Tableau information
Concept source: d4h6ba_ amino acid (a.a.) range (ASN83)(THR109)
nSSEs in this Concept: 4
String of secondary struct.elems. (SSEs) defining this concept: EEEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(ASN83) (GLU88) E1
(LEU90) (PHE95) E2
(GLY99) (GLY105) E3
(GLY105) (THR109) E4
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 -83.2° E2
E3 -117.2° 155.4° E3
E4 164.5° 89.2° -73.9°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±9.6° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d2x4mb_ : (GLN135) (GLY178) [view usage] : f.4.4.0 |Transmembrane beta-barrels |OMPT-like |automated matches |automated matches |Yersinia pestis [TaxId: 632]
d2q17b_ : (GLY25) (THR65) [view usage] : d.169.1.0 |C-type lectin-like |C-type lectin-like |automated matches |automated matches |Streptomyces coelicolor [TaxId: 100226]
d3zpya_ : (TYR414) (ASN446) [view usage] : b.29.1.0 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |automated matches |automated matches |Zobellia galactanivorans [TaxId: 63186]
d3gc2a1 : (ARG2) (ASP36) [view usage] : d.54.1.0 |Enolase N-terminal domain-like |Enolase N-terminal domain-like |automated matches |automated matches |Salmonella typhimurium [TaxId: 602]
d2x4ma_ : (GLN135) (ILE185) [view usage] : f.4.4.0 |Transmembrane beta-barrels |OMPT-like |automated matches |automated matches |Yersinia pestis [TaxId: 632]
d3abza4 : (LYS809) (TRP842) [view usage] : b.1.31.1 |Immunoglobulin-like beta-sandwich |Fibronectin III-like |Fibronectin III-like |Beta-glucosidase C-terminal domain |Kluyveromyces marxianus [TaxId: 4911]
d1rd6a1 : (THR36) (ASN70) [view usage] : b.1.18.2 |Immunoglobulin-like beta-sandwich |E set domains |E-set domains of sugar-utilizing enzymes |Chitinase A, N-terminal domain N |Serratia marcescens [TaxId: 615]
d2dxta1 : (ASP40) (SER67) [view usage] : d.104.1.2 |Class II aaRS and biotin synthetases |Class II aaRS and biotin synthetases |Biotin holoenzyme synthetase |Biotin--[acetyl-CoA-carboxylase] ligase catalytic domain |Pyrococcus horikoshii [TaxId: 53953]
d1wdaa3 : (ASN409) (GLY431) [view usage] : d.126.1.5 |Pentein, beta/alpha-propeller |Pentein |Peptidylarginine deiminase Pad4, catalytic C-terminal domain |Peptidylarginine deiminase Pad4, catalytic C-terminal domain |Human (Homo sapiens) [TaxId: 9606]
d1kmoa_ : (LEU699) (PHE741) [view usage] : f.4.3.3 |Transmembrane beta-barrels |Porins |Ligand-gated protein channel |Outer membrane transporter FecA |Escherichia coli [TaxId: 562]
d1rm6a1 : (ALA70) (ILE111) [view usage] : d.41.1.1 |alpha/beta-Hammerhead |CO dehydrogenase molybdoprotein N-domain-like |CO dehydrogenase molybdoprotein N-domain-like |4-hydroxybenzoyl-CoA reductase alpha subunit HrcA, N-terminal domain |Thauera aromatica [TaxId: 59405]
d1smpa2 : (GLN133) (ASN155) [view usage] : d.92.1.6 |Zincin-like |Metalloproteases ("zincins"), catalytic domain |Serralysin-like metalloprotease, catalytic (N-terminal) domain |Metalloprotease |Serratia marcescens [TaxId: 615]
d3zpyb_ : (TYR414) (ASN446) [view usage] : b.29.1.0 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |automated matches |automated matches |Zobellia galactanivorans [TaxId: 63186]
d1ctna1 : (THR36) (ASN70) [view usage] : b.1.18.2 |Immunoglobulin-like beta-sandwich |E set domains |E-set domains of sugar-utilizing enzymes |Chitinase A, N-terminal domain N |Serratia marcescens [TaxId: 615]
d4h6aa_ : (ASP84) (THR108) [view usage] : b.159.1.0 |AOC barrel-like |Allene oxide cyclase-like |automated matches |automated matches |Physcomitrella patens [TaxId: 145481]
d1ifra_ : (GLU460) (LYS490) [view usage] : b.1.16.1 |Immunoglobulin-like beta-sandwich |Lamin A/C globular tail domain |Lamin A/C globular tail domain |Lamin A/C globular tail domain |Human (Homo sapiens) [TaxId: 9606]
d2rdea1 : (GLU138) (ARG165) [view usage] : b.45.2.1 |Split barrel-like |PilZ domain-like |PilZ domain |Hypothetical protein VCA0042, C-terminal domain |Vibrio cholerae O395 [TaxId: 345073]
d3iaid_ : (VAL66) (GLY98) [view usage] : b.74.1.0 |Carbonic anhydrase |Carbonic anhydrase |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1z8ka1 : (LYS86) (THR112) [view usage] : b.159.1.1 |AOC barrel-like |Allene oxide cyclase-like |Allene oxide cyclase-like |Allene oxide cyclase, AOC |Thale cress (Arabidopsis thaliana), chloroplast AOC2 [TaxId: 3702]
d2cela_ : (ASN89) (ALA112) [view usage] : b.29.1.10 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Glycosyl hydrolase family 7 catalytic core |Cellobiohydrolase I (cellulase, Endoglucanase I, CBH1) |Trichoderma reesei, Cel7A [TaxId: 51453]
d1lsha2 : (GLY224) (ALA266) [view usage] : f.7.1.1 |Lipovitellin-phosvitin complex; beta-sheet shell regions |Lipovitellin-phosvitin complex; beta-sheet shell regions |Lipovitellin-phosvitin complex; beta-sheet shell regions |Lipovitellin-phosvitin complex; beta-sheet shell regions |Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]
d1wpya2 : (ASP40) (SER67) [view usage] : d.104.1.2 |Class II aaRS and biotin synthetases |Class II aaRS and biotin synthetases |Biotin holoenzyme synthetase |Biotin--[acetyl-CoA-carboxylase] ligase catalytic domain |Pyrococcus horikoshii [TaxId: 53953]
d4cela_ : (ASN89) (ALA112) [view usage] : b.29.1.10 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Glycosyl hydrolase family 7 catalytic core |Cellobiohydrolase I (cellulase, Endoglucanase I, CBH1) |Trichoderma reesei, Cel7A [TaxId: 51453]
d2b4cg1 : (SER115) (ILE213) [view usage] : d.172.1.1 |gp120 core |gp120 core |gp120 core |gp120 core |Human immunodeficiency virus type 1 [TaxId: 11676]
d4h6ba_ : (ASN83) (THR109) [view usage] : b.159.1.1 |AOC barrel-like |Allene oxide cyclase-like |Allene oxide cyclase-like |automated matches |Physcomitrella patens [TaxId: 3218]
d1vava_ : (TYR193) (SER221) [view usage] : b.29.1.18 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Alginate lyase |Alginate lyase PA1167 |Pseudomonas aeruginosa [TaxId: 287]
d2akka1 : (ASP17) (GLY42) [view usage] : b.34.11.2 |SH3-like barrel |Prokaryotic SH3-related domain |PhnA-like |Hypothetical protein RPA4501 |Rhodopseudomonas palustris [TaxId: 1076]
d2pvgb_ : (ASP5) (GLU34) [view usage] : b.34.4.3 |SH3-like barrel |Electron transport accessory proteins |Ferredoxin thioredoxin reductase (FTR), alpha (variable) chain |Ferredoxin thioredoxin reductase (FTR), alpha (variable) chain |Synechocystis sp. [TaxId: 1143]
d1yu0a1 : (ALA73) (ALA102) [view usage] : b.163.1.1 |Pseudo beta-prism I |Bacteriophage trimeric proteins domain |Mtd domain-like |Major tropism determinant (Mtd), N-terminal domain |Bordetella phage bpp-1 [TaxId: 194699]
d1ahsa_ : (VAL182) (VAL212) [view usage] : b.19.1.1 |Viral protein domain |Viral protein domain |Top domain of virus capsid protein |RDV p8, central (top) domain |African horse sickness virus [TaxId: 40050]
d3iaib_ : (VAL66) (GLY98) [view usage] : b.74.1.0 |Carbonic anhydrase |Carbonic anhydrase |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1a3yb_ : (GLY14) (ASP46) [view usage] : b.60.1.1 |Lipocalins |Lipocalins |Retinol binding protein-like |Odorant-binding protein |Pig (Sus scrofa) [TaxId: 9823]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
b.19, b.29, b.74, d.92, f.4, d.104, b.60, d.169, b.1, d.126, b.45, d.41, b.34, d.54, f.7, b.159, b.163, d.172