Tableau information
Concept source: d1oi1a2 amino acid (a.a.) range (TYR187)(LYS218)
nSSEs in this Concept: 4
String of secondary struct.elems. (SSEs) defining this concept: EEEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(TYR187) (PRO191) E1
(PRO191) (GLY199) E2
(ASP200) (PHE206) E3
(ALA212) (LYS218) E4
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 -79.9° E2
E3 93.1° 152.8° E3
E4 -88.5° -46.2° 160.7°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±13.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d2a8ka1 : (TYR57) (THR90) [view usage] : d.243.1.2 |Colicin D/E5 nuclease domain |Colicin D/E5 nuclease domain |Colicin E5 nuclease domain |Colicin E5 |Escherichia coli [TaxId: 562]
d3bbnl1 : (PRO28) (GLY69) [view usage] : i.1.1.1 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Ribosome complexes |Eukaryotic, chloroplast (70S ribosome functional complex) |Spinach (Spinacia oleracea) [TaxId: 3562]
d1wcmg_ : (VAL86) (THR111) [view usage] : i.8.1.1 |RNA polymerase |RNA polymerase |RNA polymerase |Complete 12-subunit RNA polymerase II complex |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1wwbx_ : (THR296) (VAL336) [view usage] : b.1.1.4 |Immunoglobulin-like beta-sandwich |Immunoglobulin |I set domains |Ligand binding domain of trkB receptor |Human (Homo sapiens) [TaxId: 9606]
d3zpya_ : (SER372) (VAL407) [view usage] : b.29.1.0 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |automated matches |automated matches |Zobellia galactanivorans [TaxId: 63186]
d1k3ra1 : (GLY103) (ARG131) [view usage] : b.40.4.10 |OB-fold |Nucleic acid-binding proteins |Hypothetical protein MTH1 (MT0001), insert domain |Hypothetical protein MTH1 (MT0001), insert domain |Methanobacterium thermoautotrophicum [TaxId: 145262]
d2r7da1 : (GLU404) (GLN431) [view usage] : b.40.4.5 |OB-fold |Nucleic acid-binding proteins |Cold shock DNA-binding domain-like |Ribonuclease II family protein DR0020 |Deinococcus radiodurans [TaxId: 1299]
d1un9a4 : (LEU193) (THR230) [view usage] : c.119.1.2 |DAK1/DegV-like |DAK1/DegV-like |DAK1 |Dihydroxyacetone kinase |Citrobacter freundii [TaxId: 546]
d3rlna2 : (GLY689) (GLY720) [view usage] : b.40.16.1 |OB-fold |HIN-2000 domain-like |HIN-200/IF120x domain |Gamma-interferon-inducible protein Ifi-16 |Human (Homo sapiens) [TaxId: 9606]
d2bjqa2 : (GLU5) (PRO60) [view usage] : b.169.1.1 |MFPT repeat-like |MFPT repeat-like |MFPT repeat |Sperm motility protein MFP2 |Pig roundworm (Ascaris suum), isoform A [TaxId: 6253]
d3rloa2 : (GLY689) (GLY720) [view usage] : b.40.16.1 |OB-fold |HIN-2000 domain-like |HIN-200/IF120x domain |Gamma-interferon-inducible protein Ifi-16 |Human (Homo sapiens) [TaxId: 9606]
d2gska_ : (LYS452) (TRP509) [view usage] : f.4.3.3 |Transmembrane beta-barrels |Porins |Ligand-gated protein channel |Outer membrane cobalamin transporter BtuB |Escherichia coli [TaxId: 562]
d1mjca_ : (GLY3) (HIS33) [view usage] : b.40.4.5 |OB-fold |Nucleic acid-binding proteins |Cold shock DNA-binding domain-like |Major cold shock protein |Escherichia coli [TaxId: 562]
d1ojoa3 : (THR632) (LEU673) [view usage] : b.30.5.2 |Supersandwich |Galactose mutarotase-like |Hyaluronate lyase-like, central domain |Hyaluronate lyase |Pneumococcus (Streptococcus pneumoniae) [TaxId: 1313]
d2qdlb_ : (GLU33) (ASP65) [view usage] : b.40.7.0 |OB-fold |CheW-like |automated matches |automated matches |Thermoanaerobacter tengcongensis [TaxId: 273068]
d1ne3a_ : (ASP3) (ASN42) [view usage] : b.40.4.5 |OB-fold |Nucleic acid-binding proteins |Cold shock DNA-binding domain-like |Ribosomal protein S28e |Methanobacterium thermoautotrophicum [TaxId: 145262]
d2qdla_ : (HIS32) (ASP65) [view usage] : b.40.7.0 |OB-fold |CheW-like |automated matches |automated matches |Thermoanaerobacter tengcongensis [TaxId: 273068]
d4ki5m_ : (SER2193) (PHE2234) [view usage] : b.18.1.2 |Galactose-binding domain-like |Galactose-binding domain-like |Discoidin domain (FA58C, coagulation factor 5/8 C-terminal domain) |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3vyua_ : (LEU3) (LEU30) [view usage] : b.40.14.1 |OB-fold |HupF/HypC-like |HupF/HypC-like |Hydrogenase expression/formation protein HypC |Thermococcus kodakaraensis [TaxId: 311400]
d2q3nb1 : (GLY204) (PHE267) [view usage] : b.42.2.1 |beta-Trefoil |Ricin B-like lectins |Ricin B-like |Agglutinin-1 chain B |Abrus precatorius [TaxId: 3816]
d2ja9a1 : (PHE71) (SER98) [view usage] : b.40.4.5 |OB-fold |Nucleic acid-binding proteins |Cold shock DNA-binding domain-like |S1-domain of exosome component 3 (RRP40) |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1hwnb1 : (GLY2) (SER59) [view usage] : b.42.2.1 |beta-Trefoil |Ricin B-like lectins |Ricin B-like |Plant cytotoxin B-chain (lectin) |Sambucus ebulus, ebulin [TaxId: 28503]
d1kcga_ : (SER151) (MET184) [view usage] : d.169.1.1 |C-type lectin-like |C-type lectin-like |C-type lectin domain |NK cell-activating receptor nkg2d |Human (Homo sapiens) [TaxId: 9606]
d2ix0a3 : (THR562) (PRO590) [view usage] : b.40.4.5 |OB-fold |Nucleic acid-binding proteins |Cold shock DNA-binding domain-like |Exoribonuclease 2, RNB |Escherichia coli [TaxId: 562]
d2cmzb_ : (ASN180) (GLY216) [view usage] : e.76.1.2 |Viral glycoprotein ectodomain-like |Viral glycoprotein ectodomain-like |Spike glycoprotein-like |automated matches |Vesicular stomatitis indiana virus [TaxId: 11277]
d1uoya_ : (ASP10) (GLY50) [view usage] : g.3.19.1 |Knottins (small inhibitors, toxins, lectins) |Bubble protein |Bubble protein |Bubble protein |Penicillium brevicompactum [TaxId: 5074]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
i.1, b.29, b.30, f.4, b.40, b.18, d.169, b.1, b.42, b.34, i.8, c.119, e.76, g.3, b.169, d.243