Tableau information
Concept source: d1aeca_ amino acid (a.a.) range (HIS162)(LEU197)
nSSEs in this Concept: 4
String of secondary struct.elems. (SSEs) defining this concept: EEEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(HIS162) (GLY168) E1
(GLY168) (GLY173) E2
(ASP176) (LYS181) E3
(TYR193) (LEU197) E4
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 72.3° E2
E3 118.4° 137.6° E3
E4 -81.8° -57.6° 156.1°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±11.8° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d3bgtd_ : (PRO51) (LEU95) [view usage] : d.347.1.0 |Acetoacetate decarboxylase-like |Acetoacetate decarboxylase-like |automated matches |automated matches |Chromobacterium violaceum [TaxId: 536]
d2l89a_ : (PRO67) (TRP102) [view usage] : b.34.9.0 |SH3-like barrel |Tudor/PWWP/MBT |automated matches |automated matches |Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
d1yx2b2 : (VAL286) (THR314) [view usage] : b.44.2.1 |Elongation factor/aminomethyltransferase common domain |Aminomethyltransferase beta-barrel domain |Aminomethyltransferase beta-barrel domain |Glycine cleavage system T protein, GcvT |Bacillus subtilis [TaxId: 1423]
d1pxva_ : (PRO336) (ASP370) [view usage] : d.3.1.1 |Cysteine proteinases |Cysteine proteinases |Papain-like |Staphopain SspB |Staphylococcus aureus [TaxId: 1280]
d2g3pa1 : (ASN15) (GLY42) [view usage] : b.37.1.1 |N-terminal domains of the minor coat protein g3p |N-terminal domains of the minor coat protein g3p |N-terminal domains of the minor coat protein g3p |N-terminal domains of the minor coat protein g3p |Bacteriophage fd [TaxId: 10864]
d4dh2c_ : (ILE60) (ASP95) [view usage] : b.2.2.0 |Common fold of diphtheria toxin/transcription factors/cytochrome f |Carbohydrate-binding domain |automated matches |automated matches |Clostridium thermocellum [TaxId: 203119]
d1ia9b_ : (LEU1603) (PHE1648) [view usage] : d.144.1.5 |Protein kinase-like (PK-like) |Protein kinase-like (PK-like) |MHCK/EF2 kinase |Trp Ca-channel kinase domain |Mouse (Mus musculus) [TaxId: 10090]
d1sjga_ : (ASP83) (LYS109) [view usage] : b.33.1.1 |ISP domain |ISP domain |Rieske iron-sulfur protein (ISP) |Toluene-4-monooxygenase system protein C, TmoC |Pseudomonas mendocina [TaxId: 300]
d1e8tb_ : (SER521) (ASN568) [view usage] : b.68.1.1 |6-bladed beta-propeller |Sialidases |Sialidases (neuraminidases) |Paramyxovirus hemagglutinin-neuraminidase head domain |Newcastle disease virus [TaxId: 11176]
d1wgoa_ : (PRO24) (LEU68) [view usage] : b.1.3.1 |Immunoglobulin-like beta-sandwich |PKD domain |PKD domain |VPS10 domain-containing receptor SorCS2 |Human (Homo sapiens) [TaxId: 9606]
d2j0ma2 : (LYS255) (ASP285) [view usage] : b.55.1.0 |PH domain-like barrel |PH domain-like |automated matches |automated matches |Chicken (Gallus gallus) [TaxId: 9031]
d1d5ta1 : (ASN252) (LYS278) [view usage] : c.3.1.3 |FAD/NAD(P)-binding domain |FAD/NAD(P)-binding domain |GDI-like N domain |Guanine nucleotide dissociation inhibitor, GDI |Cow (Bos taurus) [TaxId: 9913]
d1ef7a_ : (HIS180) (VAL215) [view usage] : d.3.1.1 |Cysteine proteinases |Cysteine proteinases |Papain-like |(Pro)cathepsin X |Human (Homo sapiens) [TaxId: 9606]
d1a63a2 : (ASP48) (SER82) [view usage] : b.40.4.5 |OB-fold |Nucleic acid-binding proteins |Cold shock DNA-binding domain-like |Rho termination factor, RNA-binding domain |Escherichia coli [TaxId: 562]
d1pv4a2 : (ASP48) (PRO83) [view usage] : b.40.4.5 |OB-fold |Nucleic acid-binding proteins |Cold shock DNA-binding domain-like |Rho termination factor, RNA-binding domain |Escherichia coli [TaxId: 562]
d1yhba_ : (MET1) (GLY52) [view usage] : b.40.4.7 |OB-fold |Nucleic acid-binding proteins |Phage ssDNA-binding proteins |Gene V protein |Enterobacteria phage M13, including coliphage f1 [TaxId: 10870]
d1qp2a_ : (ASP20) (ALA61) [view usage] : b.34.4.2 |SH3-like barrel |Electron transport accessory proteins |Photosystem I accessory protein E (PsaE) |Photosystem I accessory protein E (PsaE) |Nostoc sp., strain pcc8009 [TaxId: 1180]
d1df3a_ : (ARG39) (GLU75) [view usage] : b.60.1.1 |Lipocalins |Lipocalins |Retinol binding protein-like |Major urinary protein/alpha-2u-globulin |Mouse (Mus musculus) [TaxId: 10090]
d2a8va2 : (ASP48) (SER82) [view usage] : b.40.4.5 |OB-fold |Nucleic acid-binding proteins |Cold shock DNA-binding domain-like |Rho termination factor, RNA-binding domain |Escherichia coli [TaxId: 562]
d3bh3a_ : (PRO51) (LEU95) [view usage] : d.347.1.0 |Acetoacetate decarboxylase-like |Acetoacetate decarboxylase-like |automated matches |automated matches |Chromobacterium violaceum [TaxId: 243365]
d2clta1 : (LYS262) (ASN287) [view usage] : b.66.1.1 |4-bladed beta-propeller |Hemopexin-like domain |Hemopexin-like domain |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1ah9a_ : (GLY28) (PHE68) [view usage] : b.40.4.5 |OB-fold |Nucleic acid-binding proteins |Cold shock DNA-binding domain-like |Translational initiation factor 1, IF1 |Escherichia coli [TaxId: 562]
d1vs6c2 : (PRO74) (TYR102) [view usage] : b.40.4.5 |OB-fold |Nucleic acid-binding proteins |Cold shock DNA-binding domain-like |N-terminal domain of ribosomal protein L2 |Escherichia coli [TaxId: 562]
d2bz0b_ : (GLN2) (GLY38) [view usage] : c.144.1.1 |RibA-like |RibA-like |RibA-like |GTP cyclohydrolase II, RibA |Escherichia coli [TaxId: 562]
d3bh3d_ : (PRO51) (LEU95) [view usage] : d.347.1.0 |Acetoacetate decarboxylase-like |Acetoacetate decarboxylase-like |automated matches |automated matches |Chromobacterium violaceum [TaxId: 243365]
d1jnpa_ : (PRO12) (PRO36) [view usage] : b.63.1.1 |Oncogene products |Oncogene products |Oncogene products |p14-TCL1 |Mouse (Mus musculus) [TaxId: 10090]
d1y4ha1 : (PRO336) (ASP370) [view usage] : d.3.1.1 |Cysteine proteinases |Cysteine proteinases |Papain-like |Staphopain SspB |Staphylococcus aureus [TaxId: 1280]
d1zdva1 : (GLY31) (THR65) [view usage] : b.167.1.1 |FimD N-terminal domain-like |FimD N-terminal domain-like |Usher N-domain |Outer membrane usher protein FimD |Escherichia coli [TaxId: 562]
d1nm7a_ : (ASP332) (PRO363) [view usage] : b.34.2.1 |SH3-like barrel |SH3-domain |SH3-domain |Peroxisomal membrane protein Pex13p |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1ss4a_ : (GLY114) (GLY148) [view usage] : d.32.1.6 |Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase |Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase |Hypothetical protein BC1747 |Hypothetical protein BC1747 |Bacillus cereus (strain ATCC 14579 / DSM 31) [TaxId: 226900]
d4iuga2 : (ALA398) (HIS432) [view usage] : b.71.1.0 |Glycosyl hydrolase domain |Glycosyl hydrolase domain |automated matches |automated matches |Fungus (Aspergillus oryzae) [TaxId: 5062]
d4geza_ : (LYS385) (GLY430) [view usage] : b.68.1.0 |6-bladed beta-propeller |Sialidases |automated matches |automated matches |Influenza A virus [TaxId: 11320]
d1k8fa_ : (ASP383) (LYS412) [view usage] : b.80.5.1 |Single-stranded right-handed beta-helix |C-terminal domain of adenylylcyclase associated protein |C-terminal domain of adenylylcyclase associated protein |C-terminal domain of adenylylcyclase associated protein |Human (Homo sapiens) [TaxId: 9606]
d1hyob1 : (GLN515) (SER544) [view usage] : b.34.8.1 |SH3-like barrel |Fumarylacetoacetate hydrolase, FAH, N-terminal domain |Fumarylacetoacetate hydrolase, FAH, N-terminal domain |Fumarylacetoacetate hydrolase, FAH, N-terminal domain |Mouse (Mus musculus) [TaxId: 10090]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
b.68, b.80, d.144, b.40, b.60, d.3, b.2, d.32, b.1, d.347, b.55, b.34, c.3, b.71, b.37, b.33, b.66, b.44, c.144, b.63,
b.167