PK-like) |Protein kinase-like (PK-like) |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d4jbma2 : (GLY114) (LEU144) [view usage] : b.40.16.0 |OB-fold |HIN-2000 domain-like |automated matches |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d2k3ha_ : (ARG465) (ILE510) [view usage] : b.7.1.0 |C2 domain-like |C2 domain (Calcium/lipid-binding domain, CaLB) |automated matches |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d2x9bb_ : (GLY15) (LEU38) [view usage] : b.37.1.0 |N-terminal domains of the minor coat protein g3p |N-terminal domains of the minor coat protein g3p |automated matches |automated matches |Enterobacteria phage [TaxId: 10868]
d2hd3b_ : (LEU3) (VAL42) [view usage] : b.40.15.1 |OB-fold |EutN/CcmL-like |EutN/CcmL-like |Ethanolamine utilization protein EutN |Escherichia coli [TaxId: 562]
d3rn2a2 : (GLY266) (LEU294) [view usage] : b.40.16.0 |OB-fold |HIN-2000 domain-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1keha_ : (GLY244) (ALA301) [view usage] : d.153.1.2 |Ntn hydrolase-like |N-terminal nucleophile aminohydrolases (Ntn hydrolases) |Penicillin acylase, catalytic domain |Cephalosporin acylase |Brevundimonas diminuta [TaxId: 293]
d4esra_ : (ILE1077) (PRO1102) [view usage] : b.34.2.0 |SH3-like barrel |SH3-domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3rn2b2 : (GLY266) (LEU294) [view usage] : b.40.16.0 |OB-fold |HIN-2000 domain-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1bkba2 : (ILE75) (PRO105) [view usage] : b.40.4.5 |OB-fold |Nucleic acid-binding proteins |Cold shock DNA-binding domain-like |C-terminal domain of eukaryotic initiation translation factor 5a (eIF5a) |Pyrobaculum aerophilum [TaxId: 13773]
d2edwa_ : (GLY7) (GLY43) [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2x9ba_ : (GLY15) (LEU38) [view usage] : b.37.1.0 |N-terminal domains of the minor coat protein g3p |N-terminal domains of the minor coat protein g3p |automated matches |automated matches |Enterobacteria phage [TaxId: 10868]
d3soca_ : (MET0) (PRO222) [view usage] : d.144.1.0 |Protein kinase-like (PK-like) |Protein kinase-like (PK-like) |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1ssfa2 : (SER77) (TYR104) [view usage] : b.34.9.1 |SH3-like barrel |Tudor/PWWP/MBT |Tudor domain |p53-binding protein 1, 53BP1 |Human (Homo sapiens) [TaxId: 9606]
d3s8rb_ : (GLY244) (ARG300) [view usage] : d.153.1.2 |Ntn hydrolase-like |N-terminal nucleophile aminohydrolases (Ntn hydrolases) |Penicillin acylase, catalytic domain |Cephalosporin acylase |Pseudomonas sp., glutarylamidase [TaxId: 306]
d1e7za_ : (LEU155) (VAL190) [view usage] : b.40.4.4 |OB-fold |Nucleic acid-binding proteins |Myf domain |EMAP II |Human (Homo sapiens) [TaxId: 9606]
d2jr7a_ : (HIS5) (THR35) [view usage] : g.41.17.1 |Rubredoxin-like |CSL zinc finger |CSL zinc finger |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1daba_ : (GLN468) (LEU506) [view usage] : b.80.1.7 |Single-stranded right-handed beta-helix |Pectin lyase-like |Virulence factor P.69 pertactin |Virulence factor P.69 pertactin |Bordetella pertussis [TaxId: 520]
d1v06a_ : (GLY261) (CYS296) [view usage] : b.145.1.0 |AXH domain |AXH domain |automated matches |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d4e57a_ : (GLY240) (ARG296) [view usage] : d.153.1.2 |Ntn hydrolase-like |N-terminal nucleophile aminohydrolases (Ntn hydrolases) |Penicillin acylase, catalytic domain |automated matches |Pseudomonas sp. [TaxId: 81841]
d1sbfa_ : (THR3) (TRP60) [view usage] : b.29.1.1 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Legume lectins |Legume lectin |Soybean (Glycine max) [TaxId: 3847]
d2h3ja1 : (GLY35) (ARG62) [view usage] : b.34.1.2 |SH3-like barrel |C-terminal domain of transcriptional repressors |FeoA-like |Hypothetical protein PA4359 |Pseudomonas aeruginosa [TaxId: 287]
d3p0ca_ : (GLN15) (HIS48) [view usage] : d.189.1.0 |PX domain |PX domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1d7qa_ : (GLY45) (ILE74) [view usage] : b.40.4.5 |OB-fold |Nucleic acid-binding proteins |Cold shock DNA-binding domain-like |Translation initiation factor-1a, eIF1a |Human (Homo sapiens) [TaxId: 9606]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
b.68, b.80, b.29, c.56, d.144, b.40, d.153, b.1, b.145, b.34, b.7, b.37, g.41, d.369, d.189, b.63