Tableau information
Concept source: d1avgi_ amino acid (a.a.) range (VAL65)(THR116)
nSSEs in this Concept: 4
String of secondary struct.elems. (SSEs) defining this concept: EEEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(VAL65) (GLN71) E1
(GLN79) (SER87) E2
(PHE92) (PHE98) E3
(PHE106) (THR116) E4
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 145.5° E2
E3 -59.9° 145.6° E3
E4 100.5° -58.9° 155.4°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±10.9° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d3fhua_ : (MET77) (ASN119) [view usage] : d.24.1.1 |Pili subunits |Pili subunits |Pilin |automated matches |Salmonella typhi [TaxId: 601]
d2b5la4 : (PRO635) (VAL671) [view usage] : b.69.4.3 |7-bladed beta-propeller |WD40 repeat-like |DDB1-like |DDB1 |Human (Homo sapiens) [TaxId: 9606]
d1ovza1 : (PRO8) (PHE56) [view usage] : b.1.1.4 |Immunoglobulin-like beta-sandwich |Immunoglobulin |I set domains |Ig alpha Fc receptor, FCARI (CD89) |Human (Homo sapiens) [TaxId: 9606]
d2iobb2 : (ASN141) (GLN191) [view usage] : d.3.1.15 |Cysteine proteinases |Cysteine proteinases |CHAP domain |Glutathionylspermidine synthase, amidase domain |Escherichia coli [TaxId: 562]
d1j71a_ : (SER1) (ASP44) [view usage] : b.50.1.2 |Acid proteases |Acid proteases |Pepsin-like |Acid protease |Yeast (Candida tropicalis) [TaxId: 5482]
d1shwb_ : (THR348) (ARG407) [view usage] : b.18.1.4 |Galactose-binding domain-like |Galactose-binding domain-like |Ephrin receptor ligand binding domain |Ligand-binding domain of the ephb2 receptor tyrosine kinase |Mouse (Mus musculus) [TaxId: 10090]
d1twci2 : (LEU68) (ASP113) [view usage] : g.41.3.1 |Rubredoxin-like |Zinc beta-ribbon |Transcriptional factor domain |RBP9 subunit of RNA polymerase II |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1m56b1 : (ASP195) (VAL231) [view usage] : b.6.1.2 |Cupredoxin-like |Cupredoxins |Periplasmic domain of cytochrome c oxidase subunit II |Cytochrome c oxidase |Rhodobacter sphaeroides [TaxId: 1063]
d1pt2a_ : (GLY81) (GLY140) [view usage] : b.67.2.2 |5-bladed beta-propeller |Arabinanase/levansucrase/invertase |Levansucrase |Levansucrase |Bacillus subtilis [TaxId: 1423]
d2gsmb1 : (ASP195) (VAL231) [view usage] : b.6.1.2 |Cupredoxin-like |Cupredoxins |Periplasmic domain of cytochrome c oxidase subunit II |Cytochrome c oxidase |Rhodobacter sphaeroides [TaxId: 1063]
d3cu9a_ : (CYS272) (VAL315) [view usage] : b.67.2.1 |5-bladed beta-propeller |Arabinanase/levansucrase/invertase |alpha-L-arabinanase-like |automated matches |Geobacillus stearothermophilus [TaxId: 1422]
d1tzaa_ : (GLU71) (THR121) [view usage] : b.1.23.1 |Immunoglobulin-like beta-sandwich |ApaG-like |ApaG-like |ApaG |Shewanella oneidensis [TaxId: 70863]
d1cz4a1 : (ASN4) (ARG53) [view usage] : b.52.2.3 |Double psi beta-barrel |ADC-like |Cdc48 N-terminal domain-like |N-terminal domain of VAT-N, VAT-Nn |Thermoplasma acidophilum [TaxId: 2303]
d2o62a2 : (PHE19) (ARG64) [view usage] : b.60.1.9 |Lipocalins |Lipocalins |All1756-like |Uncharacterized protein All1756 ortholog |Nostoc punctiforme [TaxId: 272131]
d3ehbb1 : (ASP159) (ASP193) [view usage] : b.6.1.2 |Cupredoxin-like |Cupredoxins |Periplasmic domain of cytochrome c oxidase subunit II |Cytochrome c oxidase |Paracoccus denitrificans [TaxId: 266]
d2ohha1 : (ALA3) (ASP50) [view usage] : d.157.1.0 |Metallo-hydrolase/oxidoreductase |Metallo-hydrolase/oxidoreductase |automated matches |automated matches |Methanothermobacter thermautotrophicus [TaxId: 145262]
d2eywa_ : (PHE141) (PRO183) [view usage] : b.34.2.0 |SH3-like barrel |SH3-domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1e8ma1 : (CYS78) (LEU114) [view usage] : b.69.7.1 |7-bladed beta-propeller |Peptidase/esterase 'gauge' domain |Prolyl oligopeptidase, N-terminal domain |Prolyl oligopeptidase, N-terminal domain |Pig (Sus scrofa) [TaxId: 9823]
d1z66a_ : (GLU351) (LYS395) [view usage] : b.1.18.0 |Immunoglobulin-like beta-sandwich |E set domains |automated matches |automated matches |Langat virus [TaxId: 11085]
d2jexa_ : (ASN136) (TYR170) [view usage] : b.91.1.0 |E2 regulatory, transactivation domain |E2 regulatory, transactivation domain |automated matches |automated matches |Bovine papillomavirus type 1 [TaxId: 10559]
d1tf7a1 : (ASP202) (PRO248) [view usage] : c.37.1.11 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |RecA protein-like (ATPase-domain) |Circadian clock protein KaiC |Synechococcus elongatus PCC 7942 [TaxId: 1140]
d2ia9b_ : (ALA0) (PRO53) [view usage] : d.366.1.1 |SpoVG-like |SpoVG-like |SpoVG-like |Putative septation protein SpoVG |Bacillus subtilis [TaxId: 1423]
d2j98b_ : (ILE22) (LEU65) [view usage] : b.140.1.0 |Replicase NSP9 |Replicase NSP9 |automated matches |automated matches |Human coronavirus 229E [TaxId: 11137]
d2l29a_ : (GLY1537) (GLY1575) [view usage] : b.64.1.1 |Mannose 6-phosphate receptor domain |Mannose 6-phosphate receptor domain |Mannose 6-phosphate receptor domain |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1i3qi2 : (LEU68) (ASP113) [view usage] : g.41.3.1 |Rubredoxin-like |Zinc beta-ribbon |Transcriptional factor domain |RBP9 subunit of RNA polymerase II |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d3ee7b_ : (ALA28) (PRO71) [view usage] : b.140.1.1 |Replicase NSP9 |Replicase NSP9 |Replicase NSP9 |automated matches |SARS coronavirus [TaxId: 227859]
d2f1na1 : (ALA52) (ASN103) [view usage] : d.151.1.1 |DNase I-like |DNase I-like |DNase I-like |Cytolethal distending toxin subunit B |Escherichia coli [TaxId: 562]
d3byka_ : (GLY81) (GLY140) [view usage] : b.67.2.2 |5-bladed beta-propeller |Arabinanase/levansucrase/invertase |Levansucrase |Levansucrase |Bacillus subtilis [TaxId: 1423]
d1jsga_ : (ASP16) (ARG53) [view usage] : b.63.1.1 |Oncogene products |Oncogene products |Oncogene products |p14-TCL1 |Human (Homo sapiens) [TaxId: 9606]
d3c2ua1 : (TYR144) (TYR192) [view usage] : b.67.2.0 |5-bladed beta-propeller |Arabinanase/levansucrase/invertase |automated matches |automated matches |Selenomonas ruminantium [TaxId: 971]
d2y3nc_ : (VAL6) (ASP51) [view usage] : b.2.2.2 |Common fold of diphtheria toxin/transcription factors/cytochrome f |Carbohydrate-binding domain |Cellulose-binding domain family III |automated matches |Bacteroides cellulosolvens [TaxId: 35825]
d2r58a2 : (GLY317) (ASN360) [view usage] : b.34.9.0 |SH3-like barrel |Tudor/PWWP/MBT |automated matches |automated matches |Fruit fly (Drosophila melanogaster) [TaxId: 7227]
d4fp8a_ : (ASP271) (VAL297) [view usage] : b.19.1.2 |Viral protein domain |Viral protein domain |Influenza hemagglutinin headpiece |Hemagglutinin |Influenza A virus, different strains [TaxId: 11320]
d2f09a1 : (MET1) (GLN39) [view usage] : b.61.8.1 |Streptavidin-like |YdhA-like |YdhA-like |Hypothetical protein YdhA |Escherichia coli [TaxId: 562]
d1mrla_ : (GLY137) (LYS165) [view usage] : b.81.1.3 |Single-stranded left-handed beta-helix |Trimeric LpxA-like enzymes |Galactoside acetyltransferase-like |Xenobiotic acetyltransferase |Enterococcus faecium, VAT(D) [TaxId: 1352]
d4k6lf_ : (ARG79) (ARG127) [view usage] : d.151.1.0 |DNase I-like |DNase I-like |automated matches |automated matches |Salmonella enterica [TaxId: 90370]
d1jcha1 : (GLY477) (ARG520) [view usage] : b.101.1.1 |Ribonuclease domain of colicin E3 |Ribonuclease domain of colicin E3 |Ribonuclease domain of colicin E3 |Ribonuclease domain of colicin E3 |Escherichia coli [TaxId: 562]
d1mixa2 : (GLY309) (SER352) [view usage] : b.55.1.5 |PH domain-like barrel |PH domain-like |Third domain of FERM |Talin |Chicken (Gallus gallus) [TaxId: 9031]
d3dtub1 : (ASP195) (VAL231) [view usage] : b.6.1.2 |Cupredoxin-like |Cupredoxins |Periplasmic domain of cytochrome c oxidase subunit II |Cytochrome c oxidase |Rhodobacter sphaeroides [TaxId: 1063]
d2ri3a2 : (GLY348) (CYS390) [view usage] : b.34.9.0 |SH3-like barrel |Tudor/PWWP/MBT |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2atcb2 : (GLU101) (SER145) [view usage] : g.41.7.1 |Rubredoxin-like |Aspartate carbamoyltransferase, Regulatory-chain, C-terminal domain |Aspartate carbamoyltransferase, Regulatory-chain, C-terminal domain |Aspartate carbamoyltransferase, Regulatory-chain, C-terminal domain |Escherichia coli [TaxId: 562]
d2yuua_ : (GLN9) (HIS56) [view usage] : g.49.1.0 |Cysteine-rich domain |Cysteine-rich domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3d60a_ : (HIS271) (LEU313) [view usage] : b.67.2.1 |5-bladed beta-propeller |Arabinanase/levansucrase/invertase |alpha-L-arabinanase-like |automated matches |Geobacillus stearothermophilus [TaxId: 1422]
d2dk3a1 : (ALA20) (SER63) [view usage] : b.34.19.1 |SH3-like barrel |Mib/herc2 domain-like |Mib/herc2 domain |E3 ubiquitin-protein ligase hectd1 |Human (Homo sapiens) [TaxId: 9606]
d2ky8a_ : (GLY6) (SER47) [view usage] : d.10.1.0 |DNA-binding domain |DNA-binding domain |automated matches |automated matches |Chicken (Gallus gallus) [TaxId: 9031]
d1qypa_ : (LEU11) (ARG54) [view usage] : g.41.3.1 |Rubredoxin-like |Zinc beta-ribbon |Transcriptional factor domain |RBP9 subunit of RNA polymerase II |Thermococcus celer [TaxId: 2264]
d2rjcc2 : (GLY348) (ASP391) [view usage] : b.34.9.0 |SH3-like barrel |Tudor/PWWP/MBT |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2ja5i2 : (LEU68) (ASP113) [view usage] : g.41.3.1 |Rubredoxin-like |Zinc beta-ribbon |Transcriptional factor domain |RBP9 subunit of RNA polymerase II |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d2r57a2 : (GLY317) (ASN360) [view usage] : b.34.9.0 |SH3-like barrel |Tudor/PWWP/MBT |automated matches |automated matches |Fruit fly (Drosophila melanogaster) [TaxId: 7227]
d2j98a_ : (LEU29) (LEU65) [view usage] : b.140.1.0 |Replicase NSP9 |Replicase NSP9 |automated matches |automated matches |Human coronavirus 229E [TaxId: 11137]
d1e2ta_ : (ARG88) (LEU136) [view usage] : d.3.1.5 |Cysteine proteinases |Cysteine proteinases |Arylamine N-acetyltransferase |Arylamine N-acetyltransferase |Salmonella typhimurium [TaxId: 90371]
d4m9cd_ : (GLY186) (GLU214) [view usage] : b.81.1.0 |Single-stranded left-handed beta-helix |Trimeric LpxA-like enzymes |automated matches |automated matches |Acinetobacter baumannii [TaxId: 470]
d3mdjb1 : (TYR57) (SER103) [view usage] : b.98.1.0 |Zn aminopeptidase N-terminal domain |Zn aminopeptidase N-terminal domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1rmga_ : (ILE318) (THR376) [view usage] : b.80.1.3 |Single-stranded right-handed beta-helix |Pectin lyase-like |Galacturonase |Rhamnogalacturonase A |Fungus (Aspergillus aculeatus) [TaxId: 5053]
d1yi9a1 : (PRO53) (ILE95) [view usage] : b.121.1.2 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |PHM/PNGase F |Peptidylglycine alpha-hydroxylating monooxygenase, PHM |Peptidylglycine alpha-hydroxylating monooxygenase, PHM |Norway rat (Rattus norvegicus) [TaxId: 10116]
d2p84a1 : (ASP76) (TYR108) [view usage] : b.172.1.1 |YopX-like |YopX-like |YopX-like |Orf041 product |Staphylococcus phage 37 [TaxId: 320840]
d3iuna1 : (ALA80) (LEU115) [view usage] : b.69.7.0 |7-bladed beta-propeller |Peptidase/esterase 'gauge' domain |automated matches |automated matches |Aeromonas punctata [TaxId: 648]
d1gwya_ : (GLU61) (VAL104) [view usage] : b.97.1.1 |Cytolysin/lectin |Cytolysin/lectin |Anemone pore-forming cytolysin |Sticholysin II |Carribean sea anemone (Stoichactis helianthus) [TaxId: 6123]
d2jmma_ : (THR6) (THR60) [view usage] : f.4.1.1 |Transmembrane beta-barrels |OMPA-like |Outer membrane protein |Outer membrane protein A (OMPA) transmembrane domain |Escherichia coli [TaxId: 562]
d2w8ba2 : (ARG287) (THR328) [view usage] : b.68.4.1 |6-bladed beta-propeller |TolB, C-terminal domain |TolB, C-terminal domain |automated matches |Escherichia coli [TaxId: 562]
d1a8da2 : (LYS311) (VAL364) [view usage] : b.42.4.2 |beta-Trefoil |STI-like |Clostridium neurotoxins, C-terminal domain |Tetanus neurotoxin |Clostridium tetani [TaxId: 1513]
d1e44b_ : (ASP23) (ARG65) [view usage] : b.101.1.1 |Ribonuclease domain of colicin E3 |Ribonuclease domain of colicin E3 |Ribonuclease domain of colicin E3 |Ribonuclease domain of colicin E3 |Escherichia coli [TaxId: 562]
d1je4a_ : (SER5) (ASP53) [view usage] : d.9.1.1 |IL8-like |Interleukin 8-like chemokines |Interleukin 8-like chemokines |Macrophage inflammatory protein, MIP |Human (Homo sapiens), 1-beta [TaxId: 9606]
d4a4fa_ : (GLY76) (VAL116) [view usage] : b.34.9.0 |SH3-like barrel |Tudor/PWWP/MBT |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3er7a1 : (GLN62) (PRO119) [view usage] : d.17.4.24 |Cystatin-like |NTF2-like |Exig0174-like |Uncharacterized protein Exig0174 |Exiguobacterium sibiricum 255-15 [TaxId: 262543]
d1urza1 : (VAL354) (GLY396) [view usage] : b.1.18.4 |Immunoglobulin-like beta-sandwich |E set domains |Class II viral fusion proteins C-terminal domain |Envelope glycoprotein |Tick-borne encephalitis virus [TaxId: 11084]
d1fhwa_ : (LEU271) (GLU311) [view usage] : b.55.1.1 |PH domain-like barrel |PH domain-like |Pleckstrin-homology domain (PH domain) |Grp1 |Mouse (Mus musculus) [TaxId: 10090]
d2kz1b1 : (THR13) (VAL55) [view usage] : b.1.2.1 |Immunoglobulin-like beta-sandwich |Fibronectin type III |Fibronectin type III |Interferon-alpha/beta receptor beta chain |Human (Homo sapiens) [TaxId: 9606]
d3bibx_ : (LYS61) (ARG111) [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d1xtoa_ : (GLY144) (PRO198) [view usage] : d.157.1.6 |Metallo-hydrolase/oxidoreductase |Metallo-hydrolase/oxidoreductase |Coenzyme PQQ synthesis protein B, PqqB |Coenzyme PQQ synthesis protein B, PqqB |Pseudomonas putida [TaxId: 303]
d1yjka1 : (PRO53) (ILE95) [view usage] : b.121.1.2 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |PHM/PNGase F |Peptidylglycine alpha-hydroxylating monooxygenase, PHM |Peptidylglycine alpha-hydroxylating monooxygenase, PHM |Norway rat (Rattus norvegicus) [TaxId: 10116]
d2b5la1 : (GLU312) (THR354) [view usage] : b.69.4.3 |7-bladed beta-propeller |WD40 repeat-like |DDB1-like |DDB1 |Human (Homo sapiens) [TaxId: 9606]
d2pyta1 : (VAL126) (ASN170) [view usage] : b.82.1.24 |Double-stranded beta-helix |RmlC-like cupins |EutQ-like |Ethanolamine utilization protein EutQ |Salmonella typhimurium [TaxId: 90371]
d3eaaa_ : (HIS104) (LEU157) [view usage] : b.157.1.0 |Hcp1-like |Hcp1-like |automated matches |automated matches |Edwardsiella tarda [TaxId: 636]
d1ahsa_ : (ARG140) (GLN169) [view usage] : b.19.1.1 |Viral protein domain |Viral protein domain |Top domain of virus capsid protein |RDV p8, central (top) domain |African horse sickness virus [TaxId: 40050]
d4wjka_ : (VAL23) (PRO69) [view usage] : b.69.8.0 |7-bladed beta-propeller |Integrin alpha N-terminal domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d4mo3m_ : (ARG2270) (GLY2325) [view usage] : b.18.1.2 |Galactose-binding domain-like |Galactose-binding domain-like |Discoidin domain (FA58C, coagulation factor 5/8 C-terminal domain) |automated matches |Pig (Sus scrofa) [TaxId: 9823]
d1kd6a_ : (SER141) (HIS175) [view usage] : b.97.1.1 |Cytolysin/lectin |Cytolysin/lectin |Anemone pore-forming cytolysin |Equinatoxin II (eqtII, tenebrosin C) |European sea anemone (Actinia equina) [TaxId: 6106]
d1lf3a_ : (ASN3) (PRO43) [view usage] : b.50.1.2 |Acid proteases |Acid proteases |Pepsin-like |Plasmepsin (a hemoglobin-degrading enzyme) |Plasmodium falciparum, plasmepsin II [TaxId: 5833]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
b.68, b.80, b.82, b.19, b.81, b.69, b.67, d.157, b.50, f.4, c.37, d.151, b.60, b.18, b.121, d.3, b.2, b.6, b.1, b.42,
d.17, b.52, b.55, b.34, b.91, b.61, b.97, b.98, d.24, d.9, g.41, b.64, b.172, b.140, b.157, d.366, b.63, d.10, g.49, b.101