Tableau information
Concept source: d4jqia1 amino acid (a.a.) range (VAL8)(ASP44)
nSSEs in this Concept: 4
String of secondary struct.elems. (SSEs) defining this concept: EEEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(VAL8) (SER13) E1
(LYS17) (GLY23) E2
(ARG25) (ILE31) E3
(ASP32) (ASP44) E4
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 156.5° E2
E3 -116.3° 46.3° E3
E4 -54.1° 148.9° -155.0°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±6.5° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d4jqia1 : (VAL8) (ASP44) [view usage] : b.1.18.11 |Immunoglobulin-like beta-sandwich |E set domains |Arrestin/Vps26-like |Arrestin |Norway rat (Rattus norvegicus) [TaxId: 10116]
d3d0ab_ : (ARG202) (CYS238) [view usage] : b.2.5.2 |Common fold of diphtheria toxin/transcription factors/cytochrome f |p53-like transcription factors |p53 DNA-binding domain-like |p53 tumor suppressor, DNA-binding domain |Human (Homo sapiens) [TaxId: 9606]
d1cf1c1 : (PRO8) (ASP42) [view usage] : b.1.18.11 |Immunoglobulin-like beta-sandwich |E set domains |Arrestin/Vps26-like |Arrestin |Cow (Bos taurus), visual arrestin [TaxId: 9913]
d1g4ma1 : (GLY5) (ASP44) [view usage] : b.1.18.11 |Immunoglobulin-like beta-sandwich |E set domains |Arrestin/Vps26-like |Arrestin |Cow (Bos taurus), beta-arrestin 1 [TaxId: 9913]
d1jsya1 : (VAL8) (ASP44) [view usage] : b.1.18.11 |Immunoglobulin-like beta-sandwich |E set domains |Arrestin/Vps26-like |Arrestin |Cow (Bos taurus), beta-arrestin 1 [TaxId: 9913]
d1fgub2 : (LYS324) (GLY362) [view usage] : b.40.4.3 |OB-fold |Nucleic acid-binding proteins |Single strand DNA-binding domain, SSB |Replication protein A 70 KDa subunit (RPA70) |Human (Homo sapiens) [TaxId: 9606]
d3f3hb_ : (THR22) (VAL54) [view usage] : b.1.21.1 |Immunoglobulin-like beta-sandwich |Fungal immunomodulatory protein, FIP |Fungal immunomodulatory protein, FIP |automated matches |Ganoderma lucidum [TaxId: 5315]
d1cf1a1 : (ILE12) (ASP42) [view usage] : b.1.18.11 |Immunoglobulin-like beta-sandwich |E set domains |Arrestin/Vps26-like |Arrestin |Cow (Bos taurus), visual arrestin [TaxId: 9913]
d1g4ra1 : (ARG7) (ASP44) [view usage] : b.1.18.11 |Immunoglobulin-like beta-sandwich |E set domains |Arrestin/Vps26-like |Arrestin |Cow (Bos taurus), beta-arrestin 1 [TaxId: 9913]
d2wtra1 : (GLY5) (ASP44) [view usage] : b.1.18.11 |Immunoglobulin-like beta-sandwich |E set domains |Arrestin/Vps26-like |Arrestin |Cow (Bos taurus), beta-arrestin 1 [TaxId: 9913]
d1suja1 : (VAL7) (ASP43) [view usage] : b.1.18.0 |Immunoglobulin-like beta-sandwich |E set domains |automated matches |automated matches |Ambystoma tigrinum [TaxId: 8305]
d1ayra1 : (ILE12) (ASP42) [view usage] : b.1.18.11 |Immunoglobulin-like beta-sandwich |E set domains |Arrestin/Vps26-like |Arrestin |Cow (Bos taurus), visual arrestin [TaxId: 9913]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
b.40, b.2, b.1