Tableau information
Concept source: d4q0ka_ amino acid (a.a.) range (ASP40)(GLU77)
nSSEs in this Concept: 4
String of secondary struct.elems. (SSEs) defining this concept: EEEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(ASP40) (GLU45) E1
(THR52) (PHE58) E2
(ASN66) (VAL71) E3
(THR73) (GLU77) E4
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 161.7° E2
E3 -29.5° 167.7° E3
E4 -94.2° 103.5° -68.1°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±13.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d3wp4a_ : (ASN38) (ASP67) [view usage] : b.29.1.0 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |automated matches |automated matches |Neocallimastix patriciarum [TaxId: 4758]
d1tvoa_ : (PRO11) (ALA35) [view usage] : d.144.1.7 |Protein kinase-like (PK-like) |Protein kinase-like (PK-like) |Protein kinases, catalytic subunit |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2cuia1 : (ARG9) (THR50) [view usage] : b.1.2.1 |Immunoglobulin-like beta-sandwich |Fibronectin type III |Fibronectin type III |Tenascin-X |Human (Homo sapiens) [TaxId: 9606]
d2c1fa_ : (GLY30) (GLY64) [view usage] : b.29.1.0 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |automated matches |automated matches |Neocallimastix patriciarum [TaxId: 4758]
d2mc9a_ : (ASP63) (GLY117) [view usage] : b.62.1.1 |Cyclophilin-like |Cyclophilin-like |Cyclophilin (peptidylprolyl isomerase) |automated matches |Catharanthus roseus [TaxId: 4058]
d2xsxb1 : (GLN4) (THR41) [view usage] : d.54.1.0 |Enolase N-terminal domain-like |Enolase N-terminal domain-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3gaqa_ : (GLU82) (ASP117) [view usage] : b.60.1.1 |Lipocalins |Lipocalins |Retinol binding protein-like |automated matches |Brown ear tick (Rhipicephalus appendiculatus) [TaxId: 34631]
d3k0ta_ : (LYS3) (GLY46) [view usage] : d.79.1.0 |Bacillus chorismate mutase-like |YjgF-like |automated matches |automated matches |Pseudomonas syringae [TaxId: 323]
d1pm1x_ : (LYS63) (ASP113) [view usage] : b.60.1.1 |Lipocalins |Lipocalins |Retinol binding protein-like |Nitrophorin 2 (prolixin-s) |Rhodnius prolixus [TaxId: 13249]
d3cmbb_ : (ALA126) (GLY162) [view usage] : d.347.1.1 |Acetoacetate decarboxylase-like |Acetoacetate decarboxylase-like |Acetoacetate decarboxylase-like |Acetoacetate decarboxylase |Methanoculleus marisnigri [TaxId: 2198]
d2q9ua1 : (ILE146) (HIS176) [view usage] : d.157.1.3 |Metallo-hydrolase/oxidoreductase |Metallo-hydrolase/oxidoreductase |ROO N-terminal domain-like |Nitric oxide reductase N-terminal domain |Giardia intestinalis [TaxId: 5741]
d2vg9a_ : (GLY30) (GLY62) [view usage] : b.29.1.0 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |automated matches |automated matches |Neocallimastix patriciarum [TaxId: 4758]
d1e9ia2 : (SER1) (THR42) [view usage] : d.54.1.1 |Enolase N-terminal domain-like |Enolase N-terminal domain-like |Enolase N-terminal domain-like |Enolase |Escherichia coli [TaxId: 562]
d3n0xa_ : (GLY330) (PRO371) [view usage] : c.93.1.0 |Periplasmic binding protein-like I |Periplasmic binding protein-like I |automated matches |automated matches |Rhodopseudomonas palustris [TaxId: 1076]
d1d6ua3 : (ASN263) (ASP294) [view usage] : d.17.2.1 |Cystatin-like |Amine oxidase N-terminal region |Amine oxidase N-terminal region |Copper amine oxidase, domains 1 and 2 |Escherichia coli [TaxId: 562]
d3zlga1 : (VAL7) (SER42) [view usage] : d.54.1.0 |Enolase N-terminal domain-like |Enolase N-terminal domain-like |automated matches |automated matches |Streptococcus pyogenes [TaxId: 286636]
d4ayna_ : (GLY285) (HIS325) [view usage] : f.4.1.0 |Transmembrane beta-barrels |OMPA-like |automated matches |automated matches |Neisseria meningitidis [TaxId: 487]
d1zi7b_ : (LEU264) (LEU300) [view usage] : d.338.1.1 |Oxysterol-binding protein-like |Oxysterol-binding protein-like |Oxysterol-binding protein |Oxysterol-binding protein homolog 4, KES1 |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1sxxa_ : (GLN65) (ASP114) [view usage] : b.60.1.1 |Lipocalins |Lipocalins |Retinol binding protein-like |Nitrophorin 4 |Rhodnius prolixus [TaxId: 13249]
d4qtea_ : (PRO11) (ALA35) [view usage] : d.144.1.7 |Protein kinase-like (PK-like) |Protein kinase-like (PK-like) |Protein kinases, catalytic subunit |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3ni8a_ : (SER51) (LYS79) [view usage] : d.129.3.0 |TBP-like |Bet v1-like |automated matches |automated matches |Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
d2cxha1 : (ASP65) (LEU104) [view usage] : c.51.1.2 |Anticodon-binding domain-like |Class II aaRS ABD-related |Brix domain |Probable ribosomal biogenesis protein |Aeropyrum pernix [TaxId: 56636]
d1mbmb_ : (ASP128) (THR159) [view usage] : b.47.1.3 |Trypsin-like serine proteases |Trypsin-like serine proteases |Viral proteases |NSP4 proteinase |Equine arteritis virus, EAV [TaxId: 11047]
d2nn5a1 : (GLU43) (GLU73) [view usage] : d.129.3.5 |TBP-like |Bet v1-like |AHSA1 domain |Hypothetical protein EF2215 |Enterococcus faecalis [TaxId: 1351]
d2l2fa_ : (THR63) (CYS101) [view usage] : b.89.1.0 |Cyanovirin-N |Cyanovirin-N |automated matches |automated matches |Fusarium graminearum (Gibberella zeae) [TaxId: 5518]
d2iwma_ : (TYR55) (THR88) [view usage] : d.153.1.3 |Ntn hydrolase-like |N-terminal nucleophile aminohydrolases (Ntn hydrolases) |Penicillin V acylase |automated matches |Bacillus sphaericus [TaxId: 1421]
d2edma1 : (SER155) (ASP199) [view usage] : b.170.1.1 |WSSV envelope protein-like |WSSV envelope protein-like |WSSV envelope protein-like |Envelope protein VP26 |White spot syndrome virus, WSSV [TaxId: 92652]
d1te5a_ : (GLU73) (ASP114) [view usage] : d.153.1.1 |Ntn hydrolase-like |N-terminal nucleophile aminohydrolases (Ntn hydrolases) |Class II glutamine amidotransferases |Hypothetical protein YafJ (PA1307) |Pseudomonas aeruginosa [TaxId: 287]
d2ofrx_ : (GLN65) (ASP114) [view usage] : b.60.1.1 |Lipocalins |Lipocalins |Retinol binding protein-like |Nitrophorin 4 |Rhodnius prolixus [TaxId: 13249]
d3otrf1 : (MET1) (THR42) [view usage] : d.54.1.0 |Enolase N-terminal domain-like |Enolase N-terminal domain-like |automated matches |automated matches |Toxoplasma gondii [TaxId: 508771]
d1usya_ : (GLY236) (CYS275) [view usage] : d.104.1.1 |Class II aaRS and biotin synthetases |Class II aaRS and biotin synthetases |Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain |ATP phosphoribosyltransferase regulatory subunit HisZ |Thermotoga maritima [TaxId: 2336]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
b.29, b.47, d.157, c.93, d.129, f.4, d.144, d.104, d.153, b.60, b.1, d.347, d.17, c.51, b.62, d.79, d.54, d.338, b.170, b.89