Tableau information
Concept source: d1ay2a_ amino acid (a.a.) range (VAL87)(ARG127)
nSSEs in this Concept: 4
String of secondary struct.elems. (SSEs) defining this concept: EEEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(VAL87) (LEU93) E1
(GLY103) (ARG112) E2
(GLY115) (CYS121) E3
(GLN123) (ARG127) E4
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 165.4° E2
E3 -25.5° 158.5° E3
E4 -139.5° 49.8° -143.3°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±13.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1wufa2 : (MET1001) (LEU1061) [view usage] : d.54.1.1 |Enolase N-terminal domain-like |Enolase N-terminal domain-like |Enolase N-terminal domain-like |N-acylamino acid racemase |Listeria innocua [TaxId: 1642]
d1clea_ : (ALA1) (GLY50) [view usage] : c.69.1.17 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Fungal lipases |Type-B carboxylesterase/lipase |Candida cylindracea, cholesterol esterase [TaxId: 44322]
d3a0ja_ : (LYS7) (GLU43) [view usage] : b.40.4.5 |OB-fold |Nucleic acid-binding proteins |Cold shock DNA-binding domain-like |automated matches |Thermus thermophilus HB8 [TaxId: 300852]
d1g6pa_ : (LYS6) (GLU42) [view usage] : b.40.4.5 |OB-fold |Nucleic acid-binding proteins |Cold shock DNA-binding domain-like |Major cold shock protein |Thermotoga maritima [TaxId: 2336]
d1tdfa2 : (ASN204) (ILE243) [view usage] : c.3.1.5 |FAD/NAD(P)-binding domain |FAD/NAD(P)-binding domain |FAD/NAD-linked reductases, N-terminal and central domains |Thioredoxin reductase |Escherichia coli [TaxId: 562]
d4n8x1_ : (GLY8) (PHE52) [view usage] : b.40.15.1 |OB-fold |EutN/CcmL-like |EutN/CcmL-like |Carbon dioxide concentrating mechanism protein CcmL |Nostoc sp. [TaxId: 103690]
d2hevf1 : (LYS63) (CYS97) [view usage] : b.22.1.1 |TNF-like |TNF-like |TNF-like |Tumor necrosis factor ligand superfamily member 4, OX40L |Human (Homo sapiens) [TaxId: 9606]
d1g5bb_ : (ASP180) (GLN217) [view usage] : d.159.1.3 |Metallo-dependent phosphatases |Metallo-dependent phosphatases |Protein serine/threonine phosphatase |lambda ser/thr protein phosphatase |Bacteriophage lambda [TaxId: 10710]
d2a1ua1 : (ILE136) (SER167) [view usage] : c.26.2.3 |Adenine nucleotide alpha hydrolase-like |Adenine nucleotide alpha hydrolases-like |ETFP subunits |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1erga_ : (LEU1) (CYS39) [view usage] : g.7.1.3 |Snake toxin-like |Snake toxin-like |Extracellular domain of cell surface receptors |CD59 |Human (Homo sapiens) [TaxId: 9606]
d3hqda_ : (ILE40) (ALA74) [view usage] : c.37.1.9 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Motor proteins |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1gbra_ : (ASP23) (HIS58) [view usage] : b.34.2.1 |SH3-like barrel |SH3-domain |SH3-domain |Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains |Mouse (Mus musculus) [TaxId: 10090]
d3i2za_ : (LYS9) (GLY47) [view usage] : b.40.4.5 |OB-fold |Nucleic acid-binding proteins |Cold shock DNA-binding domain-like |automated matches |Salmonella typhimurium [TaxId: 90371]
d2o2aa1 : (THR28) (GLU83) [view usage] : d.33.1.2 |SecB-like |SecB-like |SP1558-like |Hypothetical protein gbs1413 |Streptococcus agalactiae [TaxId: 1311]
d1efva1 : (ILE136) (SER167) [view usage] : c.26.2.3 |Adenine nucleotide alpha hydrolase-like |Adenine nucleotide alpha hydrolases-like |ETFP subunits |Large, alpha subunit of electron transfer flavoprotein ETFP, N-terminal domain |Human (Homo sapiens) [TaxId: 9606]
d1goja_ : (ILE29) (MET57) [view usage] : c.37.1.9 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Motor proteins |Kinesin |Fungus (Neurospora crassa) [TaxId: 5141]
d1n5za_ : (LEU39) (LYS77) [view usage] : b.34.2.1 |SH3-like barrel |SH3-domain |SH3-domain |Peroxisomal membrane protein Pex13p |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d4hnak_ : (ILE30) (GLN53) [view usage] : c.37.1.9 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Motor proteins |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1b41b_ : (MET2) (CYS39) [view usage] : g.7.1.1 |Snake toxin-like |Snake toxin-like |Snake venom toxins |Fasciculin |Green mamba (Dendroaspis angusticeps) [TaxId: 8618]
d1fuwa_ : (PRO40) (LYS83) [view usage] : d.17.1.1 |Cystatin-like |Cystatin/monellin |Monellin |Monellin, B & A chains together |Serendipity berry (Dioscoreophyllum cumminsii) [TaxId: 3457]
d1q1ra2 : (CYS215) (GLY247) [view usage] : c.3.1.5 |FAD/NAD(P)-binding domain |FAD/NAD(P)-binding domain |FAD/NAD-linked reductases, N-terminal and central domains |Putidaredoxin reductase |Pseudomonas putida [TaxId: 303]
d2f9ca1 : (GLN135) (GLY173) [view usage] : b.81.1.7 |Single-stranded left-handed beta-helix |Trimeric LpxA-like enzymes |YdcK-like |Hypothetical protein YdcK |Salmonella enterica [TaxId: 28901]
d1l2fa1 : (ILE143) (ALA174) [view usage] : b.40.4.5 |OB-fold |Nucleic acid-binding proteins |Cold shock DNA-binding domain-like |S1 domain of NusA |Thermotoga maritima [TaxId: 2336]
d3i2zb_ : (LYS9) (GLU46) [view usage] : b.40.4.5 |OB-fold |Nucleic acid-binding proteins |Cold shock DNA-binding domain-like |automated matches |Salmonella typhimurium [TaxId: 90371]
d1kcaa_ : (LEU194) (GLY223) [view usage] : b.87.1.1 |LexA/Signal peptidase |LexA/Signal peptidase |LexA-related |lambda repressor C-terminal domain |Bacteriophage lambda [TaxId: 10710]
d1mz5a2 : (ASN105) (GLY178) [view usage] : b.68.1.1 |6-bladed beta-propeller |Sialidases |Sialidases (neuraminidases) |Trypanosoma sialidase |Trypanosoma rangeli [TaxId: 5698]
d2hnga1 : (ALA32) (GLU87) [view usage] : d.33.1.2 |SecB-like |SecB-like |SP1558-like |Hypothetical protein SP1558 |Pneumococcus (Streptococcus pneumoniae) [TaxId: 1313]
d1zy9a1 : (PHE105) (LEU136) [view usage] : b.30.5.11 |Supersandwich |Galactose mutarotase-like |YicI N-terminal domain-like |Alpha-galactosidase GalA N-terminal domain |Thermotoga maritima [TaxId: 2336]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
b.68, c.69, b.81, d.159, c.26, b.30, b.40, c.37, d.17, b.22, b.34, c.3, b.87, d.54, d.33, d.24, g.7