Tableau information
Concept source: d2bera3 amino acid (a.a.) range (GLY219)(GLU265)
nSSEs in this Concept: 4
String of secondary struct.elems. (SSEs) defining this concept: EEEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(GLY219) (ALA231) E1
(GLN235) (SER241) E2
(ARG246) (ALA250) E3
(GLU260) (GLU265) E4
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 146.3° E2
E3 -40.4° 159.8° E3
E4 146.9° -50.3° 113.3°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±13.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d2xzm1_ : (ARG28) (ARG68) [view usage] : i.1.1.3 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Small subunit |Eukaryotic, cytoplasmic (40S subunit) |Tetrahymena thermophila [TaxId: 5911]
d1h95a_ : (GLY11) (GLU60) [view usage] : b.40.4.5 |OB-fold |Nucleic acid-binding proteins |Cold shock DNA-binding domain-like |Y-box protein 1 cold shock domain (YB1-CSD) |Human (Homo sapiens) [TaxId: 9606]
d1wkta_ : (LEU5) (GLY41) [view usage] : b.11.1.2 |gamma-Crystallin-like |gamma-Crystallin-like |Yeast killer toxin |Yeast killer toxin |Williopsis mrakii [TaxId: 4963]
d4iosb_ : (ASN117) (ASP163) [view usage] : b.21.1.3 |Virus attachment protein globular domain |Virus attachment protein globular domain |Lactophage receptor-binding protein head domain |automated matches |Lactococcus phage [TaxId: 35345]
d1nuia1 : (GLY103) (GLY143) [view usage] : e.13.1.2 |DNA primase core |DNA primase core |Primase fragment of primase-helicase protein |Primase fragment of primase-helicase protein |Bacteriophage T7 [TaxId: 10760]
d2arca_ : (ASP70) (ASP123) [view usage] : b.82.4.1 |Double-stranded beta-helix |Regulatory protein AraC |Regulatory protein AraC |Regulatory protein AraC |Escherichia coli [TaxId: 562]
d1s72a2 : (VAL37) (GLY83) [view usage] : b.40.4.5 |OB-fold |Nucleic acid-binding proteins |Cold shock DNA-binding domain-like |N-terminal domain of ribosomal protein L2 |Haloarcula marismortui [TaxId: 2238]
d1y4wa2 : (GLN57) (SER103) [view usage] : b.67.2.3 |5-bladed beta-propeller |Arabinanase/levansucrase/invertase |Glycosyl hydrolases family 32 N-terminal domain |Exo-inulinase |Aspergillus awamori [TaxId: 105351]
d2f0ca1 : (ASN117) (ASP163) [view usage] : b.21.1.3 |Virus attachment protein globular domain |Virus attachment protein globular domain |Lactophage receptor-binding protein head domain |Baseplate protein (bpp), C-terminal domain |Lactococcus phage tp901-1 [TaxId: 35345]
d1m4va2 : (LYS163) (ILE203) [view usage] : d.15.6.1 |beta-Grasp (ubiquitin-like) |Superantigen toxins, C-terminal domain |Superantigen toxins, C-terminal domain |Superantigen-like protein SET3 |Staphylococcus aureus [TaxId: 1280]
d3c2ua1 : (MET196) (THR254) [view usage] : b.67.2.0 |5-bladed beta-propeller |Arabinanase/levansucrase/invertase |automated matches |automated matches |Selenomonas ruminantium [TaxId: 971]
d8i1ba_ : (LYS109) (SER150) [view usage] : b.42.1.2 |beta-Trefoil |Cytokine |Interleukin-1 (IL-1) |Interleukin-1beta |Mouse (Mus musculus) [TaxId: 10090]
d2qyib_ : (VAL719) (LYS777) [view usage] : b.42.4.1 |beta-Trefoil |STI-like |Kunitz (STI) inhibitors |chymotrypsin inhibitor WCI |Winged bean (Psophocarpus tetragonolobus) [TaxId: 3891]
d3bukc1 : (CYS16) (VAL48) [view usage] : g.24.1.1 |TNF receptor-like |TNF receptor-like |TNF receptor-like |Low affinity neurotrophin receptor p75NTR |Norway rat (Rattus norvegicus) [TaxId: 10116]
d1snza_ : (HIS244) (THR282) [view usage] : b.30.5.4 |Supersandwich |Galactose mutarotase-like |Aldose 1-epimerase (mutarotase) |Galactose mutarotase |Human (Homo sapiens) [TaxId: 9606]
d1vdca2 : (ASN201) (ILE243) [view usage] : c.3.1.5 |FAD/NAD(P)-binding domain |FAD/NAD(P)-binding domain |FAD/NAD-linked reductases, N-terminal and central domains |Thioredoxin reductase |Thale cress (Arabidopsis thaliana) [TaxId: 3702]
d3d3ra1 : (MSE1) (ILE49) [view usage] : b.40.14.1 |OB-fold |HupF/HypC-like |HupF/HypC-like |Hydrogenase expression/formation protein HypC |Shewanella oneidensis [TaxId: 70863]
d4gk1f_ : (THR217) (LEU285) [view usage] : d.169.1.0 |C-type lectin-like |C-type lectin-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d4iosa_ : (ARG118) (ASP163) [view usage] : b.21.1.3 |Virus attachment protein globular domain |Virus attachment protein globular domain |Lactophage receptor-binding protein head domain |automated matches |Lactococcus phage [TaxId: 35345]
d3izby_ : (THR8) (GLU58) [view usage] : i.1.1.3 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Small subunit |Eukaryotic, cytoplasmic (40S subunit) |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1onfa2 : (VAL240) (VAL270) [view usage] : c.3.1.5 |FAD/NAD(P)-binding domain |FAD/NAD(P)-binding domain |FAD/NAD-linked reductases, N-terminal and central domains |Glutathione reductase |Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
d1mbma_ : (GLY91) (GLY127) [view usage] : b.47.1.3 |Trypsin-like serine proteases |Trypsin-like serine proteases |Viral proteases |NSP4 proteinase |Equine arteritis virus, EAV [TaxId: 11047]
d1dyma_ : (GLY190) (GLU224) [view usage] : b.29.1.10 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Glycosyl hydrolase family 7 catalytic core |Cellobiohydrolase I (cellulase, Endoglucanase I, CBH1) |Humicola insolens, Cel7b [TaxId: 34413]
d3scha2 : (ARG90) (SER136) [view usage] : b.82.1.10 |Double-stranded beta-helix |RmlC-like cupins |TM1459-like |Hydroxypropylphosphonic acid epoxidase Fom4, C-terminal domain |Streptomyces wedmorensis [TaxId: 43759]
d1vava_ : (LEU116) (GLY163) [view usage] : b.29.1.18 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Alginate lyase |Alginate lyase PA1167 |Pseudomonas aeruginosa [TaxId: 287]
d1yl3d2 : (ILE73) (PRO119) [view usage] : b.40.4.5 |OB-fold |Nucleic acid-binding proteins |Cold shock DNA-binding domain-like |N-terminal domain of ribosomal protein L2 |Thermus thermophilus [TaxId: 274]
d4tlpa_ : (VAL119) (LYS177) [view usage] : b.42.4.1 |beta-Trefoil |STI-like |Kunitz (STI) inhibitors |automated matches |Winged bean (Psophocarpus tetragonolobus) [TaxId: 3891]
d1zz8a2 : (ARG90) (SER136) [view usage] : b.82.1.10 |Double-stranded beta-helix |RmlC-like cupins |TM1459-like |Hydroxypropylphosphonic acid epoxidase Fom4, C-terminal domain |Streptomyces wedmorensis [TaxId: 43759]
d3voma_ : (PRO138) (ASP176) [view usage] : c.67.1.0 |PLP-dependent transferase-like |PLP-dependent transferases |automated matches |automated matches |Mycobacterium tuberculosis [TaxId: 83332]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
b.68, b.82, c.67, i.1, b.29, b.67, b.30, b.47, b.40, d.169, b.42, e.13, b.21, c.3, b.11, d.15, g.24