Tableau information
Concept source: d2d37a_ amino acid (a.a.) range (CYS100)(GLY128)
nSSEs in this Concept: 4
String of secondary struct.elems. (SSEs) defining this concept: EEEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(CYS100) (ASP105) E1
(TYR107) (LYS113) E2
(TYR115) (GLY121) E3
(ASP122) (GLY128) E4
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 173.5° E2
E3 82.7° -93.2° E3
E4 -87.2° 95.8° 164.7°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±13.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d2og4a_ : (TYR2208) (SER2239) [view usage] : c.97.3.0 |Cytidine deaminase-like |JAB1/MPN domain |automated matches |automated matches |Saccharomyces cerevisiae [TaxId: 285006]
d1ynya2 : (GLY53) (PHE74) [view usage] : c.1.9.6 |TIM beta/alpha-barrel |Metallo-dependent hydrolases |Hydantoinase (dihydropyrimidinase), catalytic domain |D-hydantoinase |Bacillus sp. AR9 [TaxId: 301298]
d3ou1b_ : (VAL11) (GLN61) [view usage] : b.50.1.1 |Acid proteases |Acid proteases |Retroviral protease (retropepsin) |Human immunodeficiency virus type 1 protease |Human immunodeficiency virus type 1 [TaxId: 11676]
d1ltea_ : (SER75) (VAL126) [view usage] : b.29.1.1 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Legume lectins |Legume lectin |Coral tree (Erythrina corallodendron) [TaxId: 3843]
d3heib_ : (ARG110) (VAL147) [view usage] : b.6.1.0 |Cupredoxin-like |Cupredoxins |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2vmja1 : (LEU6) (GLN54) [view usage] : b.6.1.3 |Cupredoxin-like |Cupredoxins |Multidomain cupredoxins |automated matches |Alcaligenes xylosoxydans [TaxId: 85698]
d1dgla_ : (ALA123) (LEU156) [view usage] : b.29.1.1 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Legume lectins |Legume lectin |Mucana (Dioclea grandiflora) [TaxId: 3837]
d2hmga_ : (THR10) (THR37) [view usage] : b.19.1.2 |Viral protein domain |Viral protein domain |Influenza hemagglutinin headpiece |Hemagglutinin |Influenza A virus, different strains [TaxId: 11320]
d1q5xb_ : (VAL129) (SER154) [view usage] : c.8.7.1 |The "swivelling" beta/beta/alpha domain |RraA-like |RraA-like |Regulator of RNase E activity RraA (MenG) |Escherichia coli [TaxId: 562]
d3zvfa_ : (GLU45) (LYS76) [view usage] : b.47.1.4 |Trypsin-like serine proteases |Trypsin-like serine proteases |Viral cysteine protease of trypsin fold |automated matches |Human enterovirus [TaxId: 42789]
d1abqa_ : (TYR70) (LYS105) [view usage] : b.34.2.1 |SH3-like barrel |SH3-domain |SH3-domain |Abl tyrosine kinase, SH3 domain |Mouse (Mus musculus) [TaxId: 10090]
d3nfwa_ : (SER107) (GLY135) [view usage] : b.45.1.0 |Split barrel-like |FMN-binding split barrel |automated matches |automated matches |Mycobacterium thermoresistibile [TaxId: 1078020]
d1cf1c1 : (GLY43) (ARG81) [view usage] : b.1.18.11 |Immunoglobulin-like beta-sandwich |E set domains |Arrestin/Vps26-like |Arrestin |Cow (Bos taurus), visual arrestin [TaxId: 9913]
d4l82b_ : (CYS107) (GLY135) [view usage] : b.45.1.0 |Split barrel-like |FMN-binding split barrel |automated matches |automated matches |Rickettsia felis [TaxId: 315456]
d3b8lf_ : (ILE95) (PHE132) [view usage] : d.17.4.28 |Cystatin-like |NTF2-like |BaiE/LinA-like |Uncharacterized protein Saro3538 |Novosphingobium aromaticivorans [TaxId: 48935]
d3fsda_ : (LEU65) (VAL89) [view usage] : d.17.4.0 |Cystatin-like |NTF2-like |automated matches |automated matches |Rhodospirillum rubrum [TaxId: 269796]
d2gbwb_ : (LEU123) (PHE154) [view usage] : d.17.4.0 |Cystatin-like |NTF2-like |automated matches |automated matches |Sphingobium yanoikuyae [TaxId: 13690]
d1gu3a_ : (ALA110) (ASP147) [view usage] : b.18.1.14 |Galactose-binding domain-like |Galactose-binding domain-like |CBM4/9 |Cellulose-binding domain of cellulase C |Cellulomonas fimi [TaxId: 1708]
d2oj5a1 : (SER339) (ASN369) [view usage] : b.21.1.2 |Virus attachment protein globular domain |Virus attachment protein globular domain |Reovirus attachment protein sigma 1 head domain |automated matches |Reovirus sp. [TaxId: 10891]
d2avfb1 : (PRO13) (HIS60) [view usage] : b.6.1.0 |Cupredoxin-like |Cupredoxins |automated matches |automated matches |Achromobacter cycloclastes [TaxId: 223]
d3d5ua_ : (ASP28) (GLU55) [view usage] : d.144.1.0 |Protein kinase-like (PK-like) |Protein kinase-like (PK-like) |automated matches |automated matches |Zebrafish (Danio rerio) [TaxId: 7955]
d1zsqa1 : (GLU74) (GLY103) [view usage] : b.55.1.8 |PH domain-like barrel |PH domain-like |GRAM domain |Myotubularin-related protein 2, N-terminal domain |Human (Homo sapiens) [TaxId: 9606]
d3whua_ : (PRO42) (SER77) [view usage] : b.29.1.13 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Lectin leg-like |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2moua_ : (ILE97) (SER131) [view usage] : d.129.3.0 |TBP-like |Bet v1-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1i78a_ : (GLY182) (ASP227) [view usage] : f.4.4.1 |Transmembrane beta-barrels |OMPT-like |Outer membrane protease OMPT |Outer membrane protease OMPT |Escherichia coli [TaxId: 562]
d1auna_ : (PRO39) (THR64) [view usage] : b.25.1.1 |Osmotin, thaumatin-like protein |Osmotin, thaumatin-like protein |Osmotin, thaumatin-like protein |Pathogenesis-related protein 5d |Tobacco (Nicotiana tabacum) [TaxId: 4097]
d4k1ya_ : (THR120) (THR157) [view usage] : b.29.1.1 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Legume lectins |automated matches |Canavalia boliviana [TaxId: 232300]
d1bmv21 : (MET3071) (ILE3104) [view usage] : b.121.4.2 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Positive stranded ssRNA viruses |Comoviridae-like VP |Comovirus coat proteins (VP37 and VP23) |BPMV (Bean pod mottle virus) [TaxId: 12260]
d3ekpa_ : (VAL11) (GLN61) [view usage] : b.50.1.1 |Acid proteases |Acid proteases |Retroviral protease (retropepsin) |Human immunodeficiency virus type 1 protease |Hiv-1 m:b_arv2/sf2 [TaxId: 11685]
d1dyka2 : (THR3052) (GLY3082) [view usage] : b.29.1.4 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Laminin G-like module |Laminin alpha2 chain |Mouse (Mus musculus) [TaxId: 10090]
d3oqaa_ : (LYS20) (GLN61) [view usage] : b.50.1.1 |Acid proteases |Acid proteases |Retroviral protease (retropepsin) |Human immunodeficiency virus type 1 protease |Human immunodeficiency virus type 1 [TaxId: 11676]
d2d37a_ : (CYS100) (GLY128) [view usage] : b.45.1.0 |Split barrel-like |FMN-binding split barrel |automated matches |automated matches |Sulfolobus tokodaii [TaxId: 273063]
d3mjfa3 : (ARG329) (GLY381) [view usage] : b.84.2.0 |Barrel-sandwich hybrid |Rudiment single hybrid motif |automated matches |automated matches |Yersinia pestis [TaxId: 214092]
d2avfa1 : (LEU12) (HIS60) [view usage] : b.6.1.0 |Cupredoxin-like |Cupredoxins |automated matches |automated matches |Achromobacter cycloclastes [TaxId: 223]
d4ge1d_ : (ALA90) (ASP126) [view usage] : b.60.1.0 |Lipocalins |Lipocalins |automated matches |automated matches |Rhodnius prolixus [TaxId: 13249]
d1yrza1 : (GLU1390) (HIS1415) [view usage] : b.29.1.23 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Beta-D-xylosidase C-terminal domain-like |Beta-D-xylosidase C-terminal domain |Bacillus halodurans [TaxId: 86665]
d4b6la_ : (LEU52) (GLU78) [view usage] : d.144.1.0 |Protein kinase-like (PK-like) |Protein kinase-like (PK-like) |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2d38a_ : (CYS100) (GLY128) [view usage] : b.45.1.0 |Split barrel-like |FMN-binding split barrel |automated matches |automated matches |Sulfolobus tokodaii [TaxId: 273063]
d1cf1a1 : (GLY43) (ARG81) [view usage] : b.1.18.11 |Immunoglobulin-like beta-sandwich |E set domains |Arrestin/Vps26-like |Arrestin |Cow (Bos taurus), visual arrestin [TaxId: 9913]
d4bcta_ : (ALA61) (THR86) [view usage] : b.25.1.1 |Osmotin, thaumatin-like protein |Osmotin, thaumatin-like protein |Osmotin, thaumatin-like protein |automated matches |Actinidia deliciosa [TaxId: 3627]
d1rj7e_ : (SER258) (VAL297) [view usage] : b.22.1.1 |TNF-like |TNF-like |TNF-like |Ectodysplasin A, Eda-a1 |Human (Homo sapiens) [TaxId: 9606]
d2bjra2 : (PRO186) (ASN246) [view usage] : b.169.1.1 |MFPT repeat-like |MFPT repeat-like |MFPT repeat |Sperm motility protein MFP2 |Pig roundworm (Ascaris suum), isoform B [TaxId: 6253]
d2om5a2 : (ASP111) (ASN141) [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.1, b.19, b.29, b.47, b.50, d.129, f.4, d.144, b.60, b.18, b.121, b.6, b.1, b.45, c.97, c.8, d.17, b.84, b.21, b.55,
b.22, b.25, b.34, b.169