Tableau information
Concept source: d2rgsa2 amino acid (a.a.) range (LYS361)(LYS413)
nSSEs in this Concept: 4
String of secondary struct.elems. (SSEs) defining this concept: EEEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(LYS361) (GLY371) E1
(ASP376) (THR382) E2
(ASN390) (THR394) E3
(SER403) (LYS413) E4
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 146.1° E2
E3 -39.5° 156.1° E3
E4 162.3° -21.8° 158.1°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±13.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1eo2a_ : (ARG48) (THR108) [view usage] : b.3.6.1 |Prealbumin-like |Aromatic compound dioxygenase |Aromatic compound dioxygenase |Protocatechuate-3,4-dioxygenase, alpha chain |Acinetobacter calcoaceticus, adp1 [TaxId: 471]
d2cnjd_ : (LEU1588) (TRP1640) [view usage] : b.64.1.1 |Mannose 6-phosphate receptor domain |Mannose 6-phosphate receptor domain |Mannose 6-phosphate receptor domain |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1olpa2 : (VAL259) (LEU311) [view usage] : b.12.1.3 |Lipase/lipooxygenase domain (PLAT/LH2 domain) |Lipase/lipooxygenase domain (PLAT/LH2 domain) |Alpha-toxin, C-terminal domain |Alpha-toxin, C-terminal domain |Clostridium absonum [TaxId: 29369]
d2wxua2 : (LYS256) (LYS310) [view usage] : b.12.1.0 |Lipase/lipooxygenase domain (PLAT/LH2 domain) |Lipase/lipooxygenase domain (PLAT/LH2 domain) |automated matches |automated matches |Clostridium perfringens [TaxId: 1502]
d3cjia_ : (GLU124) (VAL181) [view usage] : b.121.4.0 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Positive stranded ssRNA viruses |automated matches |automated matches |Seneca valley virus [TaxId: 390157]
d2diea2 : (THR400) (GLY443) [view usage] : b.71.1.0 |Glycosyl hydrolase domain |Glycosyl hydrolase domain |automated matches |automated matches |Bacillus sp.
d1qm6a2 : (LYS256) (LYS310) [view usage] : b.12.1.3 |Lipase/lipooxygenase domain (PLAT/LH2 domain) |Lipase/lipooxygenase domain (PLAT/LH2 domain) |Alpha-toxin, C-terminal domain |Alpha-toxin, C-terminal domain |Clostridium perfringens, different strains [TaxId: 1502]
d1ob1c2 : (ALA60) (HIS95) [view usage] : g.3.11.4 |Knottins (small inhibitors, toxins, lectins) |EGF/Laminin |Merozoite surface protein 1 (MSP-1) |Merozoite surface protein 1 (MSP-1) |Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
d2z71c_ : (TYR278) (ARG321) [view usage] : d.153.1.3 |Ntn hydrolase-like |N-terminal nucleophile aminohydrolases (Ntn hydrolases) |Penicillin V acylase |automated matches |Bacillus sphaericus [TaxId: 1421]
d1j7ga_ : (MET1) (LYS35) [view usage] : c.110.1.1 |DTD-like |DTD-like |DTD-like |D-Tyr tRNAtyr deacylase, DTD |Haemophilus influenzae [TaxId: 727]
d1tfpa_ : (LEU12) (GLU57) [view usage] : b.3.4.1 |Prealbumin-like |Transthyretin (synonym: prealbumin) |Transthyretin (synonym: prealbumin) |Transthyretin (synonym: prealbumin) |Chicken (Gallus gallus) [TaxId: 9031]
d2buxa1 : (ARG48) (THR108) [view usage] : b.3.6.1 |Prealbumin-like |Aromatic compound dioxygenase |Aromatic compound dioxygenase |Protocatechuate-3,4-dioxygenase, alpha chain |Acinetobacter calcoaceticus, adp1 [TaxId: 471]
d3og2a3 : (PRO631) (PRO665) [view usage] : b.149.1.0 |Beta-galactosidase LacA, domain 3 |Beta-galactosidase LacA, domain 3 |automated matches |automated matches |Trichoderma reesei [TaxId: 51453]
d3n44f1 : (PRO58) (VAL108) [view usage] : f.10.1.0 |Viral glycoprotein, central and dimerisation domains |Viral glycoprotein, central and dimerisation domains |automated matches |automated matches |Chikungunya virus [TaxId: 37124]
d1ojwb1 : (ASN12) (GLU60) [view usage] : g.18.1.1 |Complement control module/SCR domain |Complement control module/SCR domain |Complement control module/SCR domain |Complement decay-accelerating factor (Daf, CD55) |Human (Homo sapiens) [TaxId: 9606]
d1ueba3 : (VAL128) (ASP174) [view usage] : b.40.4.5 |OB-fold |Nucleic acid-binding proteins |Cold shock DNA-binding domain-like |Elongation factor P middle and C-terminal domains |Thermus thermophilus HB8 [TaxId: 300852]
d2z71a_ : (TYR278) (ARG321) [view usage] : d.153.1.3 |Ntn hydrolase-like |N-terminal nucleophile aminohydrolases (Ntn hydrolases) |Penicillin V acylase |automated matches |Bacillus sphaericus [TaxId: 1421]
d4niaa_ : (MET76) (PRO127) [view usage] : b.121.7.1 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Satellite viruses |Satellite viruses |STNV coat protein |Satellite tobacco necrosis virus [TaxId: 12881]
d1u05a_ : (ASP89) (TRP127) [view usage] : d.194.1.2 |CNF1/YfiH-like putative cysteine hydrolases |CNF1/YfiH-like putative cysteine hydrolases |YfiH-like |Hypothetical protein yfiH |Shigella flexneri [TaxId: 623]
d1h4hd_ : (TYR16) (ARG49) [view usage] : b.29.1.11 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Xylanase/endoglucanase 11/12 |Xylanase II |Bacillus agaradhaerens [TaxId: 76935]
d3zeza_ : (LYS100) (LYS123) [view usage] : b.85.4.0 |beta-clip |dUTPase-like |automated matches |automated matches |Staphylococcus phage [TaxId: 53369]
d1h4ga_ : (TYR16) (ARG49) [view usage] : b.29.1.11 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Xylanase/endoglucanase 11/12 |Xylanase II |Bacillus agaradhaerens [TaxId: 76935]
d1rlbe_ : (GLY59) (ASP108) [view usage] : b.60.1.1 |Lipocalins |Lipocalins |Retinol binding protein-like |Retinol binding protein |Chicken (Gallus gallus) [TaxId: 9031]
d1j0ma2 : (GLU739) (GLY777) [view usage] : b.24.1.1 |Hyaluronate lyase-like, C-terminal domain |Hyaluronate lyase-like, C-terminal domain |Hyaluronate lyase-like, C-terminal domain |Xanthan lyase |Bacillus sp. GL1 [TaxId: 84635]
d2y6tg_ : (GLY45) (LYS102) [view usage] : b.16.1.1 |Ecotin, trypsin inhibitor |Ecotin, trypsin inhibitor |Ecotin, trypsin inhibitor |automated matches |Yersinia pseudotuberculosis [TaxId: 502800]
d1hehc_ : (GLN599) (GLY632) [view usage] : b.2.2.1 |Common fold of diphtheria toxin/transcription factors/cytochrome f |Carbohydrate-binding domain |Cellulose-binding domain family II |Endo-1,4-beta xylanase D, xylan binding domain, XBD |Cellulomonas fimi [TaxId: 1708]
d2a5za1 : (ASN67) (ALA105) [view usage] : b.29.1.24 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |SO2946-like |Hypothetical protein SO2946 |Shewanella oneidensis [TaxId: 70863]
d1j0ha2 : (GLY552) (TRP588) [view usage] : b.71.1.1 |Glycosyl hydrolase domain |Glycosyl hydrolase domain |alpha-Amylases, C-terminal beta-sheet domain |Neopullulanase |Bacillus stearothermophilus [TaxId: 1422]
d2mev1_ : (GLU128) (VAL187) [view usage] : b.121.4.1 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Positive stranded ssRNA viruses |Picornaviridae-like VP (VP1, VP2, VP3 and VP4) |Mengo encephalomyocarditis virus coat proteins |Mengovirus [TaxId: 12107]
d1ania_ : (HIS372) (TYR402) [view usage] : c.76.1.1 |Alkaline phosphatase-like |Alkaline phosphatase-like |Alkaline phosphatase |Alkaline phosphatase |Escherichia coli [TaxId: 562]
d1akla1 : (GLN429) (GLN465) [view usage] : b.80.7.1 |Single-stranded right-handed beta-helix |beta-Roll |Serralysin-like metalloprotease, C-terminal domain |Metalloprotease |Pseudomonas aeruginosa [TaxId: 287]
d2a5zc_ : (ASN67) (ALA105) [view usage] : b.29.1.24 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |SO2946-like |Hypothetical protein SO2946 |Shewanella oneidensis [TaxId: 70863]
d1h4ha_ : (TYR16) (ARG49) [view usage] : b.29.1.11 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Xylanase/endoglucanase 11/12 |Xylanase II |Bacillus agaradhaerens [TaxId: 76935]
d1vmoa_ : (VAL85) (LYS131) [view usage] : b.77.1.1 |beta-Prism I |Vitelline membrane outer protein-I (VMO-I) |Vitelline membrane outer protein-I (VMO-I) |Vitelline membrane outer protein-I (VMO-I) |Chicken (Gallus gallus) [TaxId: 9031]
d1h4hb_ : (TYR16) (ARG49) [view usage] : b.29.1.11 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Xylanase/endoglucanase 11/12 |Xylanase II |Bacillus agaradhaerens [TaxId: 76935]
d4jkma1 : (ARG82) (GLU116) [view usage] : b.18.1.0 |Galactose-binding domain-like |Galactose-binding domain-like |automated matches |automated matches |Clostridium perfringens [TaxId: 195102]
d1g9ka1 : (ASP422) (THR458) [view usage] : b.80.7.1 |Single-stranded right-handed beta-helix |beta-Roll |Serralysin-like metalloprotease, C-terminal domain |Metalloprotease |Pseudomonas sp., tac ii 18 [TaxId: 306]
d1eo9a_ : (ARG48) (THR108) [view usage] : b.3.6.1 |Prealbumin-like |Aromatic compound dioxygenase |Aromatic compound dioxygenase |Protocatechuate-3,4-dioxygenase, alpha chain |Acinetobacter calcoaceticus, adp1 [TaxId: 471]
d2j44a1 : (GLY116) (PRO167) [view usage] : b.3.1.3 |Prealbumin-like |Starch-binding domain-like |PUD-like |Pullulanase PulA |Pneumococcus (Streptococcus pneumoniae) [TaxId: 1313]
d1feua_ : (ARG122) (PRO176) [view usage] : b.53.1.1 |Ribosomal protein L25-like |Ribosomal protein L25-like |Ribosomal protein L25-like |Ribosomal protein TL5 (general stress protein CTC) |Thermus thermophilus [TaxId: 274]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
b.80, c.76, b.29, b.40, d.153, b.60, b.18, d.194, b.121, b.2, b.85, b.1, b.77, c.110, b.3, b.71, g.18, b.24, b.16, b.12,
g.3, b.64, b.149, f.10, b.53