Tableau information
Concept source: d1zboa1 amino acid (a.a.) range (SER40)(GLY90)
nSSEs in this Concept: 4
String of secondary struct.elems. (SSEs) defining this concept: EEEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(SER40) (VAL46) E1
(ARG64) (ARG70) E2
(ASP72) (MSE78) E3
(LEU81) (GLY90) E4
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 143.5° E2
E3 78.5° -80.5° E3
E4 -84.4° 114.2° 162.9°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±10.7° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1z8ra_ : (ILE113) (ALA135) [view usage] : b.47.1.0 |Trypsin-like serine proteases |Trypsin-like serine proteases |automated matches |automated matches |Human coxsackievirus b4 [TaxId: 12073]
d4c0sa2 : (VAL277) (ASN314) [view usage] : b.43.3.0 |Reductase/isomerase/elongation factor common domain |Translation proteins |automated matches |automated matches |Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
d1zuua1 : (TYR7) (ILE39) [view usage] : b.34.2.1 |SH3-like barrel |SH3-domain |SH3-domain |BZZ1 |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1orfa_ : (ARG62) (LEU108) [view usage] : b.47.1.2 |Trypsin-like serine proteases |Trypsin-like serine proteases |Eukaryotic proteases |Granzyme A |Human (Homo sapiens) [TaxId: 9606]
d2buda1 : (LYS381) (GLY418) [view usage] : b.34.13.3 |SH3-like barrel |Chromo domain-like |Chromo barrel domain |Putative histone acetyltransferase MOF |Fruit fly (Drosophila melanogaster) [TaxId: 7227]
d1jnwa_ : (MSE53) (TYR82) [view usage] : b.45.1.1 |Split barrel-like |FMN-binding split barrel |PNP-oxidase like |Pyridoxine 5'-phoshate oxidase (PNP oxidase) |Escherichia coli [TaxId: 562]
d1ylna1 : (ALA146) (PRO173) [view usage] : b.45.2.1 |Split barrel-like |PilZ domain-like |PilZ domain |Hypothetical protein VCA0042, C-terminal domain |Vibrio cholerae [TaxId: 666]
d2hu5b1 : (GLU276) (LEU302) [view usage] : b.69.7.2 |7-bladed beta-propeller |Peptidase/esterase 'gauge' domain |Acylamino-acid-releasing enzyme, N-terminal donain |Acylamino-acid-releasing enzyme, N-terminal donain |Aeropyrum pernix [TaxId: 56636]
d3d5by1 : (THR12) (VAL39) [view usage] : b.34.5.1 |SH3-like barrel |Translation proteins SH3-like domain |Ribosomal proteins L24p and L21e |Ribosomal proteins L24 (L24p) |Thermus thermophilus [TaxId: 274]
d4v19y_ : (LYS61) (GLU89) [view usage] : i.1.1.2 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Large subunit |Eukaryotic, mitochondrial (54S or 39S subunit) |Pig (Sus scrofa) [TaxId: 9823]
d3nsga_ : (ARG208) (MSE248) [view usage] : f.4.3.1 |Transmembrane beta-barrels |Porins |Porin |automated matches |Salmonella enterica [TaxId: 527001]
d1rqpa1 : (ALA194) (ASN219) [view usage] : b.141.1.1 |Bacterial fluorinating enzyme, C-terminal domain |Bacterial fluorinating enzyme, C-terminal domain |Bacterial fluorinating enzyme, C-terminal domain |5'-fluoro-5'-deoxyadenosine synthase |Streptomyces cattleya [TaxId: 29303]
d2oj6a1 : (GLU419) (PRO451) [view usage] : b.21.1.2 |Virus attachment protein globular domain |Virus attachment protein globular domain |Reovirus attachment protein sigma 1 head domain |automated matches |Reovirus sp. [TaxId: 10891]
d2f1la2 : (ARG41) (LEU69) [view usage] : b.43.3.4 |Reductase/isomerase/elongation factor common domain |Translation proteins |RimM N-terminal domain-like |16S rRNA processing protein RimM, N-terminal domain |Pseudomonas aeruginosa [TaxId: 287]
d2aypa_ : (ALA2) (VAL30) [view usage] : d.144.1.7 |Protein kinase-like (PK-like) |Protein kinase-like (PK-like) |Protein kinases, catalytic subunit |Cell cycle checkpoint kinase chk1 |Human (Homo sapiens) [TaxId: 9606]
d1qksa2 : (ALA378) (HIS408) [view usage] : b.70.2.1 |8-bladed beta-propeller |C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase |C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase |C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase |Paracoccus denitrificans [TaxId: 266]
d2anea1 : (LYS48) (GLN96) [view usage] : b.122.1.10 |PUA domain-like |PUA domain-like |LON domain-like |ATP-dependent protease La (Lon), N-terminal domain |Escherichia coli [TaxId: 562]
d1whka_ : (SER17) (ARG49) [view usage] : b.34.10.1 |SH3-like barrel |Cap-Gly domain |Cap-Gly domain |Restin-like protein 2, Rsnl2 |Mouse (Mus musculus) [TaxId: 10090]
d1no3a2 : (SER57) (GLU104) [view usage] : b.12.1.1 |Lipase/lipooxygenase domain (PLAT/LH2 domain) |Lipase/lipooxygenase domain (PLAT/LH2 domain) |Lipoxigenase N-terminal domain |Plant lipoxigenase |Soybean (Glycine max), isozyme L3 [TaxId: 3847]
d3o4gb1 : (GLU276) (LEU302) [view usage] : b.69.7.2 |7-bladed beta-propeller |Peptidase/esterase 'gauge' domain |Acylamino-acid-releasing enzyme, N-terminal donain |Acylamino-acid-releasing enzyme, N-terminal donain |Aeropyrum pernix [TaxId: 56636]
d2oj6c2 : (VAL399) (GLY432) [view usage] : b.21.1.2 |Virus attachment protein globular domain |Virus attachment protein globular domain |Reovirus attachment protein sigma 1 head domain |automated matches |Reovirus sp. [TaxId: 10891]
d2chla_ : (VAL36) (TYR64) [view usage] : d.144.1.7 |Protein kinase-like (PK-like) |Protein kinase-like (PK-like) |Protein kinases, catalytic subunit |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3sj8a_ : (GLY149) (ARG176) [view usage] : b.47.1.4 |Trypsin-like serine proteases |Trypsin-like serine proteases |Viral cysteine protease of trypsin fold |3C cysteine protease (picornain 3C) |Human coxsackievirus a16 [TaxId: 31704]
d3a5zb1 : (GLY12) (LEU47) [view usage] : b.34.5.0 |SH3-like barrel |Translation proteins SH3-like domain |automated matches |automated matches |Escherichia coli [TaxId: 562]
d4gptb_ : (LYS92) (ARG128) [view usage] : b.55.1.0 |PH domain-like barrel |PH domain-like |automated matches |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d2ew0a1 : (HIS8) (ASN43) [view usage] : d.310.1.1 |VC0467-like |VC0467-like |VC0467-like |Hypothetical protein ACIAD0353 |Acinetobacter sp. ADP1 [TaxId: 62977]
d1n12a_ : (GLY107) (TYR148) [view usage] : b.2.3.2 |Common fold of diphtheria toxin/transcription factors/cytochrome f |Bacterial adhesins |Pilus subunits |PapE pilus subunit |Escherichia coli [TaxId: 562]
d3wx5a_ : (LEU163) (ARG202) [view usage] : b.29.1.11 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Xylanase/endoglucanase 11/12 |automated matches |Uncultured bacterium [TaxId: 77133]
d1vsas1 : (LYS26) (PHE60) [view usage] : b.34.5.1 |SH3-like barrel |Translation proteins SH3-like domain |Ribosomal proteins L24p and L21e |Ribosomal proteins L24 (L24p) |Thermus thermophilus [TaxId: 274]
d4b6ga_ : (ASN-6) (TRP17) [view usage] : c.69.1.0 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |automated matches |automated matches |Neisseria meningitidis [TaxId: 122586]
d2y8fa_ : (LYS339) (THR379) [view usage] : b.55.1.3 |PH domain-like barrel |PH domain-like |Ran-binding domain |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2kgta_ : (PRO11) (ASP51) [view usage] : b.34.2.0 |SH3-like barrel |SH3-domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2rdea1 : (VAL185) (ASN223) [view usage] : b.45.2.1 |Split barrel-like |PilZ domain-like |PilZ domain |Hypothetical protein VCA0042, C-terminal domain |Vibrio cholerae O395 [TaxId: 345073]
d2sfaa_ : (GLU5) (ALA33) [view usage] : b.47.1.1 |Trypsin-like serine proteases |Trypsin-like serine proteases |Prokaryotic proteases |Serine proteinase |Streptomyces fradiae [TaxId: 1906]
d3j39y_ : (VAL67) (HIS100) [view usage] : i.1.1.1 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Ribosome complexes |Eukaryotic, cytoplasmic (80S ribosome functional complex) |Drosophila melanogaster [TaxId: 7227]
d1q3xa1 : (ASP496) (LYS537) [view usage] : b.47.1.2 |Trypsin-like serine proteases |Trypsin-like serine proteases |Eukaryotic proteases |Mannan-binding lectin serine protease 2 (MASP-2), catalytic domain |Human (Homo sapiens) [TaxId: 9606]
d1jnpa_ : (ASP80) (LEU108) [view usage] : b.63.1.1 |Oncogene products |Oncogene products |Oncogene products |p14-TCL1 |Mouse (Mus musculus) [TaxId: 10090]
d2joya1 : (ARG8) (PRO38) [view usage] : b.34.5.7 |SH3-like barrel |Translation proteins SH3-like domain |Ribosomal protein L14e |Ribosomal protein L14e |Sulfolobus solfataricus [TaxId: 2287]
d3h9na1 : (PRO42) (LYS71) [view usage] : b.43.3.0 |Reductase/isomerase/elongation factor common domain |Translation proteins |automated matches |automated matches |Haemophilus influenzae [TaxId: 727]
d1zboa1 : (SER40) (GLY90) [view usage] : b.122.1.10 |PUA domain-like |PUA domain-like |LON domain-like |Hypothetical protein BPP1347 |Bordetella parapertussis [TaxId: 519]
d3u5em_ : (ARG19) (GLY48) [view usage] : i.1.1.1 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Ribosome complexes |Eukaryotic, cytoplasmic (80S ribosome functional complex) |Saccharomyces cerevisiae [TaxId: 559292]
d1ve6a1 : (GLU276) (LEU302) [view usage] : b.69.7.2 |7-bladed beta-propeller |Peptidase/esterase 'gauge' domain |Acylamino-acid-releasing enzyme, N-terminal donain |Acylamino-acid-releasing enzyme, N-terminal donain |Aeropyrum pernix [TaxId: 56636]
d4dqna_ : (VAL278) (TYR305) [view usage] : e.17.1.0 |D-aminoacid aminotransferase-like PLP-dependent enzymes |D-aminoacid aminotransferase-like PLP-dependent enzymes |automated matches |automated matches |Streptococcus mutans [TaxId: 1309]
d2rdea2 : (PHE89) (SER125) [view usage] : b.45.2.2 |Split barrel-like |PilZ domain-like |PilZ domain-associated domain |Hypothetical protein VCA0042, N-terminal domain |Vibrio cholerae O395 [TaxId: 345073]
d4l6ea_ : (LYS2939) (ARG2975) [view usage] : b.55.1.0 |PH domain-like barrel |PH domain-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2djqa_ : (PRO8) (GLY45) [view usage] : b.34.2.0 |SH3-like barrel |SH3-domain |automated matches |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d3uyya_ : (SER297) (TYR324) [view usage] : e.17.1.0 |D-aminoacid aminotransferase-like PLP-dependent enzymes |D-aminoacid aminotransferase-like PLP-dependent enzymes |automated matches |automated matches |Deinococcus radiodurans [TaxId: 1299]
d2aneb_ : (LYS48) (GLN96) [view usage] : b.122.1.10 |PUA domain-like |PUA domain-like |LON domain-like |ATP-dependent protease La (Lon), N-terminal domain |Escherichia coli [TaxId: 562]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
b.70, c.69, b.69, i.1, b.29, b.47, f.4, d.144, b.2, e.17, b.122, b.45, b.21, b.55, b.34, b.43, b.12, d.310, b.63, b.141