Tableau information
Concept source: d1tp0a_ amino acid (a.a.) range (VAL3)(LEU29)
nSSEs in this Concept: 4
String of secondary struct.elems. (SSEs) defining this concept: EEEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(VAL3) (ASN7) E1
(CYS8) (ASP12) E2
(GLN15) (MET20) E3
(GLU25) (LEU29) E4
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 63.2° E2
E3 -115.5° 118.1° E3
E4 38.3° -65.8° 151.6°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±13.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d4hjja_ : (TYR37) (PHE66) [view usage] : b.42.1.2 |beta-Trefoil |Cytokine |Interleukin-1 (IL-1) |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1ydua1 : (ASN74) (THR106) [view usage] : b.162.1.1 |At5g01610-like |At5g01610-like |At5g01610-like |Hypothetical protein At5g01610 |Thale cress (Arabidopsis thaliana) [TaxId: 3702]
d2fz2a_ : (ARG67) (GLY119) [view usage] : b.121.4.6 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Positive stranded ssRNA viruses |Tymoviridae-like VP |automated matches |Turnip yellow mosaic virus [TaxId: 12155]
d41bia_ : (VAL3) (LEU29) [view usage] : b.42.1.2 |beta-Trefoil |Cytokine |Interleukin-1 (IL-1) |Interleukin-1beta |Human (Homo sapiens) [TaxId: 9606]
d1v30a_ : (ALA29) (LYS52) [view usage] : d.269.1.1 |Gamma-glutamyl cyclotransferase-like |Gamma-glutamyl cyclotransferase-like |Gamma-glutamyl cyclotransferase-like |Hypothetical protein PH0828 |Pyrococcus horikoshii [TaxId: 53953]
d1npoc_ : (PRO53) (THR81) [view usage] : b.9.1.1 |Neurophysin II |Neurophysin II |Neurophysin II |Neurophysin II |Cow (Bos taurus) [TaxId: 9913]
d4ec7a_ : (CYS14) (GLU38) [view usage] : g.17.1.3 |Cystine-knot cytokines |Cystine-knot cytokines |Neurotrophin |automated matches |Chinese cobra (Naja atra) [TaxId: 8656]
d2c89a_ : (LEU213) (ALA241) [view usage] : d.166.1.1 |ADP-ribosylation |ADP-ribosylation |ADP-ribosylating toxins |automated matches |Clostridium botulinum [TaxId: 1491]
d1izda_ : (SER178) (ASP207) [view usage] : b.50.1.2 |Acid proteases |Acid proteases |Pepsin-like |Acid protease |Fungus (Aspergillus oryzae) [TaxId: 5062]
d1t45a_ : (LYS550) (HIS580) [view usage] : d.144.1.7 |Protein kinase-like (PK-like) |Protein kinase-like (PK-like) |Protein kinases, catalytic subunit |c-KIT receptor |Human (Homo sapiens) [TaxId: 9606]
d8i1ba_ : (GLN5) (ALA28) [view usage] : b.42.1.2 |beta-Trefoil |Cytokine |Interleukin-1 (IL-1) |Interleukin-1beta |Mouse (Mus musculus) [TaxId: 10090]
d1dbha2 : (GLY448) (LYS491) [view usage] : b.55.1.1 |PH domain-like barrel |PH domain-like |Pleckstrin-homology domain (PH domain) |Son of sevenless-1 (sos-1) |Human (Homo sapiens) [TaxId: 9606]
d4edba_ : (GLY263) (VAL294) [view usage] : b.19.1.2 |Viral protein domain |Viral protein domain |Influenza hemagglutinin headpiece |Hemagglutinin |Influenza A virus, different strains [TaxId: 11320]
d1zx8c_ : (GLU55) (PHE79) [view usage] : b.62.1.3 |Cyclophilin-like |Cyclophilin-like |TM1367-like |Hypothetical protein TM1367 |Thermotoga maritima [TaxId: 2336]
d1xd4a3 : (GLY448) (LYS491) [view usage] : b.55.1.1 |PH domain-like barrel |PH domain-like |Pleckstrin-homology domain (PH domain) |Son of sevenless-1 (sos-1) |Human (Homo sapiens) [TaxId: 9606]
d4depa_ : (VAL3) (LEU29) [view usage] : b.42.1.2 |beta-Trefoil |Cytokine |Interleukin-1 (IL-1) |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1ufga_ : (LEU21) (GLU48) [view usage] : b.1.16.1 |Immunoglobulin-like beta-sandwich |Lamin A/C globular tail domain |Lamin A/C globular tail domain |Lamin A/C globular tail domain |Mouse (Mus musculus) [TaxId: 10090]
d2nmua1 : (GLY104) (SER139) [view usage] : d.290.1.3 |AF0104/ALDC/Ptd012-like |AF0104/ALDC/Ptd012-like |AF0104-like |Hypothetical protein STM3071 |Salmonella typhimurium [TaxId: 90371]
d3r4sa2 : (VAL1097) (THR1135) [view usage] : b.42.4.0 |beta-Trefoil |STI-like |automated matches |automated matches |Clostridium botulinum [TaxId: 1491]
d1ttua1 : (ASP542) (PHE594) [view usage] : b.1.18.1 |Immunoglobulin-like beta-sandwich |E set domains |NF-kappa-B/REL/DORSAL transcription factors, C-terminal domain |DNA-binding protein LAG-1 (CSL) |Nematode (Caenorhabditis elegans) [TaxId: 6239]
d4r6ub_ : (TYR1) (ASP32) [view usage] : b.42.1.2 |beta-Trefoil |Cytokine |Interleukin-1 (IL-1) |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1j2ga1 : (ARG7) (ILE43) [view usage] : d.96.1.4 |T-fold |Tetrahydrobiopterin biosynthesis enzymes-like |Urate oxidase (uricase) |Urate oxidase (uricase) |Bacillus sp., strain TB-90 [TaxId: 1409]
d1fq4a_ : (ASP178) (SER208) [view usage] : b.50.1.2 |Acid proteases |Acid proteases |Pepsin-like |Acid protease |Baker's yeast (Saccharomyces cerevisiae), proteinase A [TaxId: 4932]
d2c8gb_ : (LEU213) (ALA241) [view usage] : d.166.1.1 |ADP-ribosylation |ADP-ribosylation |ADP-ribosylating toxins |automated matches |Clostridium botulinum [TaxId: 1491]
d1w5ma_ : (GLU30) (ILE65) [view usage] : c.1.10.3 |TIM beta/alpha-barrel |Aldolase |5-aminolaevulinate dehydratase, ALAD (porphobilinogen synthase) |automated matches |Pseudomonas aeruginosa [TaxId: 208964]
d1ux7a_ : (ILE12) (ALA41) [view usage] : b.18.1.28 |Galactose-binding domain-like |Galactose-binding domain-like |Family 36 carbohydrate binding module, CBM36 |Endo-1,4-beta-xylanase D |Paenibacillus polymyxa [TaxId: 1406]
d1lvmb_ : (ALA195) (MET218) [view usage] : b.47.1.3 |Trypsin-like serine proteases |Trypsin-like serine proteases |Viral proteases |TEV protease (nucleat inclusion protein A, NIA) |Tobacco etch virus, TEV [TaxId: 12227]
d1ibqa_ : (SER1) (PHE41) [view usage] : b.50.1.2 |Acid proteases |Acid proteases |Pepsin-like |Acid protease |Fungus (Aspergillus phoenicis), aspergillopepsin [TaxId: 5063]
d1ep5b_ : (VAL119) (PRO150) [view usage] : b.47.1.3 |Trypsin-like serine proteases |Trypsin-like serine proteases |Viral proteases |Viral capsid protein |Venezuelan equine encephalitis virus [TaxId: 11036]
d2hx0a_ : (GLY104) (SER139) [view usage] : d.290.1.3 |AF0104/ALDC/Ptd012-like |AF0104/ALDC/Ptd012-like |AF0104-like |automated matches |Salmonella enterica [TaxId: 28901]
d4no4a_ : (GLY4) (GLY36) [view usage] : b.29.1.3 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Galectin (animal S-lectin) |Galectin-1 |Norway rat (Rattus norvegicus) [TaxId: 10116]
d2gtxa_ : (TRP221) (HIS262) [view usage] : d.127.1.1 |Creatinase/aminopeptidase |Creatinase/aminopeptidase |Creatinase/aminopeptidase |Methionine aminopeptidase |Escherichia coli [TaxId: 562]
d2kzna1 : (TRP64) (VAL90) [view usage] : b.88.1.3 |Mss4-like |Mss4-like |SelR domain |Peptide methionine sulfoxide reductase MsrB |Bacillus subtilis [TaxId: 1423]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.1, b.19, b.29, b.47, b.50, d.144, d.166, b.18, b.121, d.127, d.96, b.1, b.42, b.62, b.55, b.88, g.17, d.290, b.9, d.269,
b.162