Tableau information
Concept source: d4cimb_ amino acid (a.a.) range (MET115)(LEU150)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: HHH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(MET115) (ALA135) H1
(ALA135) (GLY142) H2
(TRP144) (LEU150) H3
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
H2 -54.2° H2
H3 101.8° 64.1°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±10.2° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1umxm_ : (THR261) (ASN300) [view usage] : f.26.1.1 |Bacterial photosystem II reaction centre, L and M subunits |Bacterial photosystem II reaction centre, L and M subunits |Bacterial photosystem II reaction centre, L and M subunits |M (medium) subunit |Rhodobacter sphaeroides [TaxId: 1063]
d1p2xa_ : (PHE65) (GLY115) [view usage] : a.40.1.1 |CH domain-like |Calponin-homology domain, CH-domain |Calponin-homology domain, CH-domain |Ras GTPase-activating-like protein rng2 |Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
d2lhha_ : (GLU64) (ILE112) [view usage] : a.39.1.5 |EF Hand-like |EF-hand |Calmodulin-like |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 559292]
d3visb_ : (ALA212) (HIS223) [view usage] : c.69.1.16 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Lipase |automated matches |Thermobifida alba [TaxId: 53522]
d1k1xa3 : (ASP214) (SER243) [view usage] : c.6.2.2 |7-stranded beta/alpha barrel |Glycoside hydrolase/deacetylase |4-alpha-glucanotransferase, N-terminal domain |4-alpha-glucanotransferase, N-terminal domain |Thermococcus litoralis [TaxId: 2265]
d2uzta_ : (VAL288) (ARG308) [view usage] : d.144.1.7 |Protein kinase-like (PK-like) |Protein kinase-like (PK-like) |Protein kinases, catalytic subunit |automated matches |Cow (Bos taurus) [TaxId: 9913]
d1qyia_ : (GLU16) (GLY73) [view usage] : c.108.1.13 |HAD-like |HAD-like |Hypothetical protein MW1667 (SA1546) |Hypothetical protein MW1667 (SA1546) |Staphylococcus aureus [TaxId: 1280]
d1dvva_ : (ASP2) (ALA35) [view usage] : a.3.1.1 |Cytochrome c |Cytochrome c |monodomain cytochrome c |Cytochrome c551 |Pseudomonas aeruginosa [TaxId: 287]
d1tfoa_ : (ARG602) (ASP640) [view usage] : d.243.1.1 |Colicin D/E5 nuclease domain |Colicin D/E5 nuclease domain |Colicin D nuclease domain |Colicin D nuclease domain |Escherichia coli [TaxId: 562]
d4c52b_ : (LEU162) (LEU194) [view usage] : f.1.4.1 |Toxins' membrane translocation domains |Bcl-2 inhibitors of programmed cell death |Bcl-2 inhibitors of programmed cell death |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2i3ea_ : (LEU36) (PHE60) [view usage] : d.61.1.0 |LigT-like |LigT-like |automated matches |automated matches |Carassius auratus [TaxId: 7957]
d1m8ka_ : (SER131) (LYS171) [view usage] : c.26.1.3 |Adenine nucleotide alpha hydrolase-like |Nucleotidylyl transferase |Adenylyltransferase |Nicotinamide mononucleotide (NMN) adenylyltransferase |Methanobacterium thermoautotrophicum [TaxId: 145262]
d2e74a_ : (ASN3) (VAL21) [view usage] : f.21.1.2 |Heme-binding four-helical bundle |Transmembrane di-heme cytochromes |Cytochrome b of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) |automated matches |Mastigocladus laminosus [TaxId: 83541]
d1od2b2 : (GLU2026) (ARG2046) [view usage] : c.14.1.4 |ClpP/crotonase |ClpP/crotonase |Biotin dependent carboxylase carboxyltransferase domain |Acetyl-coenzyme A carboxylase |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d2voia_ : (ALA114) (PHE148) [view usage] : f.1.4.0 |Toxins' membrane translocation domains |Bcl-2 inhibitors of programmed cell death |automated matches |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d1qh3a_ : (ARG226) (ASP253) [view usage] : d.157.1.2 |Metallo-hydrolase/oxidoreductase |Metallo-hydrolase/oxidoreductase |Glyoxalase II (hydroxyacylglutathione hydrolase) |Glyoxalase II (hydroxyacylglutathione hydrolase) |Human (Homo sapiens) [TaxId: 9606]
d1s63a_ : (SER60) (ASP110) [view usage] : a.118.6.1 |alpha-alpha superhelix |Protein prenylyltransferase |Protein prenylyltransferase |Protein farnesyltransferase alpha-subunit |Human (Homo sapiens) [TaxId: 9606]
d1v74a_ : (ARG602) (SER639) [view usage] : d.243.1.1 |Colicin D/E5 nuclease domain |Colicin D/E5 nuclease domain |Colicin D nuclease domain |Colicin D nuclease domain |Escherichia coli [TaxId: 562]
d1m8ga_ : (SER131) (ALA170) [view usage] : c.26.1.3 |Adenine nucleotide alpha hydrolase-like |Nucleotidylyl transferase |Adenylyltransferase |Nicotinamide mononucleotide (NMN) adenylyltransferase |Methanobacterium thermoautotrophicum [TaxId: 145262]
d1od2a2 : (GLU2026) (LEU2047) [view usage] : c.14.1.4 |ClpP/crotonase |ClpP/crotonase |Biotin dependent carboxylase carboxyltransferase domain |Acetyl-coenzyme A carboxylase |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d2a6pa_ : (THR95) (GLY112) [view usage] : c.60.1.0 |Phosphoglycerate mutase-like |Phosphoglycerate mutase-like |automated matches |automated matches |Mycobacterium tuberculosis [TaxId: 83332]
d1lmb3_ : (THR8) (MET40) [view usage] : a.35.1.2 |lambda repressor-like DNA-binding domains |lambda repressor-like DNA-binding domains |Phage repressors |lambda C1 repressor, DNA-binding domain |Bacteriophage lambda [TaxId: 10710]
d2uydx_ : (THR144) (THR173) [view usage] : d.35.1.1 |Heme-binding protein A (HasA) |Heme-binding protein A (HasA) |Heme-binding protein A (HasA) |automated matches |Serratia marcescens [TaxId: 615]
d1jpzb_ : (SER72) (SER108) [view usage] : a.104.1.1 |Cytochrome P450 |Cytochrome P450 |Cytochrome P450 |Cytochrome P450 bm-3 |Bacillus megaterium [TaxId: 1404]
d1ak6a_ : (GLY139) (VAL165) [view usage] : d.109.1.2 |Gelsolin-like |Actin depolymerizing proteins |Cofilin-like |Destrin |Human and pig (Homo sapiens) and (Sus scrofa) [TaxId: 9606]
d1oaoa_ : (SER432) (GLY459) [view usage] : e.26.1.2 |Prismane protein-like |Prismane protein-like |Carbon monoxide dehydrogenase |Bifunctional carbon monoxide dehydrogenase/acetyl-CoA synthase (CODH/ACS) beta (CODH) subunit |Moorella thermoacetica [TaxId: 1525]
d1vjta2 : (ASN243) (GLY272) [view usage] : d.162.1.2 |LDH C-terminal domain-like |LDH C-terminal domain-like |AglA-like glucosidase |Putative alpha-glucosidase TM0752 |Thermotoga maritima [TaxId: 2336]
d1m8ja_ : (SER131) (ALA170) [view usage] : c.26.1.3 |Adenine nucleotide alpha hydrolase-like |Nucleotidylyl transferase |Adenylyltransferase |Nicotinamide mononucleotide (NMN) adenylyltransferase |Methanobacterium thermoautotrophicum [TaxId: 145262]
d1ndva_ : (SER103) (GLY145) [view usage] : c.1.9.1 |TIM beta/alpha-barrel |Metallo-dependent hydrolases |Adenosine/AMP deaminase |Adenosine deaminase (ADA) |Cow (Bos taurus) [TaxId: 9913]
d2f0ya_ : (SER60) (ASP110) [view usage] : a.118.6.1 |alpha-alpha superhelix |Protein prenylyltransferase |Protein prenylyltransferase |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3kx3b_ : (SER72) (SER108) [view usage] : a.104.1.1 |Cytochrome P450 |Cytochrome P450 |Cytochrome P450 |Cytochrome P450 bm-3 |Bacillus megaterium [TaxId: 1404]
d1fbub_ : (ASN227) (GLY256) [view usage] : a.4.5.22 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |Heat-shock transcription factor |Heat-shock transcription factor |Milk yeast (Kluyveromyces lactis) [TaxId: 28985]
d1fbqa_ : (ASN227) (GLY256) [view usage] : a.4.5.22 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |Heat-shock transcription factor |Heat-shock transcription factor |Milk yeast (Kluyveromyces lactis) [TaxId: 28985]
d2o28b_ : (ALA47) (GLY82) [view usage] : d.108.1.0 |Acyl-CoA N-acyltransferases (Nat) |Acyl-CoA N-acyltransferases (Nat) |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1cc5a_ : (SER10) (GLY26) [view usage] : a.3.1.1 |Cytochrome c |Cytochrome c |monodomain cytochrome c |Cytochrome c5 |Azotobacter vinelandii [TaxId: 354]
d1tfka_ : (GLN604) (LEU638) [view usage] : d.243.1.1 |Colicin D/E5 nuclease domain |Colicin D/E5 nuclease domain |Colicin D nuclease domain |Colicin D nuclease domain |Escherichia coli [TaxId: 562]
d1ue8a_ : (GLY45) (ASN88) [view usage] : a.104.1.1 |Cytochrome P450 |Cytochrome P450 |Cytochrome P450 |Cyp119 |Sulfolobus tokodaii [TaxId: 111955]
d2pp4a1 : (VAL181) (ASP220) [view usage] : a.277.1.1 |TAFH domain-like |TAFH domain-like |TAFH domain-like |ETO |Human (Homo sapiens) [TaxId: 9606]
d2huza_ : (ALA47) (GLY82) [view usage] : d.108.1.0 |Acyl-CoA N-acyltransferases (Nat) |Acyl-CoA N-acyltransferases (Nat) |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1llia_ : (THR8) (LEU40) [view usage] : a.35.1.2 |lambda repressor-like DNA-binding domains |lambda repressor-like DNA-binding domains |Phage repressors |lambda C1 repressor, DNA-binding domain |Bacteriophage lambda [TaxId: 10710]
d1gm0a_ : (ARG46) (ALA73) [view usage] : a.39.2.1 |EF Hand-like |Insect pheromone/odorant-binding proteins |Insect pheromone/odorant-binding proteins |Moth pheromone-binding protein, PBP |Silkworm (Bombyx mori) [TaxId: 7091]
d1djna1 : (TRP264) (SER290) [view usage] : c.1.4.1 |TIM beta/alpha-barrel |FMN-linked oxidoreductases |FMN-linked oxidoreductases |Trimethylamine dehydrogenase, N-terminal domain |Methylophilus methylotrophus, w3a1 [TaxId: 17]
d2fnca_ : (MET294) (ASN317) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Thermotoga maritima [TaxId: 243274]
d1lrva_ : (CYS17) (ASN51) [view usage] : a.118.1.5 |alpha-alpha superhelix |ARM repeat |Leucine-rich repeat variant |Leucine-rich repeat variant |Azotobacter vinelandii [TaxId: 354]
d1f9aa_ : (SER125) (ALA164) [view usage] : c.26.1.3 |Adenine nucleotide alpha hydrolase-like |Nucleotidylyl transferase |Adenylyltransferase |Nicotinamide mononucleotide (NMN) adenylyltransferase |Methanococcus jannaschii [TaxId: 2190]
d1wtua_ : (ASN2) (ASP40) [view usage] : a.55.1.1 |IHF-like DNA-binding proteins |IHF-like DNA-binding proteins |Prokaryotic DNA-bending protein |Transcription factor 1, TF1 |Bacteriophage SPO1 [TaxId: 10685]
d2jeka1 : (LEU45) (HIS71) [view usage] : a.255.1.1 |Rv1873-like |Rv1873-like |Rv1873-like |Hypothetical protein Rv1873 (MT1922) |Mycobacterium tuberculosis [TaxId: 1773]
d1a0ca_ : (PHE23) (LEU41) [view usage] : c.1.15.3 |TIM beta/alpha-barrel |Xylose isomerase-like |Xylose isomerase |D-xylose isomerase |Clostridium thermosulfurogenes, also known as Thermoanaerobacter thermosulfurigenes [TaxId: 33950]
d1f6nm_ : (THR261) (ASN300) [view usage] : f.26.1.1 |Bacterial photosystem II reaction centre, L and M subunits |Bacterial photosystem II reaction centre, L and M subunits |Bacterial photosystem II reaction centre, L and M subunits |M (medium) subunit |Rhodobacter sphaeroides [TaxId: 1063]
d1zi7a1 : (ASN60) (THR92) [view usage] : d.338.1.1 |Oxysterol-binding protein-like |Oxysterol-binding protein-like |Oxysterol-binding protein |Oxysterol-binding protein homolog 4, KES1 |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1oj7a_ : (LYS296) (GLY338) [view usage] : e.22.1.2 |Dehydroquinate synthase-like |Dehydroquinate synthase-like |Iron-containing alcohol dehydrogenase |Hypothetical oxidoreductase yqhD |Escherichia coli [TaxId: 562]
d3bzna_ : (ASP332) (ARG359) [view usage] : d.161.1.1 |ADC synthase |ADC synthase |ADC synthase |automated matches |Escherichia coli [TaxId: 562]
d3dtsm_ : (THR261) (ASN300) [view usage] : f.26.1.1 |Bacterial photosystem II reaction centre, L and M subunits |Bacterial photosystem II reaction centre, L and M subunits |Bacterial photosystem II reaction centre, L and M subunits |M (medium) subunit |Rhodobacter sphaeroides [TaxId: 1063]
d4hw2c_ : (ILE287) (HIS320) [view usage] : f.1.4.1 |Toxins' membrane translocation domains |Bcl-2 inhibitors of programmed cell death |Bcl-2 inhibitors of programmed cell death |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1qtra_ : (ARG142) (SER187) [view usage] : c.69.1.7 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Proline iminopeptidase-like |Proline aminopeptidase |Serratia marcescens [TaxId: 615]
d1mjga_ : (SER432) (GLY459) [view usage] : e.26.1.2 |Prismane protein-like |Prismane protein-like |Carbon monoxide dehydrogenase |Bifunctional carbon monoxide dehydrogenase/acetyl-CoA synthase (CODH/ACS) beta (CODH) subunit |Moorella thermoacetica [TaxId: 1525]
d2ponb_ : (LEU190) (LEU210) [view usage] : f.1.4.1 |Toxins' membrane translocation domains |Bcl-2 inhibitors of programmed cell death |Bcl-2 inhibitors of programmed cell death |Apoptosis regulator Bcl-xL |Human (Homo sapiens) [TaxId: 9606]
d1faha_ : (SER72) (SER108) [view usage] : a.104.1.1 |Cytochrome P450 |Cytochrome P450 |Cytochrome P450 |Cytochrome P450 bm-3 |Bacillus megaterium [TaxId: 1404]
d1hsja1 : (ASP378) (SER416) [view usage] : a.4.5.28 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |MarR-like transcriptional regulators |Staphylococcal accessory regulator A homolog, SarR |Staphylococcus aureus [TaxId: 1280]
d1hksa_ : (ASN79) (GLY108) [view usage] : a.4.5.22 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |Heat-shock transcription factor |Heat-shock transcription factor |Fruit fly (Drosophila melanogaster) [TaxId: 7227]
d1h31a1 : (MET55) (TYR88) [view usage] : a.3.1.8 |Cytochrome c |Cytochrome c |Di-heme cytochrome c SoxA |Di-heme cytochrome c SoxA |Rhodovulum sulfidophilum [TaxId: 35806]
d1yuna_ : (LEU114) (CYS127) [view usage] : c.26.1.0 |Adenine nucleotide alpha hydrolase-like |Nucleotidylyl transferase |automated matches |automated matches |Pseudomonas aeruginosa [TaxId: 287]
d1gpba_ : (VAL21) (GLU76) [view usage] : c.87.1.4 |UDP-Glycosyltransferase/glycogen phosphorylase |UDP-Glycosyltransferase/glycogen phosphorylase |Oligosaccharide phosphorylase |Glycogen phosphorylase |Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.1, c.69, c.94, a.104, c.6, a.118, c.108, c.26, d.157, c.14, e.22, d.144, c.87, f.26, c.60, d.108, f.21, a.4, a.39, d.162,
d.109, e.26, a.3, f.1, a.55, a.40, d.338, a.35, a.255, d.161, d.35, a.277, d.61, d.243