Tableau information
Concept source: d2qwna1 amino acid (a.a.) range (LYS3)(SER40)
nSSEs in this Concept: 4
String of secondary struct.elems. (SSEs) defining this concept: EEEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(LYS3) (THR13) E1
(TYR15) (PHE21) E2
(LYS25) (ASN31) E3
(ARG36) (SER40) E4
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 157.0° E2
E3 -60.6° 141.8° E3
E4 -55.5° 134.6° 56.7°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±9.2° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1ovza1 : (PRO62) (VAL97) [view usage] : b.1.1.4 |Immunoglobulin-like beta-sandwich |Immunoglobulin |I set domains |Ig alpha Fc receptor, FCARI (CD89) |Human (Homo sapiens) [TaxId: 9606]
d2qqia1 : (ARG496) (ASN543) [view usage] : b.18.1.2 |Galactose-binding domain-like |Galactose-binding domain-like |Discoidin domain (FA58C, coagulation factor 5/8 C-terminal domain) |C2 domain of factor VIII |Human (Homo sapiens) [TaxId: 9606]
d3gl1b1 : (ILE10) (SER42) [view usage] : c.55.1.0 |Ribonuclease H-like motif |Actin-like ATPase domain |automated matches |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d3kwca_ : (SER5) (GLY36) [view usage] : b.81.1.0 |Single-stranded left-handed beta-helix |Trimeric LpxA-like enzymes |automated matches |automated matches |Thermosynechococcus elongatus [TaxId: 197221]
d3kwcb_ : (SER5) (GLY36) [view usage] : b.81.1.0 |Single-stranded left-handed beta-helix |Trimeric LpxA-like enzymes |automated matches |automated matches |Thermosynechococcus elongatus [TaxId: 197221]
d1vc8a1 : (GLU2) (PRO35) [view usage] : d.113.1.1 |Nudix |Nudix |MutT-like |AP6A hydrolase Ndx1 |Thermus thermophilus [TaxId: 274]
d2ykna1 : (PRO225) (LEU246) [view usage] : e.8.1.2 |DNA/RNA polymerases |DNA/RNA polymerases |Reverse transcriptase |automated matches |Human immunodeficiency virus type 1 bh10 [TaxId: 11678]
d2r6ia1 : (THR38) (SER68) [view usage] : d.381.1.1 |ATP12-like |ATP12-like |ATP12-like |Uncharacterized protein Atu1473 |Agrobacterium tumefaciens [TaxId: 358]
d1h09a1 : (THR201) (SER242) [view usage] : b.109.1.1 |beta-hairpin stack |Cell wall binding repeat |Cell wall binding repeat |C-terminal domain of endolysin |Bacteriophage cp-1 [TaxId: 10747]
d3i33a1 : (ILE8) (SER41) [view usage] : c.55.1.1 |Ribonuclease H-like motif |Actin-like ATPase domain |Actin/HSP70 |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3fe1a1 : (MET5) (SER42) [view usage] : c.55.1.0 |Ribonuclease H-like motif |Actin-like ATPase domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3n1pc_ : (VAL713) (PRO754) [view usage] : b.1.2.1 |Immunoglobulin-like beta-sandwich |Fibronectin type III |Fibronectin type III |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3eksa1 : (LEU8) (PRO38) [view usage] : c.55.1.1 |Ribonuclease H-like motif |Actin-like ATPase domain |Actin/HSP70 |automated matches |Fruit fly (Drosophila melanogaster) [TaxId: 7227]
d3tewa2 : (GLN61) (GLU109) [view usage] : b.179.1.1 |Anthrax protective antigen N-terminal-like |PA14-like |PA14 |PA14 |Bacillus anthracis
d1im9d2 : (THR170) (THR200) [view usage] : b.1.1.4 |Immunoglobulin-like beta-sandwich |Immunoglobulin |I set domains |Killer cell inhibitory receptor |Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]
d1c16a2 : (SER92) (ASN150) [view usage] : d.19.1.1 |MHC antigen-recognition domain |MHC antigen-recognition domain |MHC antigen-recognition domain |Class I MHC homolog |Mouse (Mus musculus), t22 [TaxId: 10090]
d1ze3h_ : (ASN236) (GLN279) [view usage] : b.2.3.2 |Common fold of diphtheria toxin/transcription factors/cytochrome f |Bacterial adhesins |Pilus subunits |Mannose-specific adhesin FimH |Escherichia coli [TaxId: 562]
d1qqma1 : (VAL7) (SER40) [view usage] : c.55.1.1 |Ribonuclease H-like motif |Actin-like ATPase domain |Actin/HSP70 |Heat shock protein 70kDa, ATPase fragment |Cow (Bos taurus) [TaxId: 9913]
d1xbrb_ : (GLY154) (THR194) [view usage] : b.2.5.4 |Common fold of diphtheria toxin/transcription factors/cytochrome f |p53-like transcription factors |T-box |T domain from Brachyury transcription factor |African clawed frog (Xenopus laevis) [TaxId: 8355]
d3rfza2 : (ASN236) (GLN279) [view usage] : b.2.3.2 |Common fold of diphtheria toxin/transcription factors/cytochrome f |Bacterial adhesins |Pilus subunits |automated matches |Escherichia coli [TaxId: 562]
d2o3bb_ : (GLN103) (THR135) [view usage] : d.221.1.1 |Nuclease A inhibitor (NuiA) |Nuclease A inhibitor (NuiA) |Nuclease A inhibitor (NuiA) |automated matches |Nostoc sp. PCC 7120 [TaxId: 103690]
d1naea_ : (SER123) (LYS148) [view usage] : b.18.1.10 |Galactose-binding domain-like |Galactose-binding domain-like |Family 6 carbohydrate binding module, CBM6 |Putative xylanase |Clostridium stercorarium [TaxId: 1510]
d2je8a3 : (ILE681) (PHE714) [view usage] : b.1.4.1 |Immunoglobulin-like beta-sandwich |beta-Galactosidase/glucuronidase domain |beta-Galactosidase/glucuronidase domain |Beta-mannosidase, domains 2, 4 and 5 |Bacteroides thetaiotaomicron [TaxId: 818]
d3cqxa1 : (VAL7) (SER40) [view usage] : c.55.1.1 |Ribonuclease H-like motif |Actin-like ATPase domain |Actin/HSP70 |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d3gl1a1 : (ILE10) (SER42) [view usage] : c.55.1.0 |Ribonuclease H-like motif |Actin-like ATPase domain |automated matches |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1ex0b3 : (ILE632) (ASP668) [view usage] : b.1.5.1 |Immunoglobulin-like beta-sandwich |Transglutaminase, two C-terminal domains |Transglutaminase, two C-terminal domains |Transglutaminase, two C-terminal domains |Human (Homo sapiens), blood isozyme [TaxId: 9606]
d2q3za3 : (ILE589) (GLY626) [view usage] : b.1.5.1 |Immunoglobulin-like beta-sandwich |Transglutaminase, two C-terminal domains |Transglutaminase, two C-terminal domains |Transglutaminase, two C-terminal domains |Human (Homo sapiens), tissue isozyme [TaxId: 9606]
d1co1a_ : (ARG99) (ASP131) [view usage] : b.2.5.6 |Common fold of diphtheria toxin/transcription factors/cytochrome f |p53-like transcription factors |RUNT domain |Acute myeloid leukemia 1 protein (AML1), RUNT domain |Human (Homo sapiens) [TaxId: 9606]
d1vc9a1 : (GLU2) (PRO35) [view usage] : d.113.1.1 |Nudix |Nudix |MutT-like |AP6A hydrolase Ndx1 |Thermus thermophilus [TaxId: 274]
d4ktya4 : (THR628) (GLY669) [view usage] : b.1.5.0 |Immunoglobulin-like beta-sandwich |Transglutaminase, two C-terminal domains |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1zj8a4 : (ASP224) (PRO262) [view usage] : d.134.1.1 |Nitrite and sulphite reductase 4Fe-4S domain-like |Nitrite and sulphite reductase 4Fe-4S domain-like |Nitrite and sulphite reductase 4Fe-4S domain-like |Sulfite reductase NirA |Mycobacterium tuberculosis [TaxId: 1773]
d2h28a1 : (HIS88) (ASN122) [view usage] : d.110.8.1 |Profilin-like |YeeU-like |YagB/YeeU/YfjZ-like |Hypothetical protein YeeU |Escherichia coli [TaxId: 562]
d2ok5a4 : (GLY21) (SER53) [view usage] : g.18.1.1 |Complement control module/SCR domain |Complement control module/SCR domain |Complement control module/SCR domain |Complement factor B |Human (Homo sapiens) [TaxId: 9606]
d3d2eb1 : (ILE7) (SER40) [view usage] : c.55.1.1 |Ribonuclease H-like motif |Actin-like ATPase domain |Actin/HSP70 |Heat shock protein 70kDa, ATPase fragment |Human (Homo sapiens) [TaxId: 9606]
d2v2ta1 : (PRO143) (HIS193) [view usage] : b.2.5.0 |Common fold of diphtheria toxin/transcription factors/cytochrome f |p53-like transcription factors |automated matches |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d2vzoa4 : (HIS677) (LEU709) [view usage] : b.1.4.0 |Immunoglobulin-like beta-sandwich |beta-Galactosidase/glucuronidase domain |automated matches |automated matches |Amycolatopsis orientalis [TaxId: 31958]
d3qfua1 : (ILE53) (SER86) [view usage] : c.55.1.0 |Ribonuclease H-like motif |Actin-like ATPase domain |automated matches |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1al0g_ : (ASP45) (ASP82) [view usage] : b.121.5.1 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |ssDNA viruses |Microviridae-like VP |Microvirus capsid proteins |Bacteriophage phi-X174 [TaxId: 10847]
d1xsaa_ : (LEU8) (PRO52) [view usage] : d.113.1.1 |Nudix |Nudix |MutT-like |Diadenosine tetraphosphate hydrolase (Ap4A hydrolase) |Human (Homo sapiens) [TaxId: 9606]
d1uy2a_ : (SER118) (SER144) [view usage] : b.18.1.10 |Galactose-binding domain-like |Galactose-binding domain-like |Family 6 carbohydrate binding module, CBM6 |Putative xylanase |Clostridium stercorarium [TaxId: 1510]
d2enja_ : (GLY0) (PRO55) [view usage] : b.7.1.0 |C2 domain-like |C2 domain (Calcium/lipid-binding domain, CaLB) |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3r9ya_ : (GLY55) (PRO101) [view usage] : d.18.1.0 |ssDNA-binding transcriptional regulator domain |ssDNA-binding transcriptional regulator domain |automated matches |automated matches |Potato (Solanum tuberosum) [TaxId: 4113]
d1f13a3 : (ILE632) (GLY669) [view usage] : b.1.5.1 |Immunoglobulin-like beta-sandwich |Transglutaminase, two C-terminal domains |Transglutaminase, two C-terminal domains |Transglutaminase, two C-terminal domains |Human (Homo sapiens), blood isozyme [TaxId: 9606]
d1ngga1 : (LYS3) (SER40) [view usage] : c.55.1.1 |Ribonuclease H-like motif |Actin-like ATPase domain |Actin/HSP70 |Heat shock protein 70kDa, ATPase fragment |Cow (Bos taurus) [TaxId: 9913]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
e.8, b.81, c.55, b.18, b.121, b.2, b.1, d.110, b.179, d.19, d.134, b.109, b.7, d.113, g.18, d.18, d.381, d.221