Tableau information
Concept source: d3li5a_ amino acid (a.a.) range (GLU225)(GLY253)
nSSEs in this Concept: 4
String of secondary struct.elems. (SSEs) defining this concept: EEEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(GLU225) (ALA228) E1
(ASN229) (GLU235) E2
(LEU239) (GLY245) E3
(ILE249) (GLY253) E4
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 -41.2° E2
E3 153.0° 155.3° E3
E4 -57.1° -45.3° 147.2°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±13.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1d2oa1 : (GLU535) (ASP574) [view usage] : b.3.5.1 |Prealbumin-like |Cna protein B-type domain |Cna protein B-type domain |B repeat unit of collagen binding surface protein (cna) |Staphylococcus aureus [TaxId: 1280]
d3dhma_ : (MET0) (LEU39) [view usage] : b.1.1.2 |Immunoglobulin-like beta-sandwich |Immunoglobulin |C1 set domains (antibody constant domain-like) |beta2-microglobulin |Human (Homo sapiens) [TaxId: 9606]
d2d7vb_ : (MSE8) (LEU45) [view usage] : d.227.1.1 |OsmC-like |OsmC-like |Ohr/OsmC resistance proteins |Hypothetical protein VCA0330 |Vibrio cholerae [TaxId: 666]
d3u1ra2 : (SER425) (VAL470) [view usage] : b.80.7.0 |Single-stranded right-handed beta-helix |beta-Roll |automated matches |automated matches |Flavobacterium sp. [TaxId: 686394]
d1rvfl_ : (VAL3) (TYR32) [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |Immunoglobulin light chain kappa variable domain, VL-kappa |Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
d1ctoa_ : (SER64) (ARG105) [view usage] : b.1.2.1 |Immunoglobulin-like beta-sandwich |Fibronectin type III |Fibronectin type III |Granulocyte colony-stimulating factor (GC-SF) receptor |Mouse (Mus musculus) [TaxId: 10090]
d4am0t_ : (VAL335) (LYS394) [view usage] : b.1.18.0 |Immunoglobulin-like beta-sandwich |E set domains |automated matches |automated matches |Dengue virus [TaxId: 11070]
d1rw9a3 : (ASN540) (ASP577) [view usage] : b.30.5.2 |Supersandwich |Galactose mutarotase-like |Hyaluronate lyase-like, central domain |Chondroitinase AC |Arthrobacter aurescens [TaxId: 43663]
d1jd3a_ : (THR123) (PHE157) [view usage] : d.190.1.1 |Chorismate lyase-like |Chorismate lyase-like |Chorismate lyase |Chorismate lyase |Escherichia coli [TaxId: 562]
d2pyjb1 : (ASN77) (ASP121) [view usage] : c.55.3.5 |Ribonuclease H-like motif |Ribonuclease H-like |DnaQ-like 3'-5' exonuclease |Exonuclease domain of phi29 DNA polymerase |Bacteriophage phi-29 [TaxId: 10756]
d1g0da3 : (PRO585) (GLY617) [view usage] : b.1.5.1 |Immunoglobulin-like beta-sandwich |Transglutaminase, two C-terminal domains |Transglutaminase, two C-terminal domains |Transglutaminase, two C-terminal domains |Red sea bream (Chrysophrys major) [TaxId: 143350]
d1faya_ : (GLY64) (VAL122) [view usage] : b.29.1.1 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Legume lectins |Legume lectin |Winged bean (Psophocarpus tetragonolobus), acidic lectin [TaxId: 3891]
d1p6ge_ : (GLU9) (ARG53) [view usage] : i.1.1.1 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Ribosome complexes |70S ribosome functional complex |Escherichia coli [TaxId: 562]
d2wbjg1 : (ASN30) (SER58) [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1xbpa2 : (ASN76) (GLU109) [view usage] : b.40.4.5 |OB-fold |Nucleic acid-binding proteins |Cold shock DNA-binding domain-like |N-terminal domain of ribosomal protein L2 |Deinococcus radiodurans [TaxId: 1299]
d2ifwa_ : (GLN180) (TYR205) [view usage] : b.29.1.20 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Peptidase A4 |automated matches |Fungus (Scytalidium lignicola) [TaxId: 5539]
d1gm5a2 : (GLY172) (PRO200) [view usage] : b.40.4.9 |OB-fold |Nucleic acid-binding proteins |RecG "wedge" domain |RecG "wedge" domain |Thermotoga maritima [TaxId: 2336]
d1xtea_ : (CYS7) (ARG44) [view usage] : d.189.1.1 |PX domain |PX domain |PX domain |Serine/threonine-protein kinase Sgk3, Cisk |Mouse (Mus musculus) [TaxId: 10090]
d2ov9a1 : (LEU172) (VAL208) [view usage] : d.38.1.5 |Thioesterase/thiol ester dehydrase-isomerase |Thioesterase/thiol ester dehydrase-isomerase |PaaI/YdiI-like |Hypothetical protein RHA1_ro05818 |Rhodococcus sp. RHA1 [TaxId: 101510]
d4g8ea1 : (GLN2) (GLY32) [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1xhxa1 : (ASN77) (ASP121) [view usage] : c.55.3.5 |Ribonuclease H-like motif |Ribonuclease H-like |DnaQ-like 3'-5' exonuclease |Exonuclease domain of phi29 DNA polymerase |Bacteriophage phi-29 [TaxId: 10756]
d1ut2b_ : (THR7) (ASP61) [view usage] : b.2.3.6 |Common fold of diphtheria toxin/transcription factors/cytochrome f |Bacterial adhesins |Dr-family adhesin |DraA/Afimbrial adhesin Afa-III |Escherichia coli [TaxId: 562]
d3vl9a_ : (SER83) (TRP123) [view usage] : b.29.1.0 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |automated matches |automated matches |Fungus (Aspergillus aculeatus) [TaxId: 5053]
d1evua4 : (LYS366) (SER413) [view usage] : d.3.1.4 |Cysteine proteinases |Cysteine proteinases |Transglutaminase core |Transglutaminase catalytic domain |Human (Homo sapiens), blood isozyme [TaxId: 9606]
d2c35b1 : (GLY82) (SER109) [view usage] : b.40.4.5 |OB-fold |Nucleic acid-binding proteins |Cold shock DNA-binding domain-like |C-terminal domain of RNA polymerase II subunit RBP7 (RpoE) |Human (Homo sapiens) [TaxId: 9606]
d2yd1a2 : (PHE139) (ASN176) [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Fruit fly (Drosophila melanogaster) [TaxId: 7227]
d3ul5c_ : (HIS58) (LEU97) [view usage] : d.17.1.0 |Cystatin-like |Cystatin/monellin |automated matches |automated matches |Saccharum officinarum [TaxId: 4547]
d1biha3 : (GLN216) (TYR246) [view usage] : b.1.1.4 |Immunoglobulin-like beta-sandwich |Immunoglobulin |I set domains |Hemolin |Moth (Hyalophora cecropia) [TaxId: 7123]
d2f8oa_ : (SER61) (LYS94) [view usage] : b.1.1.2 |Immunoglobulin-like beta-sandwich |Immunoglobulin |C1 set domains (antibody constant domain-like) |beta2-microglobulin |Human (Homo sapiens) [TaxId: 9606]
d3j39a_ : (ILE41) (LEU75) [view usage] : i.1.1.1 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Ribosome complexes |Eukaryotic, cytoplasmic (80S ribosome functional complex) |Drosophila melanogaster [TaxId: 7227]
d1s1qa_ : (LEU52) (THR92) [view usage] : d.20.1.2 |UBC-like |UBC-like |UEV domain |Tumor susceptibility gene 101 (TSG101) |Human (Homo sapiens) [TaxId: 9606]
d1kful3 : (HIS262) (TRP293) [view usage] : d.3.1.3 |Cysteine proteinases |Cysteine proteinases |Calpain large subunit, catalytic domain (domain II) |Calpain large subunit, catalytic domain (domain II) |Human (Homo sapiens), M-type [TaxId: 9606]
d1lpqa3 : (ILE382) (MET428) [view usage] : e.15.1.1 |Eukaryotic DNA topoisomerase I, N-terminal DNA-binding fragment |Eukaryotic DNA topoisomerase I, N-terminal DNA-binding fragment |Eukaryotic DNA topoisomerase I, N-terminal DNA-binding fragment |Eukaryotic DNA topoisomerase I, N-terminal DNA-binding fragment |Human (Homo sapiens) [TaxId: 9606]
d1ldsa_ : (MET0) (LEU39) [view usage] : b.1.1.2 |Immunoglobulin-like beta-sandwich |Immunoglobulin |C1 set domains (antibody constant domain-like) |beta2-microglobulin |Human (Homo sapiens) [TaxId: 9606]
d3v98a2 : (THR301) (PRO340) [view usage] : a.119.1.0 |Lipoxigenase |Lipoxigenase |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3qnfa1 : (LEU115) (ASN154) [view usage] : b.98.1.0 |Zn aminopeptidase N-terminal domain |Zn aminopeptidase N-terminal domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1nfaa_ : (ASN112) (SER169) [view usage] : b.2.5.3 |Common fold of diphtheria toxin/transcription factors/cytochrome f |p53-like transcription factors |Rel/Dorsal transcription factors, DNA-binding domain |T-cell transcription factor NFAT1 (NFATC), DNA-binding domain |Human (Homo sapiens) [TaxId: 9606]
d2f9ca1 : (LYS3) (GLY45) [view usage] : b.81.1.7 |Single-stranded left-handed beta-helix |Trimeric LpxA-like enzymes |YdcK-like |Hypothetical protein YdcK |Salmonella enterica [TaxId: 28901]
d3k2mc_ : (THR9) (GLY42) [view usage] : b.1.2.0 |Immunoglobulin-like beta-sandwich |Fibronectin type III |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1wlga_ : (LYS284) (VAL310) [view usage] : b.152.1.1 |Flagellar hook protein flgE |Flagellar hook protein flgE |Flagellar hook protein flgE |Flagellar hook protein flgE |Salmonella typhimurium [TaxId: 90371]
d2vtuj1 : (ASP145) (ARG177) [view usage] : d.85.1.1 |RNA bacteriophage capsid protein |RNA bacteriophage capsid protein |RNA bacteriophage capsid protein |MS2 virus coat protein |Bacteriophage MS2 [TaxId: 12022]
d1sbfa_ : (GLY65) (VAL123) [view usage] : b.29.1.1 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Legume lectins |Legume lectin |Soybean (Glycine max) [TaxId: 3847]
d3irba_ : (ASP79) (TYR119) [view usage] : b.40.4.15 |OB-fold |Nucleic acid-binding proteins |SSO2064-like |Hypothetical protein SSO2064 |Sulfolobus solfataricus [TaxId: 2287]
d2rala2 : (SER535) (ILE581) [view usage] : b.2.3.4 |Common fold of diphtheria toxin/transcription factors/cytochrome f |Bacterial adhesins |Fibrinogen-binding domain |Fibrinogen-binding adhesin SdrG |Staphylococcus epidermidis [TaxId: 1282]
d1epfa2 : (LYS102) (HIS134) [view usage] : b.1.1.4 |Immunoglobulin-like beta-sandwich |Immunoglobulin |I set domains |Neural cell adhesion molecule (NCAM) |Norway rat (Rattus norvegicus) [TaxId: 10116]
d1cmoa_ : (GLN127) (ARG164) [view usage] : b.2.5.6 |Common fold of diphtheria toxin/transcription factors/cytochrome f |p53-like transcription factors |RUNT domain |Acute myeloid leukemia 1 protein (AML1), RUNT domain |Human (Homo sapiens) [TaxId: 9606]
d1r17b2 : (SER535) (ILE581) [view usage] : b.2.3.4 |Common fold of diphtheria toxin/transcription factors/cytochrome f |Bacterial adhesins |Fibrinogen-binding domain |Fibrinogen-binding adhesin SdrG |Staphylococcus epidermidis [TaxId: 1282]
d1nkwa_ : (ASN76) (TYR104) [view usage] : i.1.1.2 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Large subunit |Prokaryotic (50S subunit) |Deinococcus radiodurans [TaxId: 1299]
d2ex3a1 : (ASN77) (ASP121) [view usage] : c.55.3.5 |Ribonuclease H-like motif |Ribonuclease H-like |DnaQ-like 3'-5' exonuclease |Exonuclease domain of phi29 DNA polymerase |Bacteriophage phi-29 [TaxId: 10756]
d1qhwa_ : (LEU291) (PRO322) [view usage] : d.159.1.1 |Metallo-dependent phosphatases |Metallo-dependent phosphatases |Purple acid phosphatase-like |Mammalian purple acid phosphatase |Norway rat (Rattus norvegicus) [TaxId: 10116]
d3nn8b_ : (ALA19) (LYS55) [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |automated matches |Mouse (Mus musculus) [TaxId: 10090]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
b.68, b.80, a.119, b.81, d.159, i.1, b.29, b.30, b.40, c.55, d.3, b.2, b.1, d.20, d.17, d.38, d.85, b.3, d.227, b.98,
b.152, d.189, d.190, e.15