Tableau information
Concept source: d1o5ha_ amino acid (a.a.) range (GLU56)(ILE163)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: HHH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(GLU56) (TYR91) H1
(SER94) (GLU128) H2
(ALA135) (ILE163) H3
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
H2 -160.2° H2
H3 28.1° -162.3°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±11.1° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d2gukb_ : (LYS69) (SER115) [view usage] : d.360.1.1 |PG1857-like |PG1857-like |PG1857-like |Hypothetical protein PG1857 |Porphyromonas gingivalis [TaxId: 837]
d2oaua3 : (TYR27) (GLN112) [view usage] : f.34.1.1 |Mechanosensitive channel protein MscS (YggB), transmembrane region |Mechanosensitive channel protein MscS (YggB), transmembrane region |Mechanosensitive channel protein MscS (YggB), transmembrane region |Mechanosensitive channel protein MscS (YggB), transmembrane region |Escherichia coli [TaxId: 562]
d3d4ja2 : (VAL233) (GLY296) [view usage] : d.58.26.0 |Ferredoxin-like |GHMP Kinase, C-terminal domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2guka1 : (LYS69) (ARG113) [view usage] : d.360.1.1 |PG1857-like |PG1857-like |PG1857-like |Hypothetical protein PG1857 |Porphyromonas gingivalis [TaxId: 837]
d1d1da1 : (GLY151) (PRO187) [view usage] : a.28.3.1 |Acyl carrier protein-like |Retrovirus capsid dimerization domain-like |Retrovirus capsid protein C-terminal domain |RSV capsid protein |Rous sarcoma virus [TaxId: 11886]
d1udya2 : (GLY76) (GLU126) [view usage] : e.6.1.1 |Acyl-CoA dehydrogenase NM domain-like |Acyl-CoA dehydrogenase NM domain-like |Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains |Medium chain acyl-CoA dehydrogenase, NM domains |Pig (Sus scrofa) [TaxId: 9823]
d2qapa_ : (SER318) (ASP358) [view usage] : c.1.10.0 |TIM beta/alpha-barrel |Aldolase |automated matches |automated matches |Trypanosome (Leishmania mexicana) [TaxId: 5665]
d4dhib_ : (THR121) (ASP162) [view usage] : d.3.1.0 |Cysteine proteinases |Cysteine proteinases |automated matches |automated matches |Nematode (Caenorhabditis elegans) [TaxId: 6239]
d1gaxa5 : (TYR649) (LEU694) [view usage] : a.27.1.1 |Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases |Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases |Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases |Valyl-tRNA synthetase (ValRS) |Thermus thermophilus [TaxId: 274]
d1pfua1 : (PRO460) (LEU506) [view usage] : a.27.1.1 |Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases |Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases |Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases |Methionyl-tRNA synthetase (MetRS) |Escherichia coli [TaxId: 562]
d3cr3a1 : (THR93) (THR137) [view usage] : a.208.1.1 |DhaL-like |DhaL-like |DhaL-like |PTS-dependent dihydroxyacetone kinase, ADP-binding subunit DhaL |Lactococcus lactis [TaxId: 1358]
d2jexa_ : (THR3) (MET75) [view usage] : b.91.1.0 |E2 regulatory, transactivation domain |E2 regulatory, transactivation domain |automated matches |automated matches |Bovine papillomavirus type 1 [TaxId: 10559]
d3capa_ : (ASN199) (VAL300) [view usage] : f.13.1.2 |Family A G protein-coupled receptor-like |Family A G protein-coupled receptor-like |Rhodopsin-like |automated matches |Cow (Bos taurus) [TaxId: 9913]
d2pbea1 : (SER220) (CYS281) [view usage] : a.160.1.5 |PAP/OAS1 substrate-binding domain |PAP/OAS1 substrate-binding domain |AadK C-terminal domain-like |Aminoglycoside 6-adenylyltransferase AadK |Bacillus subtilis [TaxId: 1423]
d1gk2a_ : (CYS284) (SER399) [view usage] : a.127.1.2 |L-aspartase-like |L-aspartase-like |HAL/PAL-like |Histidine ammonia-lyase (HAL) |Pseudomonas putida [TaxId: 303]
d3brjd_ : (LEU67) (LEU119) [view usage] : a.285.1.1 |MtlR-like |MtlR-like |MtlR-like |Mannitol operon repressor MtlR |Vibrio parahaemolyticus [TaxId: 670]
d1gqea_ : (GLN43) (GLU114) [view usage] : e.38.1.1 |Release factor |Release factor |Release factor |Polypeptide chain release factor 2 (RF2) |Escherichia coli [TaxId: 562]
d1d5ta1 : (THR122) (GLU159) [view usage] : c.3.1.3 |FAD/NAD(P)-binding domain |FAD/NAD(P)-binding domain |GDI-like N domain |Guanine nucleotide dissociation inhibitor, GDI |Cow (Bos taurus) [TaxId: 9913]
d1f4la1 : (PRO460) (ASN507) [view usage] : a.27.1.1 |Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases |Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases |Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases |Methionyl-tRNA synthetase (MetRS) |Escherichia coli [TaxId: 562]
d3wc9b_ : (GLN320) (GLN369) [view usage] : a.128.1.2 |Terpenoid synthases |Terpenoid synthases |Squalene synthase |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1zs3a1 : (ASP103) (GLY167) [view usage] : a.25.1.1 |Ferritin-like |Ferritin-like |Ferritin |Dodecameric ferritin homolog |Lactococcus lactis, DpsB [TaxId: 1358]
d1orya_ : (TYR1008) (PHE1069) [view usage] : a.24.19.1 |Four-helical up-and-down bundle |Flagellar export chaperone FliS |Flagellar export chaperone FliS |Flagellar export chaperone FliS |Aquifex aeolicus [TaxId: 63363]
d3h90a1 : (VAL120) (LEU206) [view usage] : f.59.1.1 |Cation efflux protein transmembrane domain-like |Cation efflux protein transmembrane domain-like |Cation efflux protein transmembrane domain-like |automated matches |Escherichia coli K-12 [TaxId: 83333]
d1gu9l_ : (GLU4) (THR46) [view usage] : a.152.1.1 |AhpD-like |AhpD-like |AhpD |Antioxidant defense protein AhpD |Mycobacterium tuberculosis [TaxId: 1773]
d2j7aa_ : (TYR404) (SER470) [view usage] : a.138.1.3 |Multiheme cytochromes |Multiheme cytochromes |Di-heme elbow motif |automated matches |Desulfovibrio vulgaris [TaxId: 882]
d1wdya_ : (THR275) (ASP303) [view usage] : d.211.1.1 |beta-hairpin-alpha-hairpin repeat |Ankyrin repeat |Ankyrin repeat |RNase L, 2-5a-dependent ribonuclease |Human (Homo sapiens) [TaxId: 9606]
d1k8ke_ : (SER87) (GLN167) [view usage] : a.148.1.1 |Arp2/3 complex 21 kDa subunit ARPC3 |Arp2/3 complex 21 kDa subunit ARPC3 |Arp2/3 complex 21 kDa subunit ARPC3 |Arp2/3 complex 21 kDa subunit ARPC3 |Cow (Bos taurus) [TaxId: 9913]
d1txga1 : (GLU289) (PHE334) [view usage] : a.100.1.6 |6-phosphogluconate dehydrogenase C-terminal domain-like |6-phosphogluconate dehydrogenase C-terminal domain-like |Glycerol-3-phosphate dehydrogenase |Glycerol-3-phosphate dehydrogenase |Archaeoglobus fulgidus [TaxId: 2234]
d3atpa_ : (ASN39) (GLU124) [view usage] : a.24.2.0 |Four-helical up-and-down bundle |Aspartate receptor, ligand-binding domain |automated matches |automated matches |Escherichia coli [TaxId: 316407]
d1zuja1 : (ASP103) (GLY167) [view usage] : a.25.1.1 |Ferritin-like |Ferritin-like |Ferritin |Dodecameric ferritin homolog |Lactococcus lactis, DpsA [TaxId: 1358]
d2jeua_ : (THR3) (MET75) [view usage] : b.91.1.0 |E2 regulatory, transactivation domain |E2 regulatory, transactivation domain |automated matches |automated matches |Bovine papillomavirus type 1 [TaxId: 10559]
d1htjf_ : (GLY432) (GLY484) [view usage] : a.91.1.1 |Regulator of G-protein signaling, RGS |Regulator of G-protein signaling, RGS |Regulator of G-protein signaling, RGS |Pdz-RhoGEF RGS-like domain |Human (Homo sapiens) [TaxId: 9606]
d3q2za_ : (ARG317) (THR368) [view usage] : a.128.1.2 |Terpenoid synthases |Terpenoid synthases |Squalene synthase |automated matches |Human (Homo sapiens) [TaxId: 9606]
d4nn3a_ : (ALA93) (GLY126) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Desulfovibrio salexigens [TaxId: 526222]
d3o26a_ : (SER184) (ASN222) [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Papaver somniferum [TaxId: 3469]
d1usyd_ : (LEU159) (THR194) [view usage] : d.104.1.1 |Class II aaRS and biotin synthetases |Class II aaRS and biotin synthetases |Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain |ATP phosphoribosyltransferase regulatory subunit HisZ |Thermotoga maritima [TaxId: 2336]
d1y6ia2 : (LEU94) (ARG127) [view usage] : a.261.1.1 |GUN4-like |GUN4-like |GUN4-like |Mg-chelatase cofactor Gun4 |Synechocystis sp. PCC 6803 [TaxId: 1148]
d1u8va2 : (THR79) (ASN141) [view usage] : e.6.1.1 |Acyl-CoA dehydrogenase NM domain-like |Acyl-CoA dehydrogenase NM domain-like |Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains |4-hydroxybutyryl-CoA dehydratase AbfD, NM domains |Clostridium aminobutyricum [TaxId: 33953]
d1st6a1 : (THR6) (ASP73) [view usage] : a.24.9.1 |Four-helical up-and-down bundle |alpha-catenin/vinculin-like |alpha-catenin/vinculin |Vinculin |Chicken (Gallus gallus) [TaxId: 9031]
d3g0ja_ : (MET674) (LEU731) [view usage] : a.29.2.0 |Bromodomain-like |Bromodomain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1knya1 : (LEU192) (HIS241) [view usage] : a.24.16.1 |Four-helical up-and-down bundle |Nucleotidyltransferase substrate binding subunit/domain |Kanamycin nucleotidyltransferase (KNTase), C-terminal domain |Kanamycin nucleotidyltransferase (KNTase), C-terminal domain |Staphylococcus aureus [TaxId: 1280]
d1cola_ : (ILE153) (ARG201) [view usage] : f.1.1.1 |Toxins' membrane translocation domains |Colicin |Colicin |Colicin A |Escherichia coli [TaxId: 562]
d3brja1 : (LEU67) (LEU119) [view usage] : a.285.1.1 |MtlR-like |MtlR-like |MtlR-like |Mannitol operon repressor MtlR |Vibrio parahaemolyticus [TaxId: 670]
d1zcaa1 : (SER159) (ALA202) [view usage] : a.66.1.1 |Transducin (alpha subunit), insertion domain |Transducin (alpha subunit), insertion domain |Transducin (alpha subunit), insertion domain |Transducin (alpha subunit), insertion domain |Mouse (Mus musculus) [TaxId: 10090]
d3mb4b_ : (MET674) (GLU732) [view usage] : a.29.2.0 |Bromodomain-like |Bromodomain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1dova_ : (GLN84) (LEU198) [view usage] : a.24.9.1 |Four-helical up-and-down bundle |alpha-catenin/vinculin-like |alpha-catenin/vinculin |alpha-catenin |Mouse (Mus musculus) [TaxId: 10090]
d1pfwa1 : (PRO460) (LEU506) [view usage] : a.27.1.1 |Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases |Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases |Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases |Methionyl-tRNA synthetase (MetRS) |Escherichia coli [TaxId: 562]
d3v92b2 : (PHE204) (GLY239) [view usage] : a.119.1.0 |Lipoxigenase |Lipoxigenase |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2a1tc2 : (GLY76) (GLU127) [view usage] : e.6.1.1 |Acyl-CoA dehydrogenase NM domain-like |Acyl-CoA dehydrogenase NM domain-like |Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains |automated matches |Human (Homo sapiens) [TaxId: 9606]
d4pusa_ : (LEU3) (ARG49) [view usage] : a.95.1.1 |Influenza virus matrix protein M1 |Influenza virus matrix protein M1 |Influenza virus matrix protein M1 |automated matches |Influenza a virus [TaxId: 381518]
d4gxga_ : (LEU3) (THR62) [view usage] : a.224.1.1 |Glycolipid transfer protein, GLTP |Glycolipid transfer protein, GLTP |Glycolipid transfer protein, GLTP |Glycolipid transfer protein, GLTP |Human (Homo sapiens) [TaxId: 9606]
d2deia2 : (PRO230) (GLY294) [view usage] : d.58.26.0 |Ferredoxin-like |GHMP Kinase, C-terminal domain |automated matches |automated matches |Pyrococcus horikoshii [TaxId: 53953]
d3pw8a_ : (LEU80) (THR148) [view usage] : a.25.1.2 |Ferritin-like |Ferritin-like |Ribonucleotide reductase-like |automated matches |Escherichia coli [TaxId: 511145]
d3uvya_ : (MET107) (LEU164) [view usage] : a.29.2.0 |Bromodomain-like |Bromodomain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3brjb_ : (LEU67) (LEU119) [view usage] : a.285.1.1 |MtlR-like |MtlR-like |MtlR-like |Mannitol operon repressor MtlR |Vibrio parahaemolyticus [TaxId: 670]
d2a5yb2 : (LEU68) (VAL105) [view usage] : a.77.1.3 |DEATH domain |DEATH domain |Caspase recruitment domain, CARD |Cell death protein 4, CED-4 |Nematode (Caenorhabditis elegans) [TaxId: 6239]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.1, a.119, c.94, c.2, d.58, a.128, a.127, d.104, e.6, d.3, d.211, a.25, a.152, a.100, b.91, f.13, c.3, a.138, a.224, a.29,
f.1, a.91, a.160, a.66, a.77, a.24, a.27, e.38, a.28, f.59, a.95, a.208, d.360, a.191, f.34, a.285, a.148, a.261