Tableau information
Concept source: d4a49b_ amino acid (a.a.) range (ASN114)(MET147)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: HHH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(ASN114) (PRO121) H1
(PRO121) (ARG131) H2
(ARG131) (MET147) H3
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
H2 136.3° H2
H3 54.3° -126.3°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±10.9° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1hm4b_ : (PRO115) (ILE177) [view usage] : a.128.1.4 |Terpenoid synthases |Terpenoid synthases |Aristolochene/pentalenene synthase |Pentalenene synthase |Streptomyces sp., UC5319 [TaxId: 1931]
d1wn0a1 : (GLN9) (GLN67) [view usage] : a.24.10.2 |Four-helical up-and-down bundle |Histidine-containing phosphotransfer domain, HPT domain |Phosphorelay protein-like |Histidine-containing phosphotransfer protein HP2 |Maize (Zea mays) [TaxId: 4577]
d2ijcf_ : (CYS48) (THR78) [view usage] : a.152.1.3 |AhpD-like |AhpD-like |Atu0492-like |Hypothetical protein PA0269 |Pseudomonas aeruginosa [TaxId: 287]
d2pvda_ : (LEU11) (THR70) [view usage] : g.36.1.1 |Ferredoxin thioredoxin reductase (FTR), catalytic beta chain |Ferredoxin thioredoxin reductase (FTR), catalytic beta chain |Ferredoxin thioredoxin reductase (FTR), catalytic beta chain |Ferredoxin thioredoxin reductase (FTR), catalytic beta chain |Synechocystis sp. [TaxId: 1143]
d2aw9a1 : (ALA11) (LEU51) [view usage] : a.2.11.1 |Long alpha-hairpin |Fe,Mn superoxide dismutase (SOD), N-terminal domain |Fe,Mn superoxide dismutase (SOD), N-terminal domain |Mn superoxide dismutase (MnSOD) |Deinococcus radiodurans [TaxId: 1299]
d1mdmb_ : (PRO319) (ILE354) [view usage] : a.4.5.21 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |ets domain |ETS-1 transcription factor, residues 331-440 |Mouse (Mus musculus) [TaxId: 10090]
d1d5na1 : (ALA10) (LEU51) [view usage] : a.2.11.1 |Long alpha-hairpin |Fe,Mn superoxide dismutase (SOD), N-terminal domain |Fe,Mn superoxide dismutase (SOD), N-terminal domain |Mn superoxide dismutase (MnSOD) |Escherichia coli [TaxId: 562]
d1y6la_ : (ASN114) (THR147) [view usage] : d.20.1.1 |UBC-like |UBC-like |UBC-related |Ubiquitin conjugating enzyme, UBC |Human (Homo sapiens), ubch8 [TaxId: 9606]
d4bbna_ : (ARG657) (GLU689) [view usage] : d.148.1.0 |Hect, E3 ligase catalytic domain |Hect, E3 ligase catalytic domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1yhla_ : (THR196) (GLY263) [view usage] : a.128.1.0 |Terpenoid synthases |Terpenoid synthases |automated matches |automated matches |Trypanosoma cruzi [TaxId: 5693]
d1vl5a_ : (ILE200) (PHE233) [view usage] : c.66.1.41 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |UbiE/COQ5-like |Hypothetical protein BH2331 |Bacillus halodurans [TaxId: 86665]
d1m2oa1 : (VAL598) (MET624) [view usage] : a.71.2.1 |ERP29 C domain-like |Helical domain of Sec23/24 |Helical domain of Sec23/24 |Sec23 |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d3qj8a_ : (GLN35) (GLY89) [view usage] : c.117.1.1 |Amidase signature (AS) enzymes |Amidase signature (AS) enzymes |Amidase signature (AS) enzymes |automated matches |Norway rat (Rattus norvegicus) [TaxId: 10116]
d4eg2c1 : (ALA0) (SER45) [view usage] : c.97.1.0 |Cytidine deaminase-like |Cytidine deaminase-like |automated matches |automated matches |Vibrio cholerae [TaxId: 666]
d4ffka1 : (ASN27) (ASN98) [view usage] : a.2.11.0 |Long alpha-hairpin |Fe,Mn superoxide dismutase (SOD), N-terminal domain |automated matches |automated matches |Acidilobus saccharovorans [TaxId: 666510]
d4e1ea_ : (THR196) (GLY263) [view usage] : a.128.1.0 |Terpenoid synthases |Terpenoid synthases |automated matches |automated matches |Trypanosoma cruzi [TaxId: 5693]
d1dj7a_ : (ASN7) (THR70) [view usage] : g.36.1.1 |Ferredoxin thioredoxin reductase (FTR), catalytic beta chain |Ferredoxin thioredoxin reductase (FTR), catalytic beta chain |Ferredoxin thioredoxin reductase (FTR), catalytic beta chain |Ferredoxin thioredoxin reductase (FTR), catalytic beta chain |Synechocystis sp. [TaxId: 1143]
d3jw0d_ : (PRO714) (GLU745) [view usage] : d.148.1.0 |Hect, E3 ligase catalytic domain |Hect, E3 ligase catalytic domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d4dzwa_ : (THR196) (GLY263) [view usage] : a.128.1.0 |Terpenoid synthases |Terpenoid synthases |automated matches |automated matches |Trypanosoma cruzi [TaxId: 5693]
d2oa6d_ : (PRO123) (GLY180) [view usage] : a.128.1.4 |Terpenoid synthases |Terpenoid synthases |Aristolochene/pentalenene synthase |automated matches |Aspergillus terreus [TaxId: 33178]
d1ltla_ : (TYR43) (ILE75) [view usage] : b.40.4.11 |OB-fold |Nucleic acid-binding proteins |DNA replication initiator (cdc21/cdc54) N-terminal domain |DNA replication initiator (cdc21/cdc54) N-terminal domain |Methanobacterium thermoautotrophicum [TaxId: 145262]
d2puka_ : (ASN8) (THR70) [view usage] : g.36.1.1 |Ferredoxin thioredoxin reductase (FTR), catalytic beta chain |Ferredoxin thioredoxin reductase (FTR), catalytic beta chain |Ferredoxin thioredoxin reductase (FTR), catalytic beta chain |Ferredoxin thioredoxin reductase (FTR), catalytic beta chain |Synechocystis sp. [TaxId: 1143]
d3ugba_ : (ASN114) (MET147) [view usage] : d.20.1.1 |UBC-like |UBC-like |UBC-related |Ubiquitin conjugating enzyme, UBC |Human (Homo sapiens), E2 D3 [TaxId: 9606]
d1aora1 : (LEU327) (GLY369) [view usage] : a.110.1.1 |Aldehyde ferredoxin oxidoreductase, C-terminal domains |Aldehyde ferredoxin oxidoreductase, C-terminal domains |Aldehyde ferredoxin oxidoreductase, C-terminal domains |Aldehyde ferredoxin oxidoreductase |Pyrococcus furiosus [TaxId: 2261]
d3vdua_ : (SER2) (LEU52) [view usage] : e.49.1.1 |Recombination protein RecR |Recombination protein RecR |Recombination protein RecR |Recombination protein RecR |Thermoanaerobacter tengcongensis [TaxId: 273068]
d3vdpb_ : (THR3) (LYS51) [view usage] : e.49.1.1 |Recombination protein RecR |Recombination protein RecR |Recombination protein RecR |Recombination protein RecR |Thermoanaerobacter tengcongensis [TaxId: 273068]
d1w98b1 : (VAL232) (PHE279) [view usage] : a.74.1.1 |Cyclin-like |Cyclin-like |Cyclin |G1/S-specific cyclin-E1 |Human (Homo sapiens) [TaxId: 9606]
d1c3ra_ : (THR53) (ASN87) [view usage] : c.42.1.2 |Arginase/deacetylase |Arginase/deacetylase |Histone deacetylase, HDAC |HDAC homologue |Aquifex aeolicus [TaxId: 63363]
d2h2ia_ : (ASN37) (SER55) [view usage] : c.31.1.0 |DHS-like NAD/FAD-binding domain |DHS-like NAD/FAD-binding domain |automated matches |automated matches |Thermotoga maritima [TaxId: 2336]
d1w6ja2 : (ASP272) (THR330) [view usage] : a.102.4.2 |alpha/alpha toroid |Terpenoid cyclases/Protein prenyltransferases |Terpene synthases |Lanosterol synthase |Human (Homo sapiens) [TaxId: 9606]
d2d5ua1 : (SER19) (ARG57) [view usage] : d.314.1.1 |PUG domain-like |PUG domain-like |PUG domain |N-glycanase 1, N-terminal domain |Mouse (Mus musculus) [TaxId: 10090]
d2cdyc1 : (ALA10) (LEU50) [view usage] : a.2.11.0 |Long alpha-hairpin |Fe,Mn superoxide dismutase (SOD), N-terminal domain |automated matches |automated matches |Deinococcus radiodurans [TaxId: 243230]
d2bruc_ : (HIS78) (ASP105) [view usage] : c.31.1.4 |DHS-like NAD/FAD-binding domain |DHS-like NAD/FAD-binding domain |Transhydrogenase domain III (dIII) |automated matches |Escherichia coli [TaxId: 562]
d1kxra_ : (THR103) (VAL134) [view usage] : d.3.1.3 |Cysteine proteinases |Cysteine proteinases |Calpain large subunit, catalytic domain (domain II) |Calpain large subunit, catalytic domain (domain II) |Norway rat (Rattus norvegicus), mu-type [TaxId: 10116]
d1pp0b_ : (VAL1075) (SER1116) [view usage] : d.103.1.1 |CytB endotoxin-like |CytB endotoxin-like |CytB endotoxin-like |Volvatoxin A2 |Volvariella volvacea, different isoforms [TaxId: 36659]
d2onga2 : (PRO383) (SER454) [view usage] : a.128.1.0 |Terpenoid synthases |Terpenoid synthases |automated matches |automated matches |Mentha spicata [TaxId: 29719]
d1vddb_ : (PRO5) (ARG52) [view usage] : e.49.1.1 |Recombination protein RecR |Recombination protein RecR |Recombination protein RecR |Recombination protein RecR |Deinococcus radiodurans [TaxId: 1299]
d1orya_ : (ASP1071) (VAL1124) [view usage] : a.24.19.1 |Four-helical up-and-down bundle |Flagellar export chaperone FliS |Flagellar export chaperone FliS |Flagellar export chaperone FliS |Aquifex aeolicus [TaxId: 63363]
d2pu9a_ : (ASN8) (ASN69) [view usage] : g.36.1.1 |Ferredoxin thioredoxin reductase (FTR), catalytic beta chain |Ferredoxin thioredoxin reductase (FTR), catalytic beta chain |Ferredoxin thioredoxin reductase (FTR), catalytic beta chain |Ferredoxin thioredoxin reductase (FTR), catalytic beta chain |Synechocystis sp. [TaxId: 1143]
d2j3zd1 : (GLU15) (SER63) [view usage] : d.166.1.0 |ADP-ribosylation |ADP-ribosylation |automated matches |automated matches |Clostridium botulinum [TaxId: 1491]
d3f92a1 : (GLU121) (GLY154) [view usage] : d.20.1.1 |UBC-like |UBC-like |UBC-related |Ubiquitin-conjugating enzyme E2-25 kDa, E2 domain |Human (Homo sapiens) [TaxId: 9606]
d2butb1 : (SER352) (ALA368) [view usage] : b.3.6.1 |Prealbumin-like |Aromatic compound dioxygenase |Aromatic compound dioxygenase |Protocatechuate-3,4-dioxygenase, beta chain |Acinetobacter calcoaceticus, adp1 [TaxId: 471]
d1atja_ : (ASN13) (SER73) [view usage] : a.93.1.1 |Heme-dependent peroxidases |Heme-dependent peroxidases |CCP-like |Plant peroxidase |Horseradish (Armoracia rusticana) [TaxId: 3704]
d1vddc_ : (PRO5) (ASP53) [view usage] : e.49.1.1 |Recombination protein RecR |Recombination protein RecR |Recombination protein RecR |Recombination protein RecR |Deinococcus radiodurans [TaxId: 1299]
d1suoa_ : (PHE264) (GLY333) [view usage] : a.104.1.1 |Cytochrome P450 |Cytochrome P450 |Cytochrome P450 |Mammalian cytochrome p450 2b4 |Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
d3j38j_ : (LYS23) (GLY86) [view usage] : i.1.1.1 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Ribosome complexes |Eukaryotic, cytoplasmic (80S ribosome functional complex) |Drosophila melanogaster [TaxId: 7227]
d2xbfa_ : (PRO659) (GLU690) [view usage] : d.148.1.0 |Hect, E3 ligase catalytic domain |Hect, E3 ligase catalytic domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1yhka_ : (ALA198) (GLY263) [view usage] : a.128.1.0 |Terpenoid synthases |Terpenoid synthases |automated matches |automated matches |Trypanosoma cruzi [TaxId: 5693]
d1xuqa1 : (ALA12) (LYS53) [view usage] : a.2.11.0 |Long alpha-hairpin |Fe,Mn superoxide dismutase (SOD), N-terminal domain |automated matches |automated matches |Anthrax bacillus (Bacillus anthracis) [TaxId: 1392]
d3dcta_ : (ASP359) (ILE421) [view usage] : a.123.1.1 |Nuclear receptor ligand-binding domain |Nuclear receptor ligand-binding domain |Nuclear receptor ligand-binding domain |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1tloa_ : (THR103) (VAL134) [view usage] : d.3.1.3 |Cysteine proteinases |Cysteine proteinases |Calpain large subunit, catalytic domain (domain II) |Calpain large subunit, catalytic domain (domain II) |Norway rat (Rattus norvegicus), mu-type [TaxId: 10116]
d4oqpa_ : (ARG213) (THR260) [view usage] : c.124.1.0 |NagB/RpiA/CoA transferase-like |NagB/RpiA/CoA transferase-like |automated matches |automated matches |Bacillus subtilis [TaxId: 224308]
d4o6oa_ : (SER2) (LEU52) [view usage] : e.49.1.1 |Recombination protein RecR |Recombination protein RecR |Recombination protein RecR |Recombination protein RecR |Thermoanaerobacter tengcongensis [TaxId: 273068]
d3vdpd_ : (SER2) (LYS51) [view usage] : e.49.1.1 |Recombination protein RecR |Recombination protein RecR |Recombination protein RecR |Recombination protein RecR |Thermoanaerobacter tengcongensis [TaxId: 273068]
d1qsja_ : (HIS1126) (ARG1155) [view usage] : a.102.4.4 |alpha/alpha toroid |Terpenoid cyclases/Protein prenyltransferases |Complement components |Thio-ester containing domain (TED) from Complement C3, aka C3d or C3dg |Norway rat (Rattus norvegicus) [TaxId: 10116]
d2i53a2 : (TYR161) (TRP201) [view usage] : a.74.1.1 |Cyclin-like |Cyclin-like |Cyclin |Cyclin K |Human (Homo sapiens) [TaxId: 9606]
d2ijcb_ : (CYS48) (THR78) [view usage] : a.152.1.3 |AhpD-like |AhpD-like |Atu0492-like |Hypothetical protein PA0269 |Pseudomonas aeruginosa [TaxId: 287]
d2glua1 : (TYR171) (CYS204) [view usage] : c.66.1.41 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |UbiE/COQ5-like |Hypothetical protein YcgJ |Bacillus subtilis [TaxId: 1423]
d4o6od_ : (SER2) (LEU52) [view usage] : e.49.1.1 |Recombination protein RecR |Recombination protein RecR |Recombination protein RecR |Recombination protein RecR |Thermoanaerobacter tengcongensis [TaxId: 273068]
d1bu2a2 : (LEU151) (LEU193) [view usage] : a.74.1.1 |Cyclin-like |Cyclin-like |Cyclin |Viral cyclin |Herpesvirus saimiri [TaxId: 10381]
d2pvga_ : (ALA8) (THR70) [view usage] : g.36.1.1 |Ferredoxin thioredoxin reductase (FTR), catalytic beta chain |Ferredoxin thioredoxin reductase (FTR), catalytic beta chain |Ferredoxin thioredoxin reductase (FTR), catalytic beta chain |Ferredoxin thioredoxin reductase (FTR), catalytic beta chain |Synechocystis sp. [TaxId: 1143]
d3fs1a_ : (VAL264) (ASP316) [view usage] : a.123.1.1 |Nuclear receptor ligand-binding domain |Nuclear receptor ligand-binding domain |Nuclear receptor ligand-binding domain |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3kkya1 : (ALA10) (LEU50) [view usage] : a.2.11.1 |Long alpha-hairpin |Fe,Mn superoxide dismutase (SOD), N-terminal domain |Fe,Mn superoxide dismutase (SOD), N-terminal domain |automated matches |Deinococcus radiodurans [TaxId: 1299]
d3i2ga1 : (PRO212) (SER239) [view usage] : c.69.1.21 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |PepX catalytic domain-like |automated matches |Rhodococcus sp. [TaxId: 104109]
d1miob_ : (GLY410) (GLU448) [view usage] : c.92.2.3 |Chelatase-like |"Helical backbone" metal receptor |Nitrogenase iron-molybdenum protein |Nitrogenase iron-molybdenum protein, beta chain |Clostridium pasteurianum [TaxId: 1501]
d3l1za_ : (ASN114) (MET147) [view usage] : d.20.1.1 |UBC-like |UBC-like |UBC-related |automated matches |Human (Homo sapiens) [TaxId: 9606]
d4o6pb_ : (SER2) (LEU52) [view usage] : e.49.1.1 |Recombination protein RecR |Recombination protein RecR |Recombination protein RecR |Recombination protein RecR |Thermoanaerobacter tengcongensis [TaxId: 273068]
d2bepa1 : (GLU121) (GLY154) [view usage] : d.20.1.1 |UBC-like |UBC-like |UBC-related |Ubiquitin-conjugating enzyme E2-25 kDa, E2 domain |Cow (Bos taurus) [TaxId: 9913]
d2ikba1 : (ALA111) (ALA163) [view usage] : d.2.1.9 |Lysozyme-like |Lysozyme-like |NMB1012-like |Hypothetical protein NMB1012 |Neisseria meningitidis [TaxId: 487]
d1ezwa_ : (VAL259) (VAL290) [view usage] : c.1.16.3 |TIM beta/alpha-barrel |Bacterial luciferase-like |F420 dependent oxidoreductases |Coenzyme F420 dependent tetrahydromethanopterin reductase |Methanopyrus kandleri [TaxId: 2320]
d3e9la1 : (TYR1920) (PRO1956) [view usage] : c.55.3.14 |Ribonuclease H-like motif |Ribonuclease H-like |Prp8 beta-finger domain-like |Pre-mRNA-splicing factor 8, Prp8 |Human (Homo sapiens) [TaxId: 9606]
d4oqqa_ : (ARG213) (THR260) [view usage] : c.124.1.0 |NagB/RpiA/CoA transferase-like |NagB/RpiA/CoA transferase-like |automated matches |automated matches |Bacillus subtilis [TaxId: 224308]
d4pofa_ : (TRP46) (GLN84) [view usage] : b.40.4.0 |OB-fold |Nucleic acid-binding proteins |automated matches |automated matches |Pyrococcus furiosus [TaxId: 186497]
d1xxla_ : (TYR171) (CYS204) [view usage] : c.66.1.41 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |UbiE/COQ5-like |Hypothetical protein YcgJ |Bacillus subtilis [TaxId: 1423]
d2hnkc_ : (THR9) (MET42) [view usage] : c.66.1.0 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |automated matches |automated matches |Leptospira interrogans [TaxId: 173]
d1tl9a_ : (THR103) (VAL134) [view usage] : d.3.1.3 |Cysteine proteinases |Cysteine proteinases |Calpain large subunit, catalytic domain (domain II) |Calpain large subunit, catalytic domain (domain II) |Norway rat (Rattus norvegicus), mu-type [TaxId: 10116]
d1wb8a1 : (LYS17) (ASN90) [view usage] : a.2.11.1 |Long alpha-hairpin |Fe,Mn superoxide dismutase (SOD), N-terminal domain |Fe,Mn superoxide dismutase (SOD), N-terminal domain |Fe superoxide dismutase (FeSOD) |Sulfolobus solfataricus [TaxId: 2287]
d1f07a_ : (PRO234) (VAL265) [view usage] : c.1.16.3 |TIM beta/alpha-barrel |Bacterial luciferase-like |F420 dependent oxidoreductases |Coenzyme F420 dependent tetrahydromethanopterin reductase |Methanobacterium thermoautotrophicum [TaxId: 145262]
d2k2qa_ : (LYS47) (TYR80) [view usage] : a.28.1.2 |Acyl carrier protein-like |ACP-like |Peptidyl carrier domain |Peptidyl carrier protein (PCP), thioester domain |Bacillus brevis [TaxId: 1393]
d1su0b_ : (ASN103) (ARG141) [view usage] : d.224.1.2 |SufE/NifU |SufE/NifU |NifU/IscU domain |IscU homolog SPy0289 |Streptococcus pyogenes [TaxId: 1314]
d3rt3c_ : (ASP41) (PRO102) [view usage] : a.16.1.1 |S15/NS1 RNA-binding domain |S15/NS1 RNA-binding domain |N-terminal, RNA-binding domain of nonstructural protein NS1 |automated matches |Influenza b virus [TaxId: 107412]
d4dwba_ : (THR196) (GLY263) [view usage] : a.128.1.0 |Terpenoid synthases |Terpenoid synthases |automated matches |automated matches |Trypanosoma cruzi [TaxId: 5693]
d1f5qb2 : (LEU148) (LYS190) [view usage] : a.74.1.1 |Cyclin-like |Cyclin-like |Cyclin |Viral cyclin |Murine herpesvirus 68 [TaxId: 33708]
d1al04_ : (ILE91) (GLY150) [view usage] : a.84.1.1 |Scaffolding protein gpD of bacteriophage procapsid |Scaffolding protein gpD of bacteriophage procapsid |Scaffolding protein gpD of bacteriophage procapsid |Scaffolding protein gpD of bacteriophage procapsid |Bacteriophage phi-X174 [TaxId: 10847]
d1scha_ : (ASN13) (SER73) [view usage] : a.93.1.1 |Heme-dependent peroxidases |Heme-dependent peroxidases |CCP-like |Plant peroxidase |Peanut (Arachis hypogaea) [TaxId: 3818]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.1, c.69, a.104, i.1, a.128, c.92, c.117, a.102, c.66, c.124, a.93, c.42, b.40, c.55, d.166, d.2, d.3, c.31, a.123, c.97,
d.20, a.152, a.4, b.3, a.74, d.148, a.24, e.49, d.224, a.28, a.71, a.2, a.110, a.16, a.84, d.103, d.314, g.36