Tableau information
Concept source: d1gofa2 amino acid (a.a.) range (ASN66)(ASP108)
nSSEs in this Concept: 4
String of secondary struct.elems. (SSEs) defining this concept: EEEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(ASN66) (PRO72) E1
(ARG84) (SER90) E2
(THR94) (SER98) E3
(GLY103) (ASP108) E4
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 138.1° E2
E3 -94.8° 125.7° E3
E4 -34.0° 126.4° 88.3°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±13.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d2zhra_ : (THR59) (LEU84) [view usage] : b.50.1.2 |Acid proteases |Acid proteases |Pepsin-like |beta-secretase (memapsin) |Human (Homo sapiens) [TaxId: 9606]
d1l3wa1 : (GLY58) (VAL98) [view usage] : b.1.6.1 |Immunoglobulin-like beta-sandwich |Cadherin-like |Cadherin |C-cadherin ectodomain |African clawed frog (Xenopus laevis) [TaxId: 8355]
d1ujta_ : (ARG75) (THR111) [view usage] : b.1.2.1 |Immunoglobulin-like beta-sandwich |Fibronectin type III |Fibronectin type III |KIAA1568 protein |Human (Homo sapiens) [TaxId: 9606]
d3tewa2 : (GLY111) (LYS157) [view usage] : b.179.1.1 |Anthrax protective antigen N-terminal-like |PA14-like |PA14 |PA14 |Bacillus anthracis
d1rxla_ : (GLY94) (THR141) [view usage] : b.2.3.6 |Common fold of diphtheria toxin/transcription factors/cytochrome f |Bacterial adhesins |Dr-family adhesin |DraA/Afimbrial adhesin Afa-III |Escherichia coli [TaxId: 562]
d2hevf1 : (ALA141) (HIS174) [view usage] : b.22.1.1 |TNF-like |TNF-like |TNF-like |Tumor necrosis factor ligand superfamily member 4, OX40L |Human (Homo sapiens) [TaxId: 9606]
d1qwjb_ : (ASP165) (GLU211) [view usage] : c.68.1.13 |Nucleotide-diphospho-sugar transferases |Nucleotide-diphospho-sugar transferases |Cytidylytransferase |CMP acylneuraminate synthetase |Mouse (Mus musculus) [TaxId: 10090]
d1q55a_ : (GLY58) (VAL98) [view usage] : i.20.1.1 |Ep-cadherin |Ep-cadherin |Ep-cadherin |Ep-cadherin |Mouse (Mus musculus) [TaxId: 10090]
d2wq8a1 : (ASN66) (ASP108) [view usage] : b.18.1.0 |Galactose-binding domain-like |Galactose-binding domain-like |automated matches |automated matches |Fusarium graminearum (Gibberella zeae) [TaxId: 5518]
d2ofoa1 : (ILE230) (PHE262) [view usage] : c.37.1.11 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |RecA protein-like (ATPase-domain) |automated matches |Mycobacterium smegmatis [TaxId: 1772]
d2fwsa1 : (THR436) (ILE496) [view usage] : b.1.27.1 |Immunoglobulin-like beta-sandwich |CalX-like |CalX-beta domain |Sodium/calcium exchanger 1 |Dog (Canis familiaris) [TaxId: 9615]
d1q1pa1 : (LEU60) (VAL98) [view usage] : b.1.6.1 |Immunoglobulin-like beta-sandwich |Cadherin-like |Cadherin |E-cadherin (epithelial) |Mouse (Mus musculus) [TaxId: 10090]
d2tmpa_ : (VAL24) (THR65) [view usage] : b.40.3.1 |OB-fold |TIMP-like |Tissue inhibitor of metalloproteinases, TIMP |TIMP-2 |Human (Homo sapiens) [TaxId: 9606]
d1aono_ : (MET1) (ASN45) [view usage] : b.35.1.1 |GroES-like |GroES-like |GroES |Chaperonin-10 (GroES) |Escherichia coli [TaxId: 562]
d3o5sa_ : (THR203) (LYS241) [view usage] : b.29.1.2 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Glycosyl hydrolases family 16 |automated matches |Bacillus subtilis [TaxId: 1423]
d4ktya1 : (ARG140) (PHE184) [view usage] : b.1.18.0 |Immunoglobulin-like beta-sandwich |E set domains |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1qwja_ : (ASP165) (GLU211) [view usage] : c.68.1.13 |Nucleotide-diphospho-sugar transferases |Nucleotide-diphospho-sugar transferases |Cytidylytransferase |CMP acylneuraminate synthetase |Mouse (Mus musculus) [TaxId: 10090]
d1n9ea2 : (ARG121) (PHE169) [view usage] : d.17.2.1 |Cystatin-like |Amine oxidase N-terminal region |Amine oxidase N-terminal region |Lysyl oxidase PplO, domains 1 and 2 |Yeast (Pichia pastoris) [TaxId: 4922]
d4nwla_ : (ASP103) (CYS145) [view usage] : b.47.1.3 |Trypsin-like serine proteases |Trypsin-like serine proteases |Viral proteases |automated matches |Hepatitis C virus subtype 1a [TaxId: 31646]
d1su2a_ : (GLU12) (ASP54) [view usage] : d.113.1.1 |Nudix |Nudix |MutT-like |Hypothetical protein DR1025 |Deinococcus radiodurans [TaxId: 1299]
d3qrba1 : (GLY58) (VAL98) [view usage] : b.1.6.1 |Immunoglobulin-like beta-sandwich |Cadherin-like |Cadherin |E-cadherin (epithelial) |Mouse (Mus musculus) [TaxId: 10090]
d3ussa_ : (GLY95) (PRO128) [view usage] : b.82.1.19 |Double-stranded beta-helix |RmlC-like cupins |Cysteine dioxygenase type I |automated matches |Pseudomonas aeruginosa [TaxId: 208964]
d3cu7a3 : (ASN257) (ASN294) [view usage] : b.1.29.4 |Immunoglobulin-like beta-sandwich |Macroglobulin |Complement C3 MG3-like |Complement C5 MG3 |Human (Homo sapiens) [TaxId: 9606]
d1ar1c_ : (LEU79) (VAL116) [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |Immunoglobulin heavy chain variable domain, VH |Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
b.82, c.68, b.29, b.47, b.50, b.40, c.37, b.18, b.2, b.1, d.17, b.179, b.22, d.113, i.20, b.35