Tableau information
Concept source: d1s4ia_ amino acid (a.a.) range (LEU128)(LEU190)
nSSEs in this Concept: 4
String of secondary struct.elems. (SSEs) defining this concept: EEEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(LEU128) (ALA132) E1
(GLY134) (ASP144) E2
(GLY160) (ILE165) E3
(ILE184) (LEU190) E4
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 165.0° E2
E3 -38.8° 133.8° E3
E4 130.8° -49.1° 157.7°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±11.6° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1kenl1 : (ARG62) (GLY101) [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |Immunoglobulin light chain kappa variable domain, VL-kappa |Mouse (Mus musculus), cluster 3.1 [TaxId: 10090]
d2itea1 : (LEU126) (GLU177) [view usage] : b.1.28.1 |Immunoglobulin-like beta-sandwich |NEAT domain-like |NEAT domain |Iron-regulated surface determinant protein A, IsdA |Staphylococcus aureus [TaxId: 1280]
d1mxda1 : (LEU364) (ASP405) [view usage] : b.71.1.1 |Glycosyl hydrolase domain |Glycosyl hydrolase domain |alpha-Amylases, C-terminal beta-sheet domain |Bacterial alpha-Amylase |Pyrococcus woesei [TaxId: 2262]
d2wwob_ : (GLY103) (GLU161) [view usage] : b.1.8.1 |Immunoglobulin-like beta-sandwich |Cu,Zn superoxide dismutase-like |Cu,Zn superoxide dismutase-like |automated matches |Yersinia pseudotuberculosis [TaxId: 633]
d3q5vb_ : (ASN29) (ILE75) [view usage] : b.40.5.1 |OB-fold |Inorganic pyrophosphatase |Inorganic pyrophosphatase |automated matches |Thermococcus thioreducens [TaxId: 277988]
d2wwnb_ : (LEU104) (GLU161) [view usage] : b.1.8.1 |Immunoglobulin-like beta-sandwich |Cu,Zn superoxide dismutase-like |Cu,Zn superoxide dismutase-like |automated matches |Yersinia pseudotuberculosis [TaxId: 633]
d1zxqa1 : (LEU132) (HIS183) [view usage] : b.1.1.3 |Immunoglobulin-like beta-sandwich |Immunoglobulin |C2 set domains |Intercellular cell adhesion molecule-2 (ICAM-2) |Human (Homo sapiens) [TaxId: 9606]
d1z9na_ : (ALA119) (VAL175) [view usage] : b.1.8.1 |Immunoglobulin-like beta-sandwich |Cu,Zn superoxide dismutase-like |Cu,Zn superoxide dismutase-like |Cu,Zn superoxide dismutase, SOD |Haemophilus ducreyi [TaxId: 730]
d3eyya_ : (LEU67) (ASP103) [view usage] : a.4.5.0 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |automated matches |automated matches |Streptomyces coelicolor [TaxId: 1902]
d1ipkb1 : (ASP89) (LEU125) [view usage] : b.82.1.2 |Double-stranded beta-helix |RmlC-like cupins |Germin/Seed storage 7S protein |Seed storage 7S protein |Soybean (Glycine max), beta-conglycinin beta subunit [TaxId: 3847]
d1jk9a_ : (GLY85) (VAL148) [view usage] : b.1.8.1 |Immunoglobulin-like beta-sandwich |Cu,Zn superoxide dismutase-like |Cu,Zn superoxide dismutase-like |Cu,Zn superoxide dismutase, SOD |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1mwoa1 : (LEU364) (ASP405) [view usage] : b.71.1.1 |Glycosyl hydrolase domain |Glycosyl hydrolase domain |alpha-Amylases, C-terminal beta-sheet domain |Bacterial alpha-Amylase |Pyrococcus woesei [TaxId: 2262]
d1bqka_ : (GLU54) (GLY93) [view usage] : b.6.1.1 |Cupredoxin-like |Cupredoxins |Plastocyanin/azurin-like |Pseudoazurin |Achromobacter cycloclastes [TaxId: 223]
d2cx7a_ : (GLY48) (ASP79) [view usage] : d.106.1.1 |SCP-like |SCP-like |Sterol carrier protein, SCP |automated matches |Thermus thermophilus [TaxId: 274]
d1srda_ : (GLY85) (VAL154) [view usage] : b.1.8.1 |Immunoglobulin-like beta-sandwich |Cu,Zn superoxide dismutase-like |Cu,Zn superoxide dismutase-like |Cu,Zn superoxide dismutase, SOD |Spinach (Spinacia oleracea) [TaxId: 3562]
d2cx7b_ : (GLY48) (ASP79) [view usage] : d.106.1.1 |SCP-like |SCP-like |Sterol carrier protein, SCP |automated matches |Thermus thermophilus [TaxId: 274]
d1nwoa_ : (ILE81) (LEU127) [view usage] : b.6.1.1 |Cupredoxin-like |Cupredoxins |Plastocyanin/azurin-like |Azurin |Pseudomonas putida [TaxId: 303]
d1mkfa_ : (PRO338) (TYR378) [view usage] : b.116.1.1 |Viral chemokine binding protein m3 |Viral chemokine binding protein m3 |Viral chemokine binding protein m3 |Viral chemokine binding protein m3 |Murid herpesvirus 4, MuHV-4 [TaxId: 33708]
d1e6aa_ : (ALA55) (GLY125) [view usage] : b.40.5.1 |OB-fold |Inorganic pyrophosphatase |Inorganic pyrophosphatase |Inorganic pyrophosphatase |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d4jgaa2 : (GLN375) (SER425) [view usage] : c.95.1.0 |Thiolase-like |Thiolase-like |automated matches |automated matches |Rickettsia rickettsii [TaxId: 392021]
d1nzra_ : (ILE81) (LEU127) [view usage] : b.6.1.1 |Cupredoxin-like |Cupredoxins |Plastocyanin/azurin-like |Azurin |Pseudomonas aeruginosa [TaxId: 287]
d2yowa_ : (ILE153) (ASP201) [view usage] : b.1.18.0 |Immunoglobulin-like beta-sandwich |E set domains |automated matches |automated matches |Bacillus amyloliquefaciens [TaxId: 1390]
d2in2a_ : (ASP98) (ARG133) [view usage] : b.47.1.0 |Trypsin-like serine proteases |Trypsin-like serine proteases |automated matches |automated matches |Human rhinovirus 14 [TaxId: 12131]
d1al0g_ : (GLY119) (GLN163) [view usage] : b.121.5.1 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |ssDNA viruses |Microviridae-like VP |Microvirus capsid proteins |Bacteriophage phi-X174 [TaxId: 10847]
d3qzmb_ : (GLN124) (PHE176) [view usage] : b.1.28.1 |Immunoglobulin-like beta-sandwich |NEAT domain-like |NEAT domain |automated matches |Staphylococcus aureus [TaxId: 158879]
d1edya_ : (GLU85) (ALA130) [view usage] : b.1.29.1 |Immunoglobulin-like beta-sandwich |Macroglobulin |Alpha-macroglobulin receptor domain |alpha-1-macroglobulin |Norway rat (Rattus norvegicus) [TaxId: 10116]
d1o75a2 : (GLN377) (LYS411) [view usage] : b.1.20.1 |Immunoglobulin-like beta-sandwich |Tp47 lipoprotein, middle and C-terminal domains |Tp47 lipoprotein, middle and C-terminal domains |Tp47 lipoprotein, middle and C-terminal domains |Treponema pallidum [TaxId: 160]
d4no4a_ : (ASP96) (GLU135) [view usage] : b.29.1.3 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Galectin (animal S-lectin) |Galectin-1 |Norway rat (Rattus norvegicus) [TaxId: 10116]
d1s4ia_ : (LEU128) (LEU190) [view usage] : b.1.8.0 |Immunoglobulin-like beta-sandwich |Cu,Zn superoxide dismutase-like |automated matches |automated matches |Bacillus subtilis [TaxId: 1423]
d1lkta_ : (PRO64) (ASN105) [view usage] : b.90.1.1 |Head-binding domain of phage P22 tailspike protein |Head-binding domain of phage P22 tailspike protein |Head-binding domain of phage P22 tailspike protein |Head-binding domain of phage P22 tailspike protein |Salmonella bacteriophage P22 [TaxId: 10754]
d1eqwb_ : (GLY84) (GLU148) [view usage] : b.1.8.1 |Immunoglobulin-like beta-sandwich |Cu,Zn superoxide dismutase-like |Cu,Zn superoxide dismutase-like |Cu,Zn superoxide dismutase, SOD |Salmonella typhimurium [TaxId: 90371]
d1eqwa_ : (LEU85) (GLU148) [view usage] : b.1.8.1 |Immunoglobulin-like beta-sandwich |Cu,Zn superoxide dismutase-like |Cu,Zn superoxide dismutase-like |Cu,Zn superoxide dismutase, SOD |Salmonella typhimurium [TaxId: 90371]
d3qgva2 : (LEU364) (TYR403) [view usage] : b.71.1.0 |Glycosyl hydrolase domain |Glycosyl hydrolase domain |automated matches |automated matches |Pyrococcus woesei [TaxId: 2262]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
b.82, b.29, b.47, b.40, c.95, b.121, b.6, b.1, d.106, a.4, b.71, b.116, b.90