Tableau information
Concept source: d2bs71_ amino acid (a.a.) range (SER107)(ASN154)
nSSEs in this Concept: 4
String of secondary struct.elems. (SSEs) defining this concept: EEEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(SER107) (ASN114) E1
(THR118) (ILE129) E2
(ALA136) (LYS142) E3
(THR143) (ASN154) E4
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 158.2° E2
E3 -43.8° 147.5° E3
E4 -51.3° 146.8° -54.0°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±13.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d3r19a2 : (ALA411) (ASP466) [view usage] : b.1.18.0 |Immunoglobulin-like beta-sandwich |E set domains |automated matches |automated matches |Chicken (Gallus gallus) [TaxId: 9031]
d1c8pa_ : (HIS59) (ASP99) [view usage] : b.1.2.1 |Immunoglobulin-like beta-sandwich |Fibronectin type III |Fibronectin type III |Common beta-chain in the GM-CSF, IL-3 and IL-5 receptors |Human (Homo sapiens) [TaxId: 9606]
d1ggtb3 : (ILE632) (ASP668) [view usage] : b.1.5.1 |Immunoglobulin-like beta-sandwich |Transglutaminase, two C-terminal domains |Transglutaminase, two C-terminal domains |Transglutaminase, two C-terminal domains |Human (Homo sapiens), blood isozyme [TaxId: 9606]
d1vpka3 : (GLU278) (GLY311) [view usage] : d.131.1.1 |DNA clamp |DNA clamp |DNA polymerase III, beta subunit |DNA polymerase III, beta subunit |Thermotoga maritima [TaxId: 2336]
d3r18a2 : (ALA411) (ASP466) [view usage] : b.1.18.0 |Immunoglobulin-like beta-sandwich |E set domains |automated matches |automated matches |Chicken (Gallus gallus) [TaxId: 9031]
d4jnjd_ : (SER88) (LYS132) [view usage] : b.61.1.1 |Streptavidin-like |Avidin/streptavidin |Avidin/streptavidin |automated matches |Streptomyces avidinii [TaxId: 1895]
d1hjca_ : (ASP133) (VAL170) [view usage] : b.2.5.6 |Common fold of diphtheria toxin/transcription factors/cytochrome f |p53-like transcription factors |RUNT domain |Acute myeloid leukemia 1 protein (AML1), RUNT domain |Mouse (Mus musculus) [TaxId: 10090]
d1yrec_ : (ARG67) (ASP103) [view usage] : d.108.1.1 |Acyl-CoA N-acyltransferases (Nat) |Acyl-CoA N-acyltransferases (Nat) |N-acetyl transferase, NAT |automated matches |Pseudomonas aeruginosa [TaxId: 208964]
d4ktyb4 : (THR628) (GLY669) [view usage] : b.1.5.0 |Immunoglobulin-like beta-sandwich |Transglutaminase, two C-terminal domains |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1t6la1 : (THR38) (THR71) [view usage] : d.131.1.2 |DNA clamp |DNA clamp |DNA polymerase processivity factor |UL44 |Human cytomegalovirus, HHV-5 [TaxId: 10359]
d2bw8a_ : (SER85) (GLY133) [view usage] : b.29.1.11 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Xylanase/endoglucanase 11/12 |Family 12 endo-1,4-beta-glucanase (cellulase) catalytic domain |Rhodothermus marinus [TaxId: 29549]
d1uf3a_ : (GLU99) (ALA133) [view usage] : d.159.1.6 |Metallo-dependent phosphatases |Metallo-dependent phosphatases |TT1561-like |Hypothetical protein TT1561 |Thermus thermophilus [TaxId: 274]
d2e8aa2 : (GLY191) (ASP225) [view usage] : c.55.1.0 |Ribonuclease H-like motif |Actin-like ATPase domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3czua_ : (ILE94) (ASP143) [view usage] : b.18.1.0 |Galactose-binding domain-like |Galactose-binding domain-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2oxha_ : (PRO73) (VAL107) [view usage] : b.1.18.0 |Immunoglobulin-like beta-sandwich |E set domains |automated matches |automated matches |Paracoccus denitrificans [TaxId: 266]
d4mzab_ : (TYR530) (SER572) [view usage] : b.68.1.1 |6-bladed beta-propeller |Sialidases |Sialidases (neuraminidases) |automated matches |Human parainfluenza 3 virus [TaxId: 11217]
d3ao9a_ : (PRO71) (GLY111) [view usage] : d.243.1.2 |Colicin D/E5 nuclease domain |Colicin D/E5 nuclease domain |Colicin E5 nuclease domain |Colicin E5 |Escherichia coli [TaxId: 562]
d3f3ha_ : (GLY83) (ASN111) [view usage] : b.1.21.1 |Immunoglobulin-like beta-sandwich |Fungal immunomodulatory protein, FIP |Fungal immunomodulatory protein, FIP |automated matches |Ganoderma lucidum [TaxId: 5315]
d1xq4c_ : (SER90) (MSE126) [view usage] : b.1.23.1 |Immunoglobulin-like beta-sandwich |ApaG-like |ApaG-like |ApaG |Bordetella pertussis [TaxId: 520]
d3deba_ : (ASN125) (SER155) [view usage] : d.92.1.0 |Zincin-like |Metalloproteases ("zincins"), catalytic domain |automated matches |automated matches |Clostridium botulinum [TaxId: 1491]
d1rn7a_ : (VAL62) (LYS121) [view usage] : d.17.1.2 |Cystatin-like |Cystatin/monellin |Cystatins |Cystatin D |Human (Homo sapiens) [TaxId: 9606]
d3s48a_ : (ASP181) (PRO227) [view usage] : b.1.28.1 |Immunoglobulin-like beta-sandwich |NEAT domain-like |NEAT domain |automated matches |Staphylococcus aureus [TaxId: 282459]
d2bwod_ : (ASP25) (CYS52) [view usage] : c.67.1.4 |PLP-dependent transferase-like |PLP-dependent transferases |GABA-aminotransferase-like |automated matches |Rhodobacter capsulatus [TaxId: 1061]
d3wjta_ : (ASP127) (LYS158) [view usage] : b.125.1.2 |LolA-like prokaryotic lipoproteins and lipoprotein localization factors |Prokaryotic lipoproteins and lipoprotein localization factors |Outer membrane lipoprotein receptor LolB |Outer membrane lipoprotein receptor LolB |Escherichia coli [TaxId: 562]
d2ihoa1 : (ILE7) (PRO39) [view usage] : b.42.2.1 |beta-Trefoil |Ricin B-like lectins |Ricin B-like |Agglutinin MOA, N-terminal domain |Fairy-ring mushroom (Marasmius oreades) [TaxId: 181124]
d1lnla2 : (ALA305) (LEU343) [view usage] : b.112.1.1 |C-terminal domain of mollusc hemocyanin |C-terminal domain of mollusc hemocyanin |C-terminal domain of mollusc hemocyanin |C-terminal domain of mollusc hemocyanin |Mollusca (Rapana thomasiana) [TaxId: 29165]
d3liza_ : (LYS0) (SER33) [view usage] : b.50.1.0 |Acid proteases |Acid proteases |automated matches |automated matches |Blattella germanica [TaxId: 6973]
d1cwva2 : (SER603) (THR644) [view usage] : b.1.14.1 |Immunoglobulin-like beta-sandwich |Invasin/intimin cell-adhesion fragments |Invasin/intimin cell-adhesion fragments |Invasin |Yersinia pseudotuberculosis [TaxId: 633]
d4jvzd_ : (GLY8) (ALA44) [view usage] : b.40.15.1 |OB-fold |EutN/CcmL-like |EutN/CcmL-like |Carbon dioxide concentrating mechanism protein CcmL |Thermosynechococcus elongatus [TaxId: 197221]
d2gtqa3 : (PRO442) (ASN485) [view usage] : b.1.30.1 |Immunoglobulin-like beta-sandwich |Zn aminopeptidase insert domain |Zn aminopeptidase insert domain |Aminopeptidase N (APN) domain 3 |Neisseria meningitidis [TaxId: 122586]
d1fsta_ : (VAL162) (LYS200) [view usage] : b.1.18.8 |Immunoglobulin-like beta-sandwich |E set domains |RhoGDI-like |Rho GDP-dissociation inhibitor 1, RhoGDI |Human (Homo sapiens) [TaxId: 9606]
d3wtwf_ : (ASP133) (VAL170) [view usage] : b.2.5.6 |Common fold of diphtheria toxin/transcription factors/cytochrome f |p53-like transcription factors |RUNT domain |Acute myeloid leukemia 1 protein (AML1), RUNT domain |Mouse (Mus musculus) [TaxId: 10090]
d3szkf_ : (ASP181) (PRO227) [view usage] : b.1.28.1 |Immunoglobulin-like beta-sandwich |NEAT domain-like |NEAT domain |automated matches |Staphylococcus aureus [TaxId: 196620]
d1nhca_ : (GLY322) (GLY352) [view usage] : b.80.1.3 |Single-stranded right-handed beta-helix |Pectin lyase-like |Galacturonase |Polygalacturonase |Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]
d2j72b_ : (GLU7) (PHE43) [view usage] : b.3.1.3 |Prealbumin-like |Starch-binding domain-like |PUD-like |Pullulanase PulA |Thermotoga maritima [TaxId: 2336]
d3heia_ : (ILE67) (ASP116) [view usage] : b.18.1.0 |Galactose-binding domain-like |Galactose-binding domain-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2yz8a_ : (GLN463) (TYR494) [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1p90a_ : (ILE106) (THR146) [view usage] : c.55.5.2 |Ribonuclease H-like motif |Nitrogenase accessory factor-like |Nitrogenase accessory factor |NafY core domain |Azotobacter vinelandii [TaxId: 354]
d3fncb_ : (PRO58) (LEU90) [view usage] : d.108.1.0 |Acyl-CoA N-acyltransferases (Nat) |Acyl-CoA N-acyltransferases (Nat) |automated matches |automated matches |Listeria innocua [TaxId: 272626]
d4jo5a_ : (LYS53) (PHE95) [view usage] : b.2.2.2 |Common fold of diphtheria toxin/transcription factors/cytochrome f |Carbohydrate-binding domain |Cellulose-binding domain family III |automated matches |Clostridium thermocellum [TaxId: 1094188]
d3b83d_ : (THR54) (THR88) [view usage] : b.1.2.0 |Immunoglobulin-like beta-sandwich |Fibronectin type III |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1h0ba_ : (ASP86) (GLY133) [view usage] : b.29.1.11 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Xylanase/endoglucanase 11/12 |Family 12 endo-1,4-beta-glucanase (cellulase) catalytic domain |Rhodothermus marinus [TaxId: 29549]
d3pwea1 : (GLU87) (PRO112) [view usage] : d.131.1.0 |DNA clamp |DNA clamp |automated matches |automated matches |Escherichia coli K-12 [TaxId: 83333]
d1o7va_ : (CYS106) (THR144) [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1) |Human (Homo sapiens) [TaxId: 9606]
d2dfxe_ : (ASP70) (GLY111) [view usage] : d.243.1.2 |Colicin D/E5 nuclease domain |Colicin D/E5 nuclease domain |Colicin E5 nuclease domain |automated matches |Escherichia coli [TaxId: 562]
d3wu1a_ : (ASP133) (VAL170) [view usage] : b.2.5.6 |Common fold of diphtheria toxin/transcription factors/cytochrome f |p53-like transcription factors |RUNT domain |Acute myeloid leukemia 1 protein (AML1), RUNT domain |Mouse (Mus musculus) [TaxId: 10090]
d3qi0f_ : (ALA146) (VAL190) [view usage] : b.69.5.2 |7-bladed beta-propeller |RCC1/BLIP-II |beta-lactamase inhibitor protein-II, BLIP-II |automated matches |Streptomyces exfoliatus [TaxId: 1905]
d1soxa1 : (ALA411) (ASP466) [view usage] : b.1.18.6 |Immunoglobulin-like beta-sandwich |E set domains |Molybdenum-containing oxidoreductases-like dimerisation domain |Sulfite oxidase, C-terminal domain |Chicken (Gallus gallus) [TaxId: 9031]
d3e6db1 : (MET52) (GLY79) [view usage] : b.82.3.2 |Double-stranded beta-helix |cAMP-binding domain-like |cAMP-binding domain |Chlorophenol reduction protein CprK |Desulfitobacterium hafniense [TaxId: 49338]
d3do7b2 : (TYR285) (PRO327) [view usage] : b.1.18.0 |Immunoglobulin-like beta-sandwich |E set domains |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1x0oa_ : (GLN70) (SER117) [view usage] : d.110.3.0 |Profilin-like |PYP-like sensor domain (PAS domain) |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1snfb_ : (GLY80) (GLU123) [view usage] : b.85.4.1 |beta-clip |dUTPase-like |dUTPase-like |Deoxyuridine 5'-triphosphate nucleotidohydrolase (dUTPase) |Mycobacterium tuberculosis, rv2697c [TaxId: 1773]
d2jn4a1 : (GLY36) (LEU66) [view usage] : b.173.1.1 |NifT/FixU barrel-like |NifT/FixU-like |NifT/FixU |Uncharacterized protein FixU (NifT) |Rhodopseudomonas palustris [TaxId: 1076]
d3kcwa_ : (GLY83) (ASN111) [view usage] : b.1.21.1 |Immunoglobulin-like beta-sandwich |Fungal immunomodulatory protein, FIP |Fungal immunomodulatory protein, FIP |automated matches |Ganoderma microsporum [TaxId: 34462]
d1y20a_ : (GLY26) (GLY65) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |N-methyl-D-aspartate receptor subunit 1 |Norway rat (Rattus norvegicus) [TaxId: 10116]
d2fhzb_ : (PRO63) (GLY103) [view usage] : d.243.1.2 |Colicin D/E5 nuclease domain |Colicin D/E5 nuclease domain |Colicin E5 nuclease domain |Colicin E5 |Escherichia coli [TaxId: 562]
d2qn0a_ : (ASN125) (SER155) [view usage] : d.92.1.0 |Zincin-like |Metalloproteases ("zincins"), catalytic domain |automated matches |automated matches |Clostridium botulinum [TaxId: 1491]
d1euoa_ : (LYS63) (VAL108) [view usage] : b.60.1.1 |Lipocalins |Lipocalins |Retinol binding protein-like |Nitrophorin 2 (prolixin-s) |Rhodnius prolixus [TaxId: 13249]
d2bwpb_ : (ASP25) (CYS52) [view usage] : c.67.1.4 |PLP-dependent transferase-like |PLP-dependent transferases |GABA-aminotransferase-like |automated matches |Rhodobacter capsulatus [TaxId: 1061]
d1jofa_ : (PRO1) (PRO37) [view usage] : b.69.10.1 |7-bladed beta-propeller |3-carboxy-cis,cis-mucoante lactonizing enzyme |3-carboxy-cis,cis-mucoante lactonizing enzyme |3-carboxy-cis,cis-mucoante lactonizing enzyme |Fungus (Neurospora crassa) [TaxId: 5141]
d1rkya2 : (ARG121) (PHE169) [view usage] : d.17.2.1 |Cystatin-like |Amine oxidase N-terminal region |Amine oxidase N-terminal region |Lysyl oxidase PplO, domains 1 and 2 |Yeast (Pichia pastoris) [TaxId: 4922]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
b.68, b.80, b.82, c.67, c.94, d.159, b.69, b.29, d.92, b.50, b.40, c.55, b.60, b.18, b.2, b.85, b.1, d.108, d.110, b.125,
b.42, d.17, d.131, b.61, b.3, b.112, d.243, b.173