Tableau information
Concept source: d3iweb1 amino acid (a.a.) range (PHE225)(PHE247)
nSSEs in this Concept: 4
String of secondary struct.elems. (SSEs) defining this concept: EEEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(PHE225) (PRO230) E1
(ASN232) (TYR236) E2
(ASP237) (LYS241) E3
(LYS241) (PHE247) E4
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 -75.2° E2
E3 -120.0° 160.7° E3
E4 155.9° 103.1° -68.1°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±10.2° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1ebfa2 : (ASN282) (ASP306) [view usage] : d.81.1.2 |FwdE/GAPDH domain-like |Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain |Homoserine dehydrogenase-like |Homoserine dehydrogenase |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1e8vb_ : (ARG485) (SER508) [view usage] : b.68.1.1 |6-bladed beta-propeller |Sialidases |Sialidases (neuraminidases) |Paramyxovirus hemagglutinin-neuraminidase head domain |Newcastle disease virus [TaxId: 11176]
d1fjra_ : (TYR163) (CYS185) [view usage] : b.102.1.1 |Methuselah ectodomain |Methuselah ectodomain |Methuselah ectodomain |Methuselah ectodomain |Fruit fly (Drosophila melanogaster) [TaxId: 7227]
d2rhba2 : (THR274) (LEU297) [view usage] : d.294.1.2 |EndoU-like |EndoU-like |Nsp15 C-terminal domain-like |Nsp15, C-terminal domain |SARS coronavirus [TaxId: 227859]
d1i19a2 : (ASP69) (LYS95) [view usage] : d.145.1.1 |FAD-binding/transporter-associated domain-like |FAD-binding/transporter-associated domain-like |FAD-linked oxidases, N-terminal domain |Cholesterol oxidase |Brevibacterium sterolicum [TaxId: 1702]
d1xpna_ : (GLY43) (GLU70) [view usage] : b.3.7.1 |Prealbumin-like |Hypothetical protein PA1324 |Hypothetical protein PA1324 |Hypothetical protein PA1324 |Pseudomonas aeruginosa [TaxId: 287]
d3mr1b_ : (ASN158) (ASN205) [view usage] : d.127.1.0 |Creatinase/aminopeptidase |Creatinase/aminopeptidase |automated matches |automated matches |Rickettsia prowazekii [TaxId: 782]
d2r7da2 : (GLU168) (LYS196) [view usage] : b.40.4.16 |OB-fold |Nucleic acid-binding proteins |RNB domain-like |Ribonuclease II family protein DR0020 |Deinococcus radiodurans [TaxId: 1299]
d2x4ma_ : (ASP187) (GLY232) [view usage] : f.4.4.0 |Transmembrane beta-barrels |OMPT-like |automated matches |automated matches |Yersinia pestis [TaxId: 632]
d1xhxa2 : (GLY549) (ILE574) [view usage] : e.8.1.1 |DNA/RNA polymerases |DNA/RNA polymerases |DNA polymerase I |phi29 DNA polymerase |Bacteriophage phi-29 [TaxId: 10756]
d1slia2 : (ASN465) (ASN490) [view usage] : b.68.1.1 |6-bladed beta-propeller |Sialidases |Sialidases (neuraminidases) |Leech intramolecular trans-sialidase, C-terminal domain |North american leech (Macrobdella decora) [TaxId: 6405]
d2gina_ : (LYS81) (THR107) [view usage] : b.159.1.1 |AOC barrel-like |Allene oxide cyclase-like |Allene oxide cyclase-like |Allene oxide cyclase, AOC |Thale cress (Arabidopsis thaliana), chloroplast AOC2 [TaxId: 3702]
d1mr6a_ : (MET1) (THR63) [view usage] : g.7.1.1 |Snake toxin-like |Snake toxin-like |Snake venom toxins |Bungarotoxin |Many-banded krait (Bungarus multicinctus), gamma-bungarotoxin [TaxId: 8616]
d3qrdc_ : (VAL60) (VAL104) [view usage] : d.17.1.2 |Cystatin-like |Cystatin/monellin |Cystatins |Cystatin C |Human (Homo sapiens) [TaxId: 9606]
d4keha_ : (ILE139) (LEU164) [view usage] : d.38.1.2 |Thioesterase/thiol ester dehydrase-isomerase |Thioesterase/thiol ester dehydrase-isomerase |beta-Hydroxydecanol thiol ester dehydrase |beta-Hydroxydecanol thiol ester dehydrase |Escherichia coli [TaxId: 562]
d1ntya2 : (ILE1428) (GLU1454) [view usage] : b.55.1.1 |PH domain-like barrel |PH domain-like |Pleckstrin-homology domain (PH domain) |Triple functional domain protein TRIO |Human (Homo sapiens) [TaxId: 9606]
d3mr1a_ : (ASN158) (ASN205) [view usage] : d.127.1.0 |Creatinase/aminopeptidase |Creatinase/aminopeptidase |automated matches |automated matches |Rickettsia prowazekii [TaxId: 782]
d1naqc_ : (ALA38) (LEU66) [view usage] : d.58.5.2 |Ferredoxin-like |GlnB-like |Divalent ion tolerance proteins CutA (CutA1) |Cut A1 |Escherichia coli [TaxId: 562]
d1fmba_ : (GLU61) (ASP84) [view usage] : b.50.1.1 |Acid proteases |Acid proteases |Retroviral protease (retropepsin) |EIAV protease |Equine infectious anemia virus [TaxId: 11665]
d1cb8a3 : (ASN534) (ILE567) [view usage] : b.30.5.2 |Supersandwich |Galactose mutarotase-like |Hyaluronate lyase-like, central domain |Chondroitinase AC |Pedobacter heparinus (Flavobacterium heparinum) [TaxId: 984]
d2wnre1 : (ASP164) (PRO186) [view usage] : d.14.1.0 |Ribosomal protein S5 domain 2-like |Ribosomal protein S5 domain 2-like |automated matches |automated matches |Methanothermobacter thermautotrophicus [TaxId: 145262]
d3mwza_ : (GLY57) (ASN100) [view usage] : d.17.1.0 |Cystatin-like |Cystatin/monellin |automated matches |automated matches |Ixodes scapularis [TaxId: 6945]
d2gtha2 : (SER302) (LEU325) [view usage] : d.294.1.2 |EndoU-like |EndoU-like |Nsp15 C-terminal domain-like |Nsp15, C-terminal domain |Murine hepatitis virus, MHV [TaxId: 11138]
d1ig0a1 : (GLU258) (SER278) [view usage] : b.82.6.1 |Double-stranded beta-helix |Thiamin pyrophosphokinase, substrate-binding domain |Thiamin pyrophosphokinase, substrate-binding domain |Thiamin pyrophosphokinase, substrate-binding domain |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d2oolb1 : (TRP191) (PRO213) [view usage] : d.110.2.1 |Profilin-like |GAF domain-like |GAF domain |Sensor protein PhyB2 |Rhodopseudomonas palustris [TaxId: 1076]
d1yela1 : (PRO35) (GLY58) [view usage] : b.142.1.2 |DNA-binding pseudobarrel domain |DNA-binding pseudobarrel domain |B3 DNA binding domain |At1g16640 |Thale cress (Arabidopsis thaliana) [TaxId: 3702]
d3q62b_ : (ILE140) (LYS167) [view usage] : d.38.1.2 |Thioesterase/thiol ester dehydrase-isomerase |Thioesterase/thiol ester dehydrase-isomerase |beta-Hydroxydecanol thiol ester dehydrase |automated matches |Yersinia pseudotuberculosis [TaxId: 214092]
d4l1pb_ : (GLY407) (ARG429) [view usage] : b.34.21.1 |SH3-like barrel |Plus3-like |Plus3 |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1w26a3 : (ASP162) (ALA188) [view usage] : d.26.1.1 |FKBP-like |FKBP-like |FKBP immunophilin/proline isomerase |Trigger factor PPIase domain |Escherichia coli [TaxId: 562]
d4kehb_ : (ILE139) (LEU164) [view usage] : d.38.1.2 |Thioesterase/thiol ester dehydrase-isomerase |Thioesterase/thiol ester dehydrase-isomerase |beta-Hydroxydecanol thiol ester dehydrase |beta-Hydroxydecanol thiol ester dehydrase |Escherichia coli [TaxId: 562]
d3u1ua_ : (GLY407) (ARG429) [view usage] : b.34.21.1 |SH3-like barrel |Plus3-like |Plus3 |RNA polymerase-associated protein RTF1 homolog |Human (Homo sapiens) [TaxId: 9606]
d2h85a2 : (THR274) (LEU297) [view usage] : d.294.1.2 |EndoU-like |EndoU-like |Nsp15 C-terminal domain-like |Nsp15, C-terminal domain |SARS coronavirus [TaxId: 227859]
d1g0va_ : (GLY78) (PRO108) [view usage] : b.50.1.2 |Acid proteases |Acid proteases |Pepsin-like |Acid protease |Baker's yeast (Saccharomyces cerevisiae), proteinase A [TaxId: 4932]
d1t11a3 : (GLY161) (GLU188) [view usage] : d.26.1.1 |FKBP-like |FKBP-like |FKBP immunophilin/proline isomerase |Trigger factor PPIase domain |Vibrio cholerae [TaxId: 666]
d2kl2a_ : (GLY32) (GLU69) [view usage] : d.269.1.1 |Gamma-glutamyl cyclotransferase-like |Gamma-glutamyl cyclotransferase-like |Gamma-glutamyl cyclotransferase-like |Hypothetical protein LOC223267 |Mouse (Mus musculus) [TaxId: 10090]
d1wq9b_ : (VAL59) (MET86) [view usage] : g.17.1.1 |Cystine-knot cytokines |Cystine-knot cytokines |Platelet-derived growth factor-like |Vascular endothelial growth factor, VEGF |Russell's viper (Daboia russelli russelli) [TaxId: 8707]
d2pl5a1 : (GLY8) (GLY39) [view usage] : c.69.1.40 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |O-acetyltransferase |Homoserine O-acetyltransferase |Leptospira interrogans [TaxId: 173]
d4wjka_ : (ASP301) (PRO331) [view usage] : b.69.8.0 |7-bladed beta-propeller |Integrin alpha N-terminal domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
b.68, e.8, b.82, c.69, d.58, b.69, b.30, b.50, f.4, b.40, d.14, d.81, d.127, d.108, d.110, d.17, d.38, b.55, b.34, d.145,
b.3, d.26, g.17, g.7, b.102, b.159, d.294, b.142, d.269