Tableau information
Concept source: d1c5md_ amino acid (a.a.) range (ARG63)(LEU108)
nSSEs in this Concept: 4
String of secondary struct.elems. (SSEs) defining this concept: EEEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(ARG63) (GLY69) E1
(GLU80) (GLU84) E2
(GLU86) (HIS91) E3
(ASP102) (LEU108) E4
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 148.7° E2
E3 98.1° -79.6° E3
E4 -77.1° 96.3° 163.7°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±12.1° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1gl4a1 : (SER400) (THR445) [view usage] : d.22.1.2 |GFP-like |GFP-like |Domain G2 of nidogen-1 |Domain G2 of nidogen-1 |Mouse (Mus musculus) [TaxId: 10090]
d1kjza2 : (LYS350) (LYS377) [view usage] : b.44.1.1 |Elongation factor/aminomethyltransferase common domain |EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain |EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain |Initiation factor eIF2 gamma subunit |Pyrococcus abyssi [TaxId: 29292]
d4m7ga_ : (ASP51) (THR93) [view usage] : b.47.1.0 |Trypsin-like serine proteases |Trypsin-like serine proteases |automated matches |automated matches |Saccharopolyspora erythraea [TaxId: 1836]
d2ynaa_ : (ILE17) (PRO39) [view usage] : b.47.1.0 |Trypsin-like serine proteases |Trypsin-like serine proteases |automated matches |automated matches |Tylonycteris bat coronavirus hku4 [TaxId: 694007]
d1s0ua2 : (GLY377) (LEU407) [view usage] : b.44.1.1 |Elongation factor/aminomethyltransferase common domain |EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain |EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain |Initiation factor eIF2 gamma subunit |Methanococcus jannaschii [TaxId: 2190]
d4aa9a_ : (GLY18) (SER44) [view usage] : b.50.1.2 |Acid proteases |Acid proteases |Pepsin-like |automated matches |Camel (Camelus dromedarius) [TaxId: 9838]
d1t9fa_ : (LEU105) (HIS155) [view usage] : b.42.6.1 |beta-Trefoil |MIR domain |MIR domain |Hypothetical protein R12E2.13 (1D10) |Nematode (Caenorhabditis elegans) [TaxId: 6239]
d1e0ta1 : (ILE72) (SER103) [view usage] : b.58.1.1 |PK beta-barrel domain-like |PK beta-barrel domain-like |Pyruvate kinase beta-barrel domain |Pyruvate kinase (PK) |Escherichia coli [TaxId: 562]
d2d04f_ : (ARG53) (PRO99) [view usage] : b.78.1.0 |beta-Prism II |alpha-D-mannose-specific plant lectins |automated matches |automated matches |Curculigo latifolia [TaxId: 4676]
d2cmba_ : (ARG56) (GLN85) [view usage] : c.45.1.2 |(Phosphotyrosine protein) phosphatases II |(Phosphotyrosine protein) phosphatases II |Higher-molecular-weight phosphotyrosine protein phosphatases |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1n7za_ : (GLY265) (PHE334) [view usage] : b.127.1.1 |Baseplate structural protein gp8 |Baseplate structural protein gp8 |Baseplate structural protein gp8 |Baseplate structural protein gp8 |Bacteriophage T4 [TaxId: 10665]
d1g90a_ : (TYR48) (GLY98) [view usage] : f.4.1.1 |Transmembrane beta-barrels |OMPA-like |Outer membrane protein |Outer membrane protein A (OMPA) transmembrane domain |Escherichia coli [TaxId: 562]
d3i78a_ : (SER63) (LYS107) [view usage] : b.47.1.1 |Trypsin-like serine proteases |Trypsin-like serine proteases |Prokaryotic proteases |Trypsin |Streptomyces griseus, strain k1 [TaxId: 1911]
d2znra_ : (ILE291) (ASN327) [view usage] : c.97.3.1 |Cytidine deaminase-like |JAB1/MPN domain |JAB1/MPN domain |automated matches |Human (Homo sapiens) [TaxId: 9606]
d4df3a_ : (GLY15) (ASN56) [view usage] : c.66.1.0 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |automated matches |automated matches |Aeropyrum pernix [TaxId: 56636]
d1nh1a_ : (ASP143) (ALA181) [view usage] : e.45.1.1 |Antivirulence factor |Antivirulence factor |Antivirulence factor |Type III effector AvrB |Pseudomonas syringae [TaxId: 317]
d3op1b2 : (VAL226) (ASP260) [view usage] : b.43.5.0 |Reductase/isomerase/elongation factor common domain |Riboflavin kinase-like |automated matches |automated matches |Pneumococcus (Streptococcus pneumoniae) [TaxId: 1313]
d2vv6a_ : (VAL222) (THR257) [view usage] : d.110.3.2 |Profilin-like |PYP-like sensor domain (PAS domain) |Heme-binding PAS domain |Histidine kinase FixL heme domain |Bradyrhizobium japonicum [TaxId: 375]
d1ogmx2 : (THR349) (PRO378) [view usage] : b.80.1.10 |Single-stranded right-handed beta-helix |Pectin lyase-like |Dextranase, catalytic domain |Dextranase, catalytic domain |Penicillium minioluteum [TaxId: 28574]
d3zpyb_ : (THR294) (GLU345) [view usage] : b.29.1.0 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |automated matches |automated matches |Zobellia galactanivorans [TaxId: 63186]
d1s66u_ : (ARG97) (ASP132) [view usage] : d.110.3.2 |Profilin-like |PYP-like sensor domain (PAS domain) |Heme-binding PAS domain |Direct oxygen sensor protein, DOS |Escherichia coli [TaxId: 562]
d1h8ga_ : (GLY291) (LYS318) [view usage] : b.109.1.1 |beta-hairpin stack |Cell wall binding repeat |Cell wall binding repeat |Choline binding domain of autolysin C-LytA |Pneumococcus (Streptococcus pneumoniae) [TaxId: 1313]
d2ox7b_ : (PRO5) (ASP37) [view usage] : b.172.1.1 |YopX-like |YopX-like |YopX-like |Hypothetical protein EF1440 |Enterococcus faecalis [TaxId: 1351]
d3h7oa_ : (THR15) (THR41) [view usage] : b.47.1.0 |Trypsin-like serine proteases |Trypsin-like serine proteases |automated matches |automated matches |Sarcoptes scabiei [TaxId: 197185]
d1wjqa_ : (LYS17) (PHE48) [view usage] : b.34.9.3 |SH3-like barrel |Tudor/PWWP/MBT |MBT repeat |Lethal(3)malignant brain tumor-like 3 protein, L3MBTL3 (KIAA1798) |Human (Homo sapiens) [TaxId: 9606]
d1qa7b_ : (MET54) (PRO91) [view usage] : b.47.1.4 |Trypsin-like serine proteases |Trypsin-like serine proteases |Viral cysteine protease of trypsin fold |3C cysteine protease (picornain 3C) |Human hepatitis A virus [TaxId: 208726]
d1vs5l1 : (VAL62) (GLY99) [view usage] : b.40.4.5 |OB-fold |Nucleic acid-binding proteins |Cold shock DNA-binding domain-like |Ribosomal protein S12 |Escherichia coli [TaxId: 562]
d2hafa1 : (ASN20) (ASN55) [view usage] : d.310.1.1 |VC0467-like |VC0467-like |VC0467-like |Hypothetical protein VC0467 |Vibrio cholerae [TaxId: 666]
d2z77d_ : (VAL94) (TRP128) [view usage] : d.17.4.3 |Cystatin-like |NTF2-like |Ketosteroid isomerase-like |Hypothetical protein Rv0760c |Mycobacterium tuberculosis H37Rv [TaxId: 83332]
d2aj7b_ : (VAL91) (ASP130) [view usage] : b.158.1.1 |BH3618-like |BH3618-like |BH3618-like |Hypothetical protein BH3618 |Bacillus halodurans [TaxId: 86665]
d2cmza1 : (GLY202) (PRO232) [view usage] : e.76.1.2 |Viral glycoprotein ectodomain-like |Viral glycoprotein ectodomain-like |Spike glycoprotein-like |Spike glycoprotein |Vesicular stomatitis indiana virus [TaxId: 11277]
d3tloa_ : (ASN64) (VAL90) [view usage] : b.47.1.4 |Trypsin-like serine proteases |Trypsin-like serine proteases |Viral cysteine protease of trypsin fold |Coronavirus main proteinase (3Cl-pro, putative coronavirus nsp2) |Human coronavirus [TaxId: 443239]
d2a15a1 : (ILE92) (TRP128) [view usage] : d.17.4.3 |Cystatin-like |NTF2-like |Ketosteroid isomerase-like |Hypothetical protein Rv0760c |Mycobacterium tuberculosis [TaxId: 1773]
d2dfka2 : (MET272) (LYS298) [view usage] : b.55.1.1 |PH domain-like barrel |PH domain-like |Pleckstrin-homology domain (PH domain) |Rho guanine nucleotide exchange factor 9, Collybistin |Norway rat (Rattus norvegicus) [TaxId: 10116]
d2ox7c_ : (PRO5) (ASP37) [view usage] : b.172.1.1 |YopX-like |YopX-like |YopX-like |Hypothetical protein EF1440 |Enterococcus faecalis [TaxId: 1351]
d1wrua2 : (THR4) (PRO41) [view usage] : b.106.1.1 |Phage tail proteins |Phage tail proteins |Baseplate protein-like |Baseplate protein gpP |Bacteriophage Mu [TaxId: 10677]
d4ilgc_ : (ILE2201) (SER2239) [view usage] : c.97.3.0 |Cytidine deaminase-like |JAB1/MPN domain |automated matches |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 559292]
d1pytc_ : (TRP429) (THR454) [view usage] : b.47.1.2 |Trypsin-like serine proteases |Trypsin-like serine proteases |Eukaryotic proteases |Procarboxypeptidase A-S6 subunit III (zymogen E) |Cow (Bos taurus) [TaxId: 9913]
d2vh4a_ : (VAL360) (LEU420) [view usage] : e.1.1.0 |Serpins |Serpins |automated matches |automated matches |Thermoanaerobacter tengcongensis [TaxId: 273068]
d1by3a_ : (VAL490) (ALA539) [view usage] : f.4.3.3 |Transmembrane beta-barrels |Porins |Ligand-gated protein channel |Ferric hydroxamate uptake receptor FhuA |Escherichia coli [TaxId: 562]
d1eypa_ : (SER4) (LEU30) [view usage] : d.36.1.1 |Chalcone isomerase |Chalcone isomerase |Chalcone isomerase |Chalcone isomerase |Alfalfa (Medicago sativa) [TaxId: 3879]
d1jx0a_ : (SER4) (LEU30) [view usage] : d.36.1.1 |Chalcone isomerase |Chalcone isomerase |Chalcone isomerase |Chalcone isomerase |Alfalfa (Medicago sativa) [TaxId: 3879]
d1baia_ : (ARG10) (SER46) [view usage] : b.50.1.1 |Acid proteases |Acid proteases |Retroviral protease (retropepsin) |Rous sarcoma virus protease |Rous sarcoma virus, strain pr-C [TaxId: 11886]
d2vv6c_ : (VAL222) (THR257) [view usage] : d.110.3.2 |Profilin-like |PYP-like sensor domain (PAS domain) |Heme-binding PAS domain |Histidine kinase FixL heme domain |Bradyrhizobium japonicum [TaxId: 375]
d1fq3a_ : (SER61) (GLN107) [view usage] : b.47.1.2 |Trypsin-like serine proteases |Trypsin-like serine proteases |Eukaryotic proteases |Granzyme B |Human (Homo sapiens) [TaxId: 9606]
d1k8wa3 : (ARG282) (ARG307) [view usage] : b.122.1.1 |PUA domain-like |PUA domain-like |PUA domain |Pseudouridine synthase II TruB, C-terminal domain |Escherichia coli [TaxId: 562]
d2ox7a1 : (PRO5) (ASP37) [view usage] : b.172.1.1 |YopX-like |YopX-like |YopX-like |Hypothetical protein EF1440 |Enterococcus faecalis [TaxId: 1351]
d1ix5a_ : (GLY110) (ASP133) [view usage] : d.26.1.1 |FKBP-like |FKBP-like |FKBP immunophilin/proline isomerase |Archaeal FKBP |Methanococcus thermolithotrophicus [TaxId: 2186]
d2wtra1 : (SER126) (PRO175) [view usage] : b.1.18.11 |Immunoglobulin-like beta-sandwich |E set domains |Arrestin/Vps26-like |Arrestin |Cow (Bos taurus), beta-arrestin 1 [TaxId: 9913]
d2f5ka1 : (VAL17) (GLY48) [view usage] : b.34.13.3 |SH3-like barrel |Chromo domain-like |Chromo barrel domain |Mortality factor 4-like protein 1, MRG15 |Human (Homo sapiens) [TaxId: 9606]
d1kk0a2 : (LYS350) (LYS377) [view usage] : b.44.1.1 |Elongation factor/aminomethyltransferase common domain |EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain |EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain |Initiation factor eIF2 gamma subunit |Pyrococcus abyssi [TaxId: 29292]
d2exda1 : (ILE112) (ARG139) [view usage] : b.40.12.1 |OB-fold |NfeD domain-like |NfeD domain-like |Hypothetical protein PH0471 |Pyrococcus horikoshii [TaxId: 53953]
d3u1jb_ : (GLU93) (ALA127) [view usage] : b.47.1.3 |Trypsin-like serine proteases |Trypsin-like serine proteases |Viral proteases |NS3 protease |Dengue virus 3 [TaxId: 408693]
d3kmaa_ : (ASN75) (ILE103) [view usage] : b.85.7.2 |beta-clip |SET domain |Viral histone H3 Lysine 27 Methyltransferase |Viral histone H3 Lysine 27 Methyltransferase |Paramecium bursaria chlorella virus 1, PBCV-1 [TaxId: 10506]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
b.80, b.29, b.47, c.66, c.45, b.50, f.4, b.40, b.85, b.122, b.1, c.97, d.110, b.42, d.17, b.55, e.1, b.34, b.109, b.43,
d.26, b.44, e.76, b.106, d.36, b.58, d.310, b.172, d.22, b.78, b.158, e.45, b.127