Tableau information
Concept source: d3pe1a_ amino acid (a.a.) range (THR251)(LEU273)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: HHH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(THR251) (ASN262) H1
(ASP266) (PHE269) H2
(PHE269) (LEU273) H3
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
H2 -130.4° H2
H3 -144.0° -40.3°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±13.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d2chna1 : (ASN520) (ASN581) [view usage] : a.246.1.1 |Hyaluronidase domain-like |Hyaluronidase post-catalytic domain-like |Hyaluronidase post-catalytic domain-like |Glucosaminidase GH84 post-catalytic domain |Bacteroides thetaiotaomicron [TaxId: 818]
d2wy7a_ : (ALA11) (GLU46) [view usage] : a.102.4.4 |alpha/alpha toroid |Terpenoid cyclases/Protein prenyltransferases |Complement components |Thio-ester containing domain (TED) from Complement C3, aka C3d or C3dg |Human (Homo sapiens) [TaxId: 9606]
d1sxja1 : (LYS550) (ASP584) [view usage] : a.80.1.1 |post-AAA+ oligomerization domain-like |post-AAA+ oligomerization domain-like |DNA polymerase III clamp loader subunits, C-terminal domain |Replication factor C1 |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1h1ha_ : (THR6) (ARG34) [view usage] : d.5.1.1 |RNase A-like |RNase A-like |Ribonuclease A-like |Eosinophil cationic protein (ECP), ribonuclease 3 |Human (Homo sapiens) [TaxId: 9606]
d1d5na1 : (VAL53) (LEU88) [view usage] : a.2.11.1 |Long alpha-hairpin |Fe,Mn superoxide dismutase (SOD), N-terminal domain |Fe,Mn superoxide dismutase (SOD), N-terminal domain |Mn superoxide dismutase (MnSOD) |Escherichia coli [TaxId: 562]
d1yova_ : (PRO190) (ASN230) [view usage] : c.111.1.2 |Activating enzymes of the ubiquitin-like proteins |Activating enzymes of the ubiquitin-like proteins |Ubiquitin activating enzymes (UBA) |Amyloid beta precursor protein-binding protein 1, APPBP1 |Human (Homo sapiens) [TaxId: 9606]
d1a7va_ : (LYS75) (ARG121) [view usage] : a.24.3.2 |Four-helical up-and-down bundle |Cytochromes |Cytochrome c'-like |Cytochrome c' |Rhodopseudomonas palustris [TaxId: 1076]
d1x6ib_ : (LYS206) (HIS230) [view usage] : a.218.1.0 |YgfY-like |YgfY-like |automated matches |automated matches |Escherichia coli [TaxId: 562]
d1ar1b2 : (SER25) (SER103) [view usage] : f.17.2.1 |Transmembrane helix hairpin |Cytochrome c oxidase subunit II-like, transmembrane region |Cytochrome c oxidase subunit II-like, transmembrane region |Bacterial aa3 type cytochrome c oxidase subunit II |Paracoccus denitrificans [TaxId: 266]
d1s35a2 : (PHE1170) (ASN1220) [view usage] : a.7.1.1 |Spectrin repeat-like |Spectrin repeat |Spectrin repeat |Spectrin beta chain |Human (Homo sapiens) [TaxId: 9606]
d2ch2a_ : (SER219) (GLY248) [view usage] : c.67.1.0 |PLP-dependent transferase-like |PLP-dependent transferases |automated matches |automated matches |African malaria mosquito (Anopheles gambiae) [TaxId: 7165]
d2p6zb_ : (ARG6) (GLY39) [view usage] : d.5.1.0 |RNase A-like |RNase A-like |automated matches |automated matches |Frog (Rana pipiens) [TaxId: 8404]
d2dgmc_ : (LYS3) (LEU50) [view usage] : c.67.1.6 |PLP-dependent transferase-like |PLP-dependent transferases |Pyridoxal-dependent decarboxylase |Glutamate decarboxylase beta, GadB |Escherichia coli [TaxId: 562]
d1n4pb_ : (ASN68) (GLY136) [view usage] : a.102.4.3 |alpha/alpha toroid |Terpenoid cyclases/Protein prenyltransferases |Protein prenyltransferases |Protein farnesyltransferase, beta-subunit |Norway rat (Rattus norvegicus) [TaxId: 10116]
d2choa1 : (GLU521) (ASN581) [view usage] : a.246.1.1 |Hyaluronidase domain-like |Hyaluronidase post-catalytic domain-like |Hyaluronidase post-catalytic domain-like |Glucosaminidase GH84 post-catalytic domain |Bacteroides thetaiotaomicron [TaxId: 818]
d4qq7a2 : (PRO84) (ASN141) [view usage] : a.45.1.0 |GST C-terminal domain-like |GST C-terminal domain-like |automated matches |automated matches |Burkholderia cenocepacia [TaxId: 216591]
d2cdyc1 : (VAL52) (MET87) [view usage] : a.2.11.0 |Long alpha-hairpin |Fe,Mn superoxide dismutase (SOD), N-terminal domain |automated matches |automated matches |Deinococcus radiodurans [TaxId: 243230]
d1ggea2 : (PRO52) (ARG72) [view usage] : e.5.1.1 |Heme-dependent catalase-like |Heme-dependent catalase-like |Heme-dependent catalases |Catalase II |Escherichia coli, HPII [TaxId: 562]
d2gsce_ : (LEU14) (ARG63) [view usage] : a.29.16.1 |Bromodomain-like |IVS-encoded protein-like |IVS-encoded protein-like |automated matches |Xanthomonas campestris pv. campestris [TaxId: 340]
d3j6vr_ : (CYS70) (ALA125) [view usage] : i.1.1.3 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Small subunit |Eukaryotic, mitochondrial (28S subunit) |Cow (Bos taurus) [TaxId: 9913]
d2vvsa1 : (GLU521) (ASN581) [view usage] : a.246.1.0 |Hyaluronidase domain-like |Hyaluronidase post-catalytic domain-like |automated matches |automated matches |Bacteroides thetaiotaomicron [TaxId: 226186]
d4enua1 : (PRO52) (ARG72) [view usage] : e.5.1.1 |Heme-dependent catalase-like |Heme-dependent catalase-like |Heme-dependent catalases |automated matches |Escherichia coli K-12 [TaxId: 83333]
d1i1wa_ : (VAL6) (ALA38) [view usage] : c.1.8.3 |TIM beta/alpha-barrel |(Trans)glycosidases |beta-glycanases |Xylanase A, catalytic core |Thermoascus aurantiacus [TaxId: 5087]
d2b05a_ : (PRO190) (THR234) [view usage] : a.118.7.1 |alpha-alpha superhelix |14-3-3 protein |14-3-3 protein |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2p6za_ : (GLU4) (GLY39) [view usage] : d.5.1.0 |RNase A-like |RNase A-like |automated matches |automated matches |Frog (Rana pipiens) [TaxId: 8404]
d2wy8a_ : (ASP10) (GLU46) [view usage] : a.102.4.4 |alpha/alpha toroid |Terpenoid cyclases/Protein prenyltransferases |Complement components |Thio-ester containing domain (TED) from Complement C3, aka C3d or C3dg |Human (Homo sapiens) [TaxId: 9606]
d1f3aa1 : (ASP84) (ARG130) [view usage] : a.45.1.1 |GST C-terminal domain-like |GST C-terminal domain-like |Glutathione S-transferase (GST), C-terminal domain |Class alpha GST |Mouse (Mus musculus), (a1-1) [TaxId: 10090]
d2cdya1 : (VAL52) (MET87) [view usage] : a.2.11.0 |Long alpha-hairpin |Fe,Mn superoxide dismutase (SOD), N-terminal domain |automated matches |automated matches |Deinococcus radiodurans [TaxId: 243230]
d4enra1 : (PRO52) (ARG72) [view usage] : e.5.1.1 |Heme-dependent catalase-like |Heme-dependent catalase-like |Heme-dependent catalases |automated matches |Escherichia coli K-12 [TaxId: 83333]
d1wena_ : (CYS37) (GLU65) [view usage] : g.50.1.2 |FYVE/PHD zinc finger |FYVE/PHD zinc finger |PHD domain |Inhibitor of growth protein 4, Ing4 |Mouse (Mus musculus) [TaxId: 10090]
d1fmta1 : (SER208) (MET235) [view usage] : b.46.1.1 |FMT C-terminal domain-like |FMT C-terminal domain-like |Post formyltransferase domain |Methionyl-tRNAfmet formyltransferase, C-terminal domain |Escherichia coli [TaxId: 562]
d3kkya1 : (VAL52) (MET87) [view usage] : a.2.11.1 |Long alpha-hairpin |Fe,Mn superoxide dismutase (SOD), N-terminal domain |Fe,Mn superoxide dismutase (SOD), N-terminal domain |automated matches |Deinococcus radiodurans [TaxId: 1299]
d1m56b2 : (SER48) (GLN126) [view usage] : f.17.2.1 |Transmembrane helix hairpin |Cytochrome c oxidase subunit II-like, transmembrane region |Cytochrome c oxidase subunit II-like, transmembrane region |Bacterial aa3 type cytochrome c oxidase subunit II |Rhodobacter sphaeroides [TaxId: 1063]
d3kvta_ : (PRO83) (ARG111) [view usage] : d.42.1.2 |POZ domain |POZ domain |Tetramerization domain of potassium channels |akv3.1 voltage-gated potassium channel |California sea hare (Aplysia californica) [TaxId: 6500]
d1wyub_ : (LEU82) (THR120) [view usage] : c.67.1.7 |PLP-dependent transferase-like |PLP-dependent transferases |Glycine dehydrogenase subunits (GDC-P) |Glycine dehydrogenase subunit 2 (P-protein) |Thermus thermophilus [TaxId: 274]
d3p9ra1 : (PRO52) (ARG72) [view usage] : e.5.1.1 |Heme-dependent catalase-like |Heme-dependent catalase-like |Heme-dependent catalases |automated matches |Escherichia coli K-12 [TaxId: 83333]
d3gzna_ : (PHE196) (ASN237) [view usage] : c.111.1.2 |Activating enzymes of the ubiquitin-like proteins |Activating enzymes of the ubiquitin-like proteins |Ubiquitin activating enzymes (UBA) |Amyloid beta precursor protein-binding protein 1, APPBP1 |Human (Homo sapiens) [TaxId: 9606]
d2ecpa_ : (THR668) (LYS702) [view usage] : c.87.1.4 |UDP-Glycosyltransferase/glycogen phosphorylase |UDP-Glycosyltransferase/glycogen phosphorylase |Oligosaccharide phosphorylase |Maltodextrin phosphorylase (MALP) |Escherichia coli [TaxId: 562]
d1p80a2 : (PRO52) (ARG72) [view usage] : e.5.1.1 |Heme-dependent catalase-like |Heme-dependent catalase-like |Heme-dependent catalases |Catalase II |Escherichia coli, HPII [TaxId: 562]
d3hq2a_ : (THR5) (THR59) [view usage] : d.92.1.0 |Zincin-like |Metalloproteases ("zincins"), catalytic domain |automated matches |automated matches |Bacillus subtilis [TaxId: 1423]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
e.5, c.1, c.67, i.1, a.118, a.102, d.92, d.144, c.87, c.111, d.5, a.45, a.29, d.42, a.24, a.80, a.7, a.2, a.218, a.246,
f.17, g.50, b.46