Tableau information
Concept source: d2o62a2 amino acid (a.a.) range (GLY69)(ASP111)
nSSEs in this Concept: 4
String of secondary struct.elems. (SSEs) defining this concept: EEEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(GLY69) (GLU74) E1
(SER77) (LEU82) E2
(GLU90) (GLU100) E3
(ASN101) (ASP111) E4
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 172.4° E2
E3 -16.7° 167.6° E3
E4 156.7° -20.1° 172.3°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±8.3° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1ob1f2 : (LYS61) (HIS96) [view usage] : g.3.11.4 |Knottins (small inhibitors, toxins, lectins) |EGF/Laminin |Merozoite surface protein 1 (MSP-1) |Merozoite surface protein 1 (MSP-1) |Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
d1mt6a1 : (TYR62) (ASP99) [view usage] : b.76.2.1 |open-sided beta-meander |Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain |Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain |Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain |Human (Homo sapiens) [TaxId: 9606]
d2j1na_ : (ARG217) (LYS283) [view usage] : f.4.3.1 |Transmembrane beta-barrels |Porins |Porin |automated matches |Escherichia coli [TaxId: 562]
d1utca2 : (HIS197) (LYS245) [view usage] : b.69.6.1 |7-bladed beta-propeller |Clathrin heavy-chain terminal domain |Clathrin heavy-chain terminal domain |Clathrin heavy-chain terminal domain |Norway rat (Rattus norvegicus) [TaxId: 10116]
d4fyqa1 : (TYR176) (ALA214) [view usage] : b.98.1.0 |Zn aminopeptidase N-terminal domain |Zn aminopeptidase N-terminal domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d4l1la_ : (TYR163) (SER217) [view usage] : b.7.1.2 |C2 domain-like |C2 domain (Calcium/lipid-binding domain, CaLB) |Synaptotagmin-like (S variant) |C2 domain from protein kinase c (alpha) |Norway rat (Rattus norvegicus) [TaxId: 10116]
d3nsga_ : (MSE1) (LYS62) [view usage] : f.4.3.1 |Transmembrane beta-barrels |Porins |Porin |automated matches |Salmonella enterica [TaxId: 527001]
d1eala_ : (ILE37) (ILE74) [view usage] : b.60.1.2 |Lipocalins |Lipocalins |Fatty acid binding protein-like |Ileal lipid-binding protein |Pig (Sus scrofa) [TaxId: 9823]
d1w2be_ : (GLY79) (GLY120) [view usage] : i.1.1.2 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Large subunit |Prokaryotic (50S subunit) |Haloarcula marismortui [TaxId: 2238]
d1f5ja_ : (ASN5) (ASN40) [view usage] : b.29.1.11 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Xylanase/endoglucanase 11/12 |Xylanase II |Dictyoglomus thermophilum [TaxId: 14]
d2bmoa2 : (SER292) (GLU331) [view usage] : d.129.3.3 |TBP-like |Bet v1-like |Ring hydroxylating alpha subunit catalytic domain |Nitrobenzene dioxygenase alpha subunit, NBDO-alpha |Comamonas sp. JS765 [TaxId: 58226]
d4afga_ : (LEU136) (ARG189) [view usage] : b.96.1.0 |Nicotinic receptor ligand binding domain-like |Nicotinic receptor ligand binding domain-like |automated matches |automated matches |Capitella teleta [TaxId: 283909]
d1osma_ : (HIS210) (ASP282) [view usage] : f.4.3.1 |Transmembrane beta-barrels |Porins |Porin |Porin |Klebsiella pneumoniae [TaxId: 573]
d1kmoa_ : (PHE223) (ALA290) [view usage] : f.4.3.3 |Transmembrane beta-barrels |Porins |Ligand-gated protein channel |Outer membrane transporter FecA |Escherichia coli [TaxId: 562]
d1eh9a2 : (ASN496) (LYS525) [view usage] : b.71.1.1 |Glycosyl hydrolase domain |Glycosyl hydrolase domain |alpha-Amylases, C-terminal beta-sheet domain |Glycosyltrehalose trehalohydrolase |Sulfolobus solfataricus, km1 [TaxId: 2287]
d4ffva1 : (GLU409) (SER447) [view usage] : b.70.3.1 |8-bladed beta-propeller |DPP6 N-terminal domain-like |DPP6 N-terminal domain-like |automated matches |Norway rat (Rattus norvegicus) [TaxId: 10116]
d3ex7e_ : (PHE5) (TYR51) [view usage] : d.232.1.1 |Mago nashi protein |Mago nashi protein |Mago nashi protein |Mago nashi protein |Human (Homo sapiens) [TaxId: 9606]
d4ldca_ : (LEU271) (LYS327) [view usage] : b.7.1.0 |C2 domain-like |C2 domain (Calcium/lipid-binding domain, CaLB) |automated matches |automated matches |Norway rat (Rattus norvegicus) [TaxId: 10116]
d1oo0a_ : (GLU4) (GLU50) [view usage] : d.232.1.1 |Mago nashi protein |Mago nashi protein |Mago nashi protein |Mago nashi protein |Fruit fly (Drosophila melanogaster) [TaxId: 7227]
d4rnla_ : (ARG2) (PRO48) [view usage] : b.30.5.0 |Supersandwich |Galactose mutarotase-like |automated matches |automated matches |Streptomyces platensis [TaxId: 58346]
d1kmpa_ : (GLY224) (ALA290) [view usage] : f.4.3.3 |Transmembrane beta-barrels |Porins |Ligand-gated protein channel |Outer membrane transporter FecA |Escherichia coli [TaxId: 562]
d2rcdb_ : (THR78) (LEU125) [view usage] : d.17.4.18 |Cystatin-like |NTF2-like |BxeB1374-like |Uncharacterized protein ECA3500 |Pectobacterium atrosepticum [TaxId: 29471]
d1mkfa_ : (LEU281) (GLU335) [view usage] : b.116.1.1 |Viral chemokine binding protein m3 |Viral chemokine binding protein m3 |Viral chemokine binding protein m3 |Viral chemokine binding protein m3 |Murid herpesvirus 4, MuHV-4 [TaxId: 33708]
d4hc1a1 : (PRO11) (THR52) [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1rjlc_ : (THR202) (TRP239) [view usage] : b.76.1.1 |open-sided beta-meander |Outer surface protein |Outer surface protein |Outer surface protein B |Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]
d1p6pa_ : (LEU89) (SER122) [view usage] : b.60.1.2 |Lipocalins |Lipocalins |Fatty acid binding protein-like |Liver basic fatty acid binding protein, LB_FABP |Argentine common toad (Bufo arenarum) [TaxId: 38577]
d2mq3a_ : (LYS500) (LYS543) [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1x3ma2 : (PHE4) (ILE47) [view usage] : c.55.1.2 |Ribonuclease H-like motif |Actin-like ATPase domain |Acetokinase-like |Propionate kinase |Salmonella typhimurium [TaxId: 90371]
d4afha_ : (LEU136) (ARG189) [view usage] : b.96.1.0 |Nicotinic receptor ligand binding domain-like |Nicotinic receptor ligand binding domain-like |automated matches |automated matches |Capitella teleta [TaxId: 283909]
d3gmvx_ : (SER105) (SER155) [view usage] : d.98.1.0 |BLIP-like |beta-lactamase-inhibitor protein, BLIP |automated matches |automated matches |Streptomyces exfoliatus [TaxId: 1905]
d2it9d_ : (MSE1) (ASP34) [view usage] : d.18.1.3 |ssDNA-binding transcriptional regulator domain |ssDNA-binding transcriptional regulator domain |PMN2A0962/syc2379c-like |Hypothetical protein PMN2A_0962 |Prochlorococcus marinus [TaxId: 1219]
d1bpoa2 : (ASP69) (THR103) [view usage] : b.69.6.1 |7-bladed beta-propeller |Clathrin heavy-chain terminal domain |Clathrin heavy-chain terminal domain |Clathrin heavy-chain terminal domain |Norway rat (Rattus norvegicus) [TaxId: 10116]
d2wl1a_ : (GLY651) (SER702) [view usage] : b.29.1.0 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2it9b_ : (ILE2) (ASP34) [view usage] : d.18.1.3 |ssDNA-binding transcriptional regulator domain |ssDNA-binding transcriptional regulator domain |PMN2A0962/syc2379c-like |Hypothetical protein PMN2A_0962 |Prochlorococcus marinus [TaxId: 1219]
d2e6qa_ : (TYR63) (GLU105) [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
b.70, b.69, i.1, b.29, b.30, b.76, d.129, f.4, c.55, b.60, b.1, b.96, d.17, d.98, d.232, b.7, b.71, b.98, d.18, g.3,
b.116