Tableau information
Concept source: d3mbta_ amino acid (a.a.) range (ASN55)(VAL100)
nSSEs in this Concept: 4
String of secondary struct.elems. (SSEs) defining this concept: EEEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(ASN55) (TYR61) E1
(MET67) (PHE77) E2
(LEU86) (PHE91) E3
(GLY96) (VAL100) E4
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 155.0° E2
E3 -54.5° 144.3° E3
E4 88.9° -81.2° 132.4°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±10.9° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1pqza1 : (GLU148) (LYS193) [view usage] : b.1.1.2 |Immunoglobulin-like beta-sandwich |Immunoglobulin |C1 set domains (antibody constant domain-like) |Immunomodulatory protein m144, alpha-3 domain |Murine cytomegalovirus [TaxId: 10366]
d1fcga1 : (ALA8) (THR51) [view usage] : b.1.1.4 |Immunoglobulin-like beta-sandwich |Immunoglobulin |I set domains |Fc gamma receptor ectodomain (CD32) |Human (Homo sapiens), IIa [TaxId: 9606]
d4jgma_ : (GLU280) (ARG323) [view usage] : b.1.18.1 |Immunoglobulin-like beta-sandwich |E set domains |NF-kappa-B/REL/DORSAL transcription factors, C-terminal domain |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d4fqxc2 : (PHE100) (GLY146) [view usage] : b.1.1.2 |Immunoglobulin-like beta-sandwich |Immunoglobulin |C1 set domains (antibody constant domain-like) |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1igyb3 : (SER252) (HIS302) [view usage] : b.1.1.2 |Immunoglobulin-like beta-sandwich |Immunoglobulin |C1 set domains (antibody constant domain-like) |Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma |Mouse (Mus musculus) [TaxId: 10090]
d1tme1_ : (SER141) (ALA199) [view usage] : b.121.4.1 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Positive stranded ssRNA viruses |Picornaviridae-like VP (VP1, VP2, VP3 and VP4) |Theilovirus capsid proteins |Theiler's murine encephalomyelitis virus, strain da [TaxId: 12124]
d2dm7a_ : (LEU15) (ASP49) [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2k23a_ : (THR50) (LEU94) [view usage] : b.60.1.1 |Lipocalins |Lipocalins |Retinol binding protein-like |automated matches |Norway rat (Rattus norvegicus) [TaxId: 10116]
d3d48r1 : (LYS6) (CYS51) [view usage] : b.1.2.1 |Immunoglobulin-like beta-sandwich |Fibronectin type III |Fibronectin type III |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1sgoa_ : (ALA64) (GLU105) [view usage] : d.82.3.1 |N domain of copper amine oxidase-like |Hypothetical protein c14orf129, hspc210 |Hypothetical protein c14orf129, hspc210 |Hypothetical protein c14orf129, hspc210 |Human (Homo sapiens) [TaxId: 9606]
d3hbwa_ : (LEU101) (LEU136) [view usage] : b.42.1.1 |beta-Trefoil |Cytokine |Fibroblast growth factors (FGF) |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2ydca_ : (VAL343) (THR374) [view usage] : d.61.1.3 |LigT-like |LigT-like |2',3'-cyclic nucleotide 3'-phosphodiesterase, catalytic domain |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d2co3a1 : (LEU23) (ASP68) [view usage] : b.2.3.2 |Common fold of diphtheria toxin/transcription factors/cytochrome f |Bacterial adhesins |Pilus subunits |SafA pilus subunit |Salmonella typhimurium [TaxId: 90371]
d1qqla_ : (ILE43) (GLN77) [view usage] : b.42.1.1 |beta-Trefoil |Cytokine |Fibroblast growth factors (FGF) |Keratinocyte growth factor, FGF7 |Norway rat (Rattus norvegicus) [TaxId: 10116]
d2co2a_ : (LEU23) (ASP68) [view usage] : b.2.3.2 |Common fold of diphtheria toxin/transcription factors/cytochrome f |Bacterial adhesins |Pilus subunits |automated matches |Salmonella enterica [TaxId: 28901]
d2ilxa_ : (VAL184) (LYS211) [view usage] : d.61.1.3 |LigT-like |LigT-like |2',3'-cyclic nucleotide 3'-phosphodiesterase, catalytic domain |2',3'-cyclic nucleotide 3'-phosphodiesterase, catalytic domain |Norway rat (Rattus norvegicus) [TaxId: 10116]
d3i2xa_ : (PRO60) (LYS106) [view usage] : b.42.4.1 |beta-Trefoil |STI-like |Kunitz (STI) inhibitors |automated matches |Winged bean (Psophocarpus tetragonolobus) [TaxId: 3891]
d2hqhc_ : (SER31) (ARG90) [view usage] : b.34.10.1 |SH3-like barrel |Cap-Gly domain |Cap-Gly domain |Dynactin 1 |Human (Homo sapiens) [TaxId: 9606]
d1hxna_ : (ASP232) (PRO268) [view usage] : b.66.1.1 |4-bladed beta-propeller |Hemopexin-like domain |Hemopexin-like domain |Hemopexin |Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
d2o61b2 : (TYR41) (LYS114) [view usage] : b.2.5.3 |Common fold of diphtheria toxin/transcription factors/cytochrome f |p53-like transcription factors |Rel/Dorsal transcription factors, DNA-binding domain |p50 subunit of NF-kappa B (NFKB), N-terminal domain |Human (Homo sapiens) [TaxId: 9606]
d2haza1 : (SER492) (TRP540) [view usage] : b.1.2.1 |Immunoglobulin-like beta-sandwich |Fibronectin type III |Fibronectin type III |Neural cell adhesion molecule 1, NCAM |Human (Homo sapiens) [TaxId: 9606]
d4a61a1 : (HIS0) (GLY41) [view usage] : c.55.1.1 |Ribonuclease H-like motif |Actin-like ATPase domain |Actin/HSP70 |automated matches |Escherichia coli [TaxId: 562]
d2b5ha_ : (ARG57) (ASP90) [view usage] : b.82.1.19 |Double-stranded beta-helix |RmlC-like cupins |Cysteine dioxygenase type I |Cysteine dioxygenase type I |Norway rat (Rattus norvegicus) [TaxId: 10116]
d3kcpb_ : (GLU444) (GLY503) [view usage] : b.2.2.2 |Common fold of diphtheria toxin/transcription factors/cytochrome f |Carbohydrate-binding domain |Cellulose-binding domain family III |automated matches |Clostridium thermocellum [TaxId: 203119]
d3zuni_ : (GLU94) (ASN131) [view usage] : b.3.3.1 |Prealbumin-like |VHL |VHL |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2h9fa2 : (SER345) (GLY386) [view usage] : d.21.1.4 |Diaminopimelate epimerase-like |Diaminopimelate epimerase-like |PA0793-like |Hypothetical protein PA0793 |Pseudomonas aeruginosa [TaxId: 287]
d2axwb_ : (ALA1) (ASP45) [view usage] : b.2.3.2 |Common fold of diphtheria toxin/transcription factors/cytochrome f |Bacterial adhesins |Pilus subunits |Invasin AfaD |Escherichia coli [TaxId: 562]
d4czga1 : (ALA14) (ALA52) [view usage] : c.55.1.0 |Ribonuclease H-like motif |Actin-like ATPase domain |automated matches |automated matches |Caulobacter vibrioides [TaxId: 155892]
d4pdwa_ : (GLY181) (ILE254) [view usage] : b.121.4.1 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Positive stranded ssRNA viruses |Picornaviridae-like VP (VP1, VP2, VP3 and VP4) |automated matches |Human rhinovirus 14 [TaxId: 12131]
d3exjb_ : (MET120) (LYS162) [view usage] : b.2.5.2 |Common fold of diphtheria toxin/transcription factors/cytochrome f |p53-like transcription factors |p53 DNA-binding domain-like |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d1t83c1 : (LYS7) (SER50) [view usage] : b.1.1.4 |Immunoglobulin-like beta-sandwich |Immunoglobulin |I set domains |Fc gamma receptor ectodomain (CD32) |Human (Homo sapiens), III [TaxId: 9606]
d3ft1c_ : (LYS59) (GLU96) [view usage] : b.7.3.0 |C2 domain-like |PHL pollen allergen |automated matches |automated matches |Timothy grass (Phleum pratense) [TaxId: 15957]
d3mzgb1 : (MET1) (CYS51) [view usage] : b.1.2.1 |Immunoglobulin-like beta-sandwich |Fibronectin type III |Fibronectin type III |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1bqka_ : (ALA1) (GLY47) [view usage] : b.6.1.1 |Cupredoxin-like |Cupredoxins |Plastocyanin/azurin-like |Pseudoazurin |Achromobacter cycloclastes [TaxId: 223]
d2y3xa_ : (GLY344) (THR374) [view usage] : d.61.1.3 |LigT-like |LigT-like |2',3'-cyclic nucleotide 3'-phosphodiesterase, catalytic domain |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d3jv0a_ : (LEU281) (ARG323) [view usage] : b.1.18.1 |Immunoglobulin-like beta-sandwich |E set domains |NF-kappa-B/REL/DORSAL transcription factors, C-terminal domain |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d2huha1 : (THR90) (SER138) [view usage] : b.7.5.1 |C2 domain-like |Smr-associated domain-like |Smr-associated domain |Putative DNA mismatch repair protein BT2179 |Bacteroides thetaiotaomicron [TaxId: 818]
d3zrci_ : (GLU94) (ASN131) [view usage] : b.3.3.1 |Prealbumin-like |VHL |VHL |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1u3em1 : (MET1) (LYS36) [view usage] : d.4.1.3 |His-Me finger endonucleases |His-Me finger endonucleases |Intron-encoded homing endonucleases |Intron-encoded homing endonuclease I-HmuI |Bacteriophage SPO1 [TaxId: 10685]
d4fl4b_ : (ILE21) (GLY81) [view usage] : b.2.2.2 |Common fold of diphtheria toxin/transcription factors/cytochrome f |Carbohydrate-binding domain |Cellulose-binding domain family III |Scaffolding dockerin binding protein A, SdbA |Clostridium thermocellum [TaxId: 1515]
d1p4ih_ : (GLN3) (TRP54) [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |Immunoglobulin heavy chain variable domain, VH |Mouse (Mus musculus), cluster 5 [TaxId: 10090]
d3jv5b_ : (ASN227) (ASP275) [view usage] : b.1.18.0 |Immunoglobulin-like beta-sandwich |E set domains |automated matches |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d2axwa1 : (ALA1) (ASP45) [view usage] : b.2.3.2 |Common fold of diphtheria toxin/transcription factors/cytochrome f |Bacterial adhesins |Pilus subunits |Invasin AfaD |Escherichia coli [TaxId: 562]
d1pmya_ : (ASP1) (GLY47) [view usage] : b.6.1.1 |Cupredoxin-like |Cupredoxins |Plastocyanin/azurin-like |Pseudoazurin |Methylobacterium extorquens, strain am1 [TaxId: 408]
d1u58a1 : (GLU149) (LYS194) [view usage] : b.1.1.2 |Immunoglobulin-like beta-sandwich |Immunoglobulin |C1 set domains (antibody constant domain-like) |Immunomodulatory protein m144, alpha-3 domain |Murine cytomegalovirus [TaxId: 10366]
d1bvnt_ : (THR813) (LEU844) [view usage] : b.5.1.1 |alpha-Amylase inhibitor tendamistat |alpha-Amylase inhibitor tendamistat |alpha-Amylase inhibitor tendamistat |alpha-Amylase inhibitor tendamistat |Streptomyces tendae [TaxId: 1932]
d4ibza_ : (THR123) (ALA161) [view usage] : b.2.5.2 |Common fold of diphtheria toxin/transcription factors/cytochrome f |p53-like transcription factors |p53 DNA-binding domain-like |p53 tumor suppressor, DNA-binding domain |Human (Homo sapiens) [TaxId: 9606]
d2b59a1 : (GLU22) (GLY81) [view usage] : b.2.2.2 |Common fold of diphtheria toxin/transcription factors/cytochrome f |Carbohydrate-binding domain |Cellulose-binding domain family III |Scaffolding dockerin binding protein A, SdbA |Clostridium thermocellum [TaxId: 1515]
d1n6ua1 : (CYS12) (VAL55) [view usage] : b.1.2.1 |Immunoglobulin-like beta-sandwich |Fibronectin type III |Fibronectin type III |Interferon-alpha/beta receptor beta chain |Human (Homo sapiens) [TaxId: 9606]
d1vkxb1 : (VAL551) (ASP597) [view usage] : b.1.18.1 |Immunoglobulin-like beta-sandwich |E set domains |NF-kappa-B/REL/DORSAL transcription factors, C-terminal domain |p50 subunit of NF-kappa B transcription factor |Mouse (Mus musculus) [TaxId: 10090]
d1stxa_ : (GLY60) (GLY108) [view usage] : c.52.1.2 |Restriction endonuclease-like |Restriction endonuclease-like |Restriction endonuclease EcoRV |Restriction endonuclease EcoRV |Escherichia coli [TaxId: 562]
d1ckla2 : (PRO66) (GLY101) [view usage] : g.18.1.1 |Complement control module/SCR domain |Complement control module/SCR domain |Complement control module/SCR domain |CD46 (membrane cofactor protein, MCP) |Human (Homo sapiens) [TaxId: 9606]
d1w4ta1 : (GLU92) (ASP159) [view usage] : d.3.1.5 |Cysteine proteinases |Cysteine proteinases |Arylamine N-acetyltransferase |Arylamine N-acetyltransferase |Pseudomonas aeruginosa [TaxId: 287]
d1kenh1 : (HIS3) (GLY50) [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |Immunoglobulin heavy chain variable domain, VH |Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]
d2ia9a1 : (THR4) (PRO48) [view usage] : d.366.1.1 |SpoVG-like |SpoVG-like |SpoVG-like |Putative septation protein SpoVG |Bacillus subtilis [TaxId: 1423]
d1k7ya3 : (GLY1162) (HIS1184) [view usage] : d.173.1.1 |Methionine synthase activation domain-like |Methionine synthase activation domain-like |Methionine synthase SAM-binding domain |Methionine synthase SAM-binding domain |Escherichia coli [TaxId: 562]
d3ft9a_ : (LYS59) (PRO95) [view usage] : b.7.3.0 |C2 domain-like |PHL pollen allergen |automated matches |automated matches |Timothy grass (Phleum pratense) [TaxId: 15957]
d1cpya_ : (ARG367) (HIS397) [view usage] : c.69.1.5 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Serine carboxypeptidase-like |Serine carboxypeptidase II |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1c7sa1 : (PRO820) (ARG854) [view usage] : b.1.18.2 |Immunoglobulin-like beta-sandwich |E set domains |E-set domains of sugar-utilizing enzymes |Bacterial chitobiase (N-acetyl-beta-glucoseaminidase), C-terminal domain |Serratia marcescens [TaxId: 615]
d1tvda_ : (ASP1) (PHE46) [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |T-cell antigen receptor |Human (Homo sapiens), delta-chain [TaxId: 9606]
d2eeba_ : (ARG13) (GLU56) [view usage] : b.1.18.10 |Immunoglobulin-like beta-sandwich |E set domains |Filamin repeat (rod domain) |Filamin b |Human (Homo sapiens) [TaxId: 9606]
d1svcp1 : (LEU251) (ASP300) [view usage] : b.1.18.1 |Immunoglobulin-like beta-sandwich |E set domains |NF-kappa-B/REL/DORSAL transcription factors, C-terminal domain |p50 subunit of NF-kappa B transcription factor |Human (Homo sapiens) [TaxId: 9606]
d1gigh1 : (GLN3) (GLY49) [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |Immunoglobulin heavy chain variable domain, VH |Mouse (Mus musculus), cluster 5 [TaxId: 10090]
d2psmc1 : (THR3) (GLY39) [view usage] : g.18.1.1 |Complement control module/SCR domain |Complement control module/SCR domain |Complement control module/SCR domain |Interleukin-15 receptor subunit alpha |Mouse (Mus musculus) [TaxId: 10090]
d2afja1 : (GLY77) (GLY132) [view usage] : b.29.1.22 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |SPRY domain |SPRY domain-containing SOCS box protein 2 |Mouse (Mus musculus) [TaxId: 10090]
d4am0r_ : (GLY304) (GLY349) [view usage] : b.1.18.0 |Immunoglobulin-like beta-sandwich |E set domains |automated matches |automated matches |Dengue virus [TaxId: 11070]
d2kvaa_ : (ALA660) (GLU708) [view usage] : b.64.1.1 |Mannose 6-phosphate receptor domain |Mannose 6-phosphate receptor domain |Mannose 6-phosphate receptor domain |Cation-independent mannose-6-phosphate receptor (MIR-receptor) |Cow (Bos taurus) [TaxId: 9913]
d2b0ra_ : (GLU152) (VAL197) [view usage] : b.80.5.0 |Single-stranded right-handed beta-helix |C-terminal domain of adenylylcyclase associated protein |automated matches |automated matches |Cryptosporidium parvum [TaxId: 5807]
d1boto1 : (ILE6) (ASP48) [view usage] : c.55.1.4 |Ribonuclease H-like motif |Actin-like ATPase domain |Glycerol kinase |Glycerol kinase |Escherichia coli [TaxId: 562]
d2y1pa_ : (VAL343) (THR374) [view usage] : d.61.1.3 |LigT-like |LigT-like |2',3'-cyclic nucleotide 3'-phosphodiesterase, catalytic domain |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d3jv5c_ : (ASN227) (ASP275) [view usage] : b.1.18.0 |Immunoglobulin-like beta-sandwich |E set domains |automated matches |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d1bira_ : (PRO55) (GLU102) [view usage] : d.1.1.4 |Microbial ribonucleases |Microbial ribonucleases |Fungal ribonucleases |RNase T1 |Fungus (Aspergillus oryzae) [TaxId: 5062]
d2erma_ : (ILE56) (THR92) [view usage] : b.42.1.1 |beta-Trefoil |Cytokine |Fibroblast growth factors (FGF) |Acidic FGF (FGF1) |Human (Homo sapiens) [TaxId: 9606]
d3dkma_ : (ALA1280) (GLY1327) [view usage] : b.34.19.1 |SH3-like barrel |Mib/herc2 domain-like |Mib/herc2 domain |E3 ubiquitin-protein ligase hectd1 |Human (Homo sapiens) [TaxId: 9606]
d2qosc_ : (ALA52) (GLN95) [view usage] : b.60.1.1 |Lipocalins |Lipocalins |Retinol binding protein-like |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2ia9d_ : (THR4) (PRO53) [view usage] : d.366.1.1 |SpoVG-like |SpoVG-like |SpoVG-like |Putative septation protein SpoVG |Bacillus subtilis [TaxId: 1423]
d2i9xa1 : (THR4) (PRO53) [view usage] : d.366.1.1 |SpoVG-like |SpoVG-like |SpoVG-like |Putative septation protein SpoVG |Staphylococcus epidermidis [TaxId: 1282]
d1dq3a2 : (GLY355) (SER386) [view usage] : d.50.3.1 |dsRBD-like |YcfA/nrd intein domain |PI-Pfui intein middle domain |PI-Pfui intein middle domain |Pyrococcus furiosus [TaxId: 2261]
d3crea1 : (ASP22) (ASP68) [view usage] : b.2.3.2 |Common fold of diphtheria toxin/transcription factors/cytochrome f |Bacterial adhesins |Pilus subunits |SafA pilus subunit |Salmonella typhimurium [TaxId: 90371]
d1ar1c_ : (VAL2) (TRP47) [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |Immunoglobulin heavy chain variable domain, VH |Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]
d1g0sb_ : (VAL16) (ILE75) [view usage] : d.113.1.1 |Nudix |Nudix |MutT-like |ADP-ribose pyrophosphatase |Escherichia coli [TaxId: 562]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
b.80, b.82, c.69, b.29, c.55, b.60, b.121, d.3, b.2, b.6, b.1, b.42, d.21, c.52, b.34, b.7, b.3, d.1, d.113, d.4,
d.82, g.18, b.66, d.50, b.64, d.366, b.5, d.173, d.61