Tableau information
Concept source: d1mr5a2 amino acid (a.a.) range (VAL18)(GLU55)
nSSEs in this Concept: 4
String of secondary struct.elems. (SSEs) defining this concept: EEEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(VAL18) (ASP23) E1
(GLY24) (GLU28) E2
(HIS32) (VAL40) E3
(VAL45) (GLU55) E4
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 159.3° E2
E3 102.6° -98.1° E3
E4 -65.8° 94.8° 157.0°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±13.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d2h12b_ : (ALA13) (LYS40) [view usage] : a.103.1.1 |Citrate synthase |Citrate synthase |Citrate synthase |automated matches |Acetobacter aceti [TaxId: 435]
d3mmgb_ : (ARG108) (TRP143) [view usage] : b.47.1.0 |Trypsin-like serine proteases |Trypsin-like serine proteases |automated matches |automated matches |Tobacco vein mottling virus [TaxId: 12228]
d1eqnb_ : (MSE187) (VAL222) [view usage] : e.13.1.1 |DNA primase core |DNA primase core |DNA primase DnaG catalytic core |DNA primase DnaG catalytic core |Escherichia coli [TaxId: 562]
d3ljda_ : (GLN79) (ASP123) [view usage] : d.5.1.0 |RNase A-like |RNase A-like |automated matches |automated matches |Zebrafish (Danio rerio) [TaxId: 7955]
d1xl4a1 : (GLU173) (HIS216) [view usage] : b.1.18.16 |Immunoglobulin-like beta-sandwich |E set domains |Cytoplasmic domain of inward rectifier potassium channel |Inward rectifier potassium channel kirbac3.1 |Magnetospirillum magnetotacticum [TaxId: 188]
d1hwwa2 : (THR614) (GLY662) [view usage] : b.30.5.6 |Supersandwich |Galactose mutarotase-like |alpha-mannosidase, C-terminal domain |Golgi alpha-mannosidase II |Fruit fly (Drosophila melanogaster) [TaxId: 7227]
d1lvba_ : (ARG108) (TRP143) [view usage] : b.47.1.3 |Trypsin-like serine proteases |Trypsin-like serine proteases |Viral proteases |TEV protease (nucleat inclusion protein A, NIA) |Tobacco etch virus, TEV [TaxId: 12227]
d3mmga_ : (LYS106) (TRP143) [view usage] : b.47.1.0 |Trypsin-like serine proteases |Trypsin-like serine proteases |automated matches |automated matches |Tobacco vein mottling virus [TaxId: 12228]
d1tyea_ : (GLN111) (CYS146) [view usage] : b.69.8.1 |7-bladed beta-propeller |Integrin alpha N-terminal domain |Integrin alpha N-terminal domain |Integrin alpha N-terminal domain |Human (Homo sapiens), isoform IIb [TaxId: 9606]
d3s8ra_ : (SER583) (PRO620) [view usage] : d.153.1.2 |Ntn hydrolase-like |N-terminal nucleophile aminohydrolases (Ntn hydrolases) |Penicillin acylase, catalytic domain |Cephalosporin acylase |Pseudomonas sp., glutarylamidase [TaxId: 306]
d1l6ja5 : (GLY344) (ASP390) [view usage] : g.14.1.2 |Kringle-like |Kringle-like |Fibronectin type II module |Gelatinase B (MMP-9) type II modules |Human (Homo sapiens) [TaxId: 9606]
d2jzka_ : (ARG17) (LEU90) [view usage] : b.89.1.0 |Cyanovirin-N |Cyanovirin-N |automated matches |automated matches |Tuber borchii [TaxId: 42251]
d1keha_ : (SER583) (PRO620) [view usage] : d.153.1.2 |Ntn hydrolase-like |N-terminal nucleophile aminohydrolases (Ntn hydrolases) |Penicillin acylase, catalytic domain |Cephalosporin acylase |Brevundimonas diminuta [TaxId: 293]
d1j5ha_ : (LEU45) (GLY84) [view usage] : b.1.7.1 |Immunoglobulin-like beta-sandwich |Actinoxanthin-like |Actinoxanthin-like |Neocarzinostatin |Streptomyces carzinostaticus [TaxId: 1897]
d2f1aa2 : (THR614) (GLY662) [view usage] : b.30.5.6 |Supersandwich |Galactose mutarotase-like |alpha-mannosidase, C-terminal domain |Golgi alpha-mannosidase II |Fruit fly (Drosophila melanogaster) [TaxId: 7227]
d1jzua_ : (LEU47) (GLU80) [view usage] : b.60.1.1 |Lipocalins |Lipocalins |Retinol binding protein-like |Lipocalin q83 |Common quail (Coturnix coturnix) [TaxId: 9091]
d1slqe_ : (LEU261) (GLY322) [view usage] : f.47.1.1 |VP4 membrane interaction domain |VP4 membrane interaction domain |VP4 membrane interaction domain |VP4 membrane interaction domain |Rhesus rotavirus [TaxId: 10969]
d4c03a_ : (GLY290) (LEU346) [view usage] : c.66.1.0 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |automated matches |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d1htya2 : (THR614) (LEU661) [view usage] : b.30.5.6 |Supersandwich |Galactose mutarotase-like |alpha-mannosidase, C-terminal domain |Golgi alpha-mannosidase II |Fruit fly (Drosophila melanogaster) [TaxId: 7227]
d1ll8a_ : (VAL78) (PRO111) [view usage] : d.110.3.5 |Profilin-like |PYP-like sensor domain (PAS domain) |N-terminal PAS domain of Pas kinase |N-terminal PAS domain of Pas kinase |Human (Homo sapiens) [TaxId: 9606]
d1fi1a_ : (VAL501) (ALA550) [view usage] : f.4.3.3 |Transmembrane beta-barrels |Porins |Ligand-gated protein channel |Ferric hydroxamate uptake receptor FhuA |Escherichia coli [TaxId: 562]
d3s8rb_ : (SER583) (PRO620) [view usage] : d.153.1.2 |Ntn hydrolase-like |N-terminal nucleophile aminohydrolases (Ntn hydrolases) |Penicillin acylase, catalytic domain |Cephalosporin acylase |Pseudomonas sp., glutarylamidase [TaxId: 306]
d1pytc_ : (THR463) (LYS507) [view usage] : b.47.1.2 |Trypsin-like serine proteases |Trypsin-like serine proteases |Eukaryotic proteases |Procarboxypeptidase A-S6 subunit III (zymogen E) |Cow (Bos taurus) [TaxId: 9913]
d2wlka2 : (GLU173) (HIS216) [view usage] : b.1.18.16 |Immunoglobulin-like beta-sandwich |E set domains |Cytoplasmic domain of inward rectifier potassium channel |Inward rectifier potassium channel kirbac3.1 |Magnetospirillum magnetotacticum [TaxId: 188]
d1vk6a3 : (TRP12) (GLN58) [view usage] : d.113.1.4 |Nudix |Nudix |NADH pyrophosphatase |NADH pyrophosphatase |Escherichia coli [TaxId: 562]
d4e57a_ : (SER579) (PRO616) [view usage] : d.153.1.2 |Ntn hydrolase-like |N-terminal nucleophile aminohydrolases (Ntn hydrolases) |Penicillin acylase, catalytic domain |automated matches |Pseudomonas sp. [TaxId: 81841]
d1p16a1 : (ASN248) (ASP298) [view usage] : b.40.4.6 |OB-fold |Nucleic acid-binding proteins |DNA ligase/mRNA capping enzyme postcatalytic domain |mRNA capping enzyme alpha subunit |Yeast (Candida albicans) [TaxId: 5476]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
b.68, b.69, b.30, b.47, c.66, f.4, b.40, a.103, d.153, b.60, b.1, d.110, e.13, d.5, f.47, d.113, b.89, g.14