Tableau information
Concept source: d3gysc_ amino acid (a.a.) range (SER81)(THR118)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: HHH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(SER81) (ARG92) H1
(PRO95) (CYS111) H2
(HIS113) (THR118) H3
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
H2 128.6° H2
H3 -96.8° -115.0°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±8.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1fcxa_ : (PRO356) (LEU416) [view usage] : a.123.1.1 |Nuclear receptor ligand-binding domain |Nuclear receptor ligand-binding domain |Nuclear receptor ligand-binding domain |Retinoic acid receptor gamma (RAR-gamma) |Human (Homo sapiens) [TaxId: 9606]
d2ju0a_ : (GLU99) (ASP141) [view usage] : a.39.1.5 |EF Hand-like |EF-hand |Calmodulin-like |Frequenin (neuronal calcium sensor 1) |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1pd5j_ : (ILE41) (MET75) [view usage] : c.43.1.1 |CoA-dependent acyltransferases |CoA-dependent acyltransferases |CAT-like |Chloramphenicol acetyltransferase, CAT |Escherichia coli [TaxId: 562]
d1rfyb_ : (PRO16) (GLY61) [view usage] : a.2.13.1 |Long alpha-hairpin |Transcriptional repressor TraM |Transcriptional repressor TraM |Transcriptional repressor TraM |Agrobacterium tumefaciens [TaxId: 358]
d2qhba_ : (ARG606) (SER658) [view usage] : a.4.1.3 |DNA/RNA-binding 3-helical bundle |Homeodomain-like |Myb/SANT domain |Telomere binding protein TBP1 |Tobacco (Nicotiana tabacum) [TaxId: 4097]
d3fc6b_ : (GLN375) (TRP441) [view usage] : a.123.1.1 |Nuclear receptor ligand-binding domain |Nuclear receptor ligand-binding domain |Nuclear receptor ligand-binding domain |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d2jssa1 : (GLY149) (LEU178) [view usage] : a.22.1.1 |Histone-fold |Histone-fold |Nucleosome core histones |Histone H2A |Baker's yeast (Saccharomyces cerevisiae), H2A.1 [TaxId: 4932]
d1rfya_ : (PRO16) (GLY61) [view usage] : a.2.13.1 |Long alpha-hairpin |Transcriptional repressor TraM |Transcriptional repressor TraM |Transcriptional repressor TraM |Agrobacterium tumefaciens [TaxId: 358]
d3nl0a_ : (PRO436) (ALA474) [view usage] : e.8.1.4 |DNA/RNA polymerases |DNA/RNA polymerases |RNA-dependent RNA-polymerase |Viral RNA polymerase |Foot-and-mouth disease virus - type c [TaxId: 12116]
d1gzsb_ : (ASN170) (THR239) [view usage] : a.168.1.1 |SopE-like GEF domain |SopE-like GEF domain |SopE-like GEF domain |GEF domain of SopE toxin |Salmonella typhimurium [TaxId: 90371]
d2lhla_ : (SER2) (GLN48) [view usage] : a.39.1.2 |EF Hand-like |EF-hand |S100 proteins |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3nkya_ : (PRO436) (GLU474) [view usage] : e.8.1.4 |DNA/RNA polymerases |DNA/RNA polymerases |RNA-dependent RNA-polymerase |Viral RNA polymerase |Foot-and-mouth disease virus - type c [TaxId: 12116]
d3l60a_ : (ASP274) (ARG305) [view usage] : c.43.1.0 |CoA-dependent acyltransferases |CoA-dependent acyltransferases |automated matches |automated matches |Mycobacterium tuberculosis [TaxId: 1773]
d2xd2a_ : (ASN195) (ASP248) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Streptococcus pneumoniae [TaxId: 170187]
d1y98a1 : (TYR1716) (GLN1756) [view usage] : c.15.1.3 |BRCT domain |BRCT domain |BRCT domain |Breast cancer associated protein, BRCA1 |Human (Homo sapiens) [TaxId: 9606]
d1gd5a_ : (ASN68) (LEU127) [view usage] : d.189.1.1 |PX domain |PX domain |PX domain |p47phox NADPH oxidase |Human (Homo sapiens) [TaxId: 9606]
d2coma1 : (GLY15) (GLY41) [view usage] : a.4.1.18 |DNA/RNA-binding 3-helical bundle |Homeodomain-like |SWIRM domain |Lysine-specific histone demethylase 1, LSD1 |Human (Homo sapiens) [TaxId: 9606]
d2qabb_ : (SER464) (LEU544) [view usage] : a.123.1.1 |Nuclear receptor ligand-binding domain |Nuclear receptor ligand-binding domain |Nuclear receptor ligand-binding domain |Estrogen receptor alpha |Human (Homo sapiens) [TaxId: 9606]
d1vlja_ : (TRP265) (GLY314) [view usage] : e.22.1.2 |Dehydroquinate synthase-like |Dehydroquinate synthase-like |Iron-containing alcohol dehydrogenase |NADH-dependent butanol dehydrogenase A (TM0820) |Thermotoga maritima [TaxId: 2336]
d3et1b_ : (HIS396) (TYR464) [view usage] : a.123.1.1 |Nuclear receptor ligand-binding domain |Nuclear receptor ligand-binding domain |Nuclear receptor ligand-binding domain |Peroxisome proliferator activated receptor alpha, PPAR-alpha |Human (Homo sapiens) [TaxId: 9606]
d1pd5b_ : (THR42) (MET75) [view usage] : c.43.1.1 |CoA-dependent acyltransferases |CoA-dependent acyltransferases |CAT-like |Chloramphenicol acetyltransferase, CAT |Escherichia coli [TaxId: 562]
d3p88a_ : (GLU409) (ILE468) [view usage] : a.123.1.1 |Nuclear receptor ligand-binding domain |Nuclear receptor ligand-binding domain |Nuclear receptor ligand-binding domain |Bile acid receptor FXR |Human (Homo sapiens) [TaxId: 9606]
d2cwea1 : (GLU150) (SER188) [view usage] : a.4.5.58 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |Hypothetical protein PH1932 |Hypothetical protein PH1932 |Pyrococcus horikoshii [TaxId: 53953]
d2pyqb_ : (GLU73) (GLY113) [view usage] : a.279.1.1 |Jann4075-like |Jann4075-like |Jann4075-like |Uncharacterized protein Jann4075 |Jannaschia sp. CCS1 [TaxId: 290400]
d1aiva2 : (THR652) (LYS686) [view usage] : c.94.1.2 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Transferrin |Ovotransferrin |Chicken (Gallus gallus) [TaxId: 9031]
d4hw2c_ : (SER247) (ILE287) [view usage] : f.1.4.1 |Toxins' membrane translocation domains |Bcl-2 inhibitors of programmed cell death |Bcl-2 inhibitors of programmed cell death |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1wm9a1 : (LEU35) (GLY85) [view usage] : d.96.1.1 |T-fold |Tetrahydrobiopterin biosynthesis enzymes-like |GTP cyclohydrolase I |GTP cyclohydrolase I |Thermus thermophilus [TaxId: 274]
d4b6gb_ : (PRO178) (GLY207) [view usage] : c.69.1.0 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |automated matches |automated matches |Neisseria meningitidis [TaxId: 122586]
d4jc5a_ : (PRO263) (ASN307) [view usage] : d.387.1.1 |STING C-terminal-like |STING, TM173 CTD-like |Tyrosinase cofactor MelC1 |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d1f76a_ : (TYR3) (LEU37) [view usage] : c.1.4.1 |TIM beta/alpha-barrel |FMN-linked oxidoreductases |FMN-linked oxidoreductases |Dihydroorotate dehydrogenase |Escherichia coli [TaxId: 562]
d4g4si_ : (LEU132) (GLY170) [view usage] : d.153.1.4 |Ntn hydrolase-like |N-terminal nucleophile aminohydrolases (Ntn hydrolases) |Proteasome subunits |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1otsb_ : (TRP253) (SER313) [view usage] : f.20.1.1 |Clc chloride channel |Clc chloride channel |Clc chloride channel |Clc chloride channel |Escherichia coli [TaxId: 562]
d1vyia_ : (ASN226) (GLY254) [view usage] : d.293.1.1 |Phosphoprotein M1, C-terminal domain |Phosphoprotein M1, C-terminal domain |Phosphoprotein M1, C-terminal domain |Phosphoprotein M1, C-terminal domain |Rabies virus, strain CVS-11 [TaxId: 11292]
d1e6vb1 : (HIS380) (LYS414) [view usage] : a.89.1.1 |Methyl-coenzyme M reductase alpha and beta chain C-terminal domain |Methyl-coenzyme M reductase alpha and beta chain C-terminal domain |Methyl-coenzyme M reductase alpha and beta chain C-terminal domain |Beta chain |Methanopyrus kandleri [TaxId: 2320]
d1t15a1 : (SER1715) (GLU1754) [view usage] : c.15.1.3 |BRCT domain |BRCT domain |BRCT domain |Breast cancer associated protein, BRCA1 |Human (Homo sapiens) [TaxId: 9606]
d1scza_ : (ASP285) (THR316) [view usage] : c.43.1.1 |CoA-dependent acyltransferases |CoA-dependent acyltransferases |CAT-like |Dihydrolipoamide succinyltransferase |Escherichia coli [TaxId: 562]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
e.8, c.1, c.69, c.94, e.22, f.20, d.153, d.96, a.123, c.43, a.1, a.4, a.39, f.1, c.15, a.22, a.2, a.89, d.387, d.189,
a.279, a.168, d.293