Tableau information
Concept source: d1od2a2 amino acid (a.a.) range (ARG2036)(GLU2081)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: HHH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(ARG2036) (LEU2047) H1
(ASP2049) (SER2059) H2
(ALA2064) (GLU2081) H3
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
H2 -101.8° H2
H3 101.1° -153.0°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±9.8° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d2f43a1 : (ILE461) (THR502) [view usage] : a.69.1.0 |Left-handed superhelix |C-terminal domain of alpha and beta subunits of F1 ATP synthase |automated matches |automated matches |Norway rat (Rattus norvegicus) [TaxId: 10116]
d1am4a_ : (PRO131) (LEU163) [view usage] : a.116.1.1 |GTPase activation domain, GAP |GTPase activation domain, GAP |BCR-homology GTPase activation domain (BH-domain) |p50 RhoGAP domain |Human (Homo sapiens) [TaxId: 9606]
d1naxa_ : (ASP265) (TYR321) [view usage] : a.123.1.1 |Nuclear receptor ligand-binding domain |Nuclear receptor ligand-binding domain |Nuclear receptor ligand-binding domain |Thyroid hormone receptor beta (TR-beta) |Human (Homo sapiens) [TaxId: 9606]
d3vb9a_ : (LEU240) (LYS305) [view usage] : e.65.1.1 |VPA0735-like |VPA0735-like |VPA0735-like |Hypothetical protein VPA0735 |Vibrio parahaemolyticus [TaxId: 670]
d3o7ba_ : (PRO16) (LYS51) [view usage] : c.116.1.0 |alpha/beta knot |alpha/beta knot |automated matches |automated matches |Archaeoglobus fulgidus [TaxId: 2234]
d2v4ja2 : (THR6) (GLU60) [view usage] : d.58.36.2 |Ferredoxin-like |Nitrite/Sulfite reductase N-terminal domain-like |DsrA/DsrB N-terminal-domain-like |Dissimilatory sulfite reductase subunit alpha, DsrA |Desulfovibrio vulgaris [TaxId: 881]
d1e2xa2 : (LEU171) (GLN227) [view usage] : a.78.1.1 |GntR ligand-binding domain-like |GntR ligand-binding domain-like |GntR ligand-binding domain-like |Fatty acid responsive transcription factor FadR, C-terminal domain |Escherichia coli [TaxId: 562]
d1gvnd_ : (ASN66) (GLY110) [view usage] : c.37.1.21 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Plasmid maintenance system epsilon/zeta, toxin zeta subunit |Plasmid maintenance system epsilon/zeta, toxin zeta subunit |Streptococcus pyogenes [TaxId: 1314]
d1bcch_ : (PRO16) (ARG65) [view usage] : f.28.1.1 |Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) |Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) |Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) |Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) |Chicken (Gallus gallus) [TaxId: 9031]
d3bz6a1 : (ASN20) (GLN54) [view usage] : a.4.5.75 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |PSPTO2686-like |Hypothetical protein PSPTO2686 |Pseudomonas syringae pv. tomato [TaxId: 323]
d1fx2a_ : (ALA981) (LEU1015) [view usage] : d.58.29.1 |Ferredoxin-like |Nucleotide cyclase |Adenylyl and guanylyl cyclase catalytic domain |Receptor-type monomeric adenylyl cyclase |Trypanosome (Trypanosoma brucei), different isoform [TaxId: 5691]
d3oxpa_ : (ASP107) (TYR147) [view usage] : d.112.1.0 |Phoshotransferase/anion transport protein |Phoshotransferase/anion transport protein |automated matches |automated matches |Yersinia pestis [TaxId: 214092]
d2vnud4 : (SER844) (ASN910) [view usage] : b.40.4.16 |OB-fold |Nucleic acid-binding proteins |RNB domain-like |Exosome complex exonuclease RRP44 |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d2edga_ : (ASN81) (GLY99) [view usage] : b.84.1.0 |Barrel-sandwich hybrid |Single hybrid motif |automated matches |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d1be3h_ : (ASP15) (LEU77) [view usage] : f.28.1.1 |Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) |Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) |Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) |Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) |Cow (Bos taurus) [TaxId: 9913]
d3qbga_ : (GLN21) (GLY88) [view usage] : f.13.1.0 |Family A G protein-coupled receptor-like |Family A G protein-coupled receptor-like |automated matches |automated matches |Natronomonas pharaonis [TaxId: 2257]
d1hw2a2 : (LEU171) (LYS228) [view usage] : a.78.1.1 |GntR ligand-binding domain-like |GntR ligand-binding domain-like |GntR ligand-binding domain-like |Fatty acid responsive transcription factor FadR, C-terminal domain |Escherichia coli [TaxId: 562]
d3pb2f_ : (SER207) (ARG240) [view usage] : c.1.10.1 |TIM beta/alpha-barrel |Aldolase |Class I aldolase |automated matches |Thermotoga maritima [TaxId: 2336]
d3qbka_ : (GLN21) (GLY88) [view usage] : f.13.1.0 |Family A G protein-coupled receptor-like |Family A G protein-coupled receptor-like |automated matches |automated matches |Natronomonas pharaonis [TaxId: 2257]
d2g25a2 : (LYS309) (PHE337) [view usage] : c.36.1.10 |Thiamin diphosphate-binding fold (THDP-binding) |Thiamin diphosphate-binding fold (THDP-binding) |TK-like PP module |Pyruvate dehydrogenase E1 component, PP module |Escherichia coli [TaxId: 562]
d1l0nh_ : (PRO16) (ARG65) [view usage] : f.28.1.1 |Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) |Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) |Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) |Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) |Cow (Bos taurus) [TaxId: 9913]
d1scec_ : (PRO44) (GLY75) [view usage] : d.97.1.1 |Cell cycle regulatory proteins |Cell cycle regulatory proteins |Cell cycle regulatory proteins |suc1 |Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
d3flua_ : (THR204) (PRO247) [view usage] : c.1.10.0 |TIM beta/alpha-barrel |Aldolase |automated matches |automated matches |Neisseria meningitidis [TaxId: 491]
d1uuzb_ : (LEU6) (ALA36) [view usage] : d.233.1.1 |Inhibitor of vertebrate lysozyme, Ivy |Inhibitor of vertebrate lysozyme, Ivy |Inhibitor of vertebrate lysozyme, Ivy |Inhibitor of vertebrate lysozyme, Ivy |Pseudomonas aeruginosa [TaxId: 287]
d3a7ka_ : (GLN21) (GLY88) [view usage] : f.13.1.0 |Family A G protein-coupled receptor-like |Family A G protein-coupled receptor-like |automated matches |automated matches |Natronomonas pharaonis [TaxId: 348780]
d1zh5a1 : (GLY5) (LYS54) [view usage] : a.4.5.46 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |La domain |Lupus La autoantigen N-terminal domain |Human (Homo sapiens) [TaxId: 9606]
d3a7kb_ : (THR20) (GLY88) [view usage] : f.13.1.0 |Family A G protein-coupled receptor-like |Family A G protein-coupled receptor-like |automated matches |automated matches |Natronomonas pharaonis [TaxId: 348780]
d2x63a_ : (GLY105) (GLY144) [view usage] : c.130.1.1 |Alpha-2,3/8-sialyltransferase CstII |Alpha-2,3/8-sialyltransferase CstII |Alpha-2,3/8-sialyltransferase CstII |automated matches |Campylobacter jejuni [TaxId: 197]
d3di1b_ : (SER207) (SER245) [view usage] : c.1.10.0 |TIM beta/alpha-barrel |Aldolase |automated matches |automated matches |Staphylococcus aureus [TaxId: 93062]
d1foka1 : (PHE17) (GLN61) [view usage] : a.4.5.12 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |Restriction endonuclease FokI, N-terminal (recognition) domain |Restriction endonuclease FokI, N-terminal (recognition) domain |Flavobacterium okeanokoites [TaxId: 244]
d1kyof_ : (ASP76) (LEU146) [view usage] : f.28.1.1 |Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) |Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) |Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) |Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1ezvh_ : (ASP76) (LEU146) [view usage] : f.28.1.1 |Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) |Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) |Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) |Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1j0ma1 : (GLY226) (TYR293) [view usage] : a.102.3.2 |alpha/alpha toroid |Chondroitin AC/alginate lyase |Hyaluronate lyase-like catalytic, N-terminal domain |Xanthan lyase |Bacillus sp. GL1 [TaxId: 84635]
d1ijxb_ : (LEU52) (LEU107) [view usage] : a.141.1.1 |Frizzled cysteine-rich domain |Frizzled cysteine-rich domain |Frizzled cysteine-rich domain |Secreted Frizzled-related protein 3 (SFRP-3;fzb) |Mouse (Mus musculus) [TaxId: 10090]
d1a3ad_ : (HIS111) (LEU144) [view usage] : d.112.1.1 |Phoshotransferase/anion transport protein |Phoshotransferase/anion transport protein |IIA domain of mannitol-specific and ntr phosphotransferase EII |Phosphotransferase IIa-mannitol |Escherichia coli [TaxId: 562]
d3c8nc_ : (TRP249) (LEU275) [view usage] : c.1.16.0 |TIM beta/alpha-barrel |Bacterial luciferase-like |automated matches |automated matches |Mycobacterium tuberculosis [TaxId: 83332]
d3abwb_ : (THR20) (GLY88) [view usage] : f.13.1.0 |Family A G protein-coupled receptor-like |Family A G protein-coupled receptor-like |automated matches |automated matches |Natronomonas pharaonis [TaxId: 348780]
d3mm5a1 : (THR3) (ASP57) [view usage] : d.58.36.2 |Ferredoxin-like |Nitrite/Sulfite reductase N-terminal domain-like |DsrA/DsrB N-terminal-domain-like |Dissimilatory sulfite reductase subunit alpha, DsrA |Archaeoglobus fulgidus [TaxId: 2234]
d1nmra_ : (PRO40) (VAL78) [view usage] : a.144.1.1 |PABP domain-like |PABC (PABP) domain |PABC (PABP) domain |poly(A) binding protein |Trypanosoma cruzi [TaxId: 5693]
d3raja_ : (THR144) (ALA200) [view usage] : c.23.14.3 |Flavodoxin-like |N-(deoxy)ribosyltransferase-like |ADP ribosyl cyclase-like |ADP ribosyl cyclase |Human (Homo sapiens) [TaxId: 9606]
d1a3ac_ : (HIS111) (LEU144) [view usage] : d.112.1.1 |Phoshotransferase/anion transport protein |Phoshotransferase/anion transport protein |IIA domain of mannitol-specific and ntr phosphotransferase EII |Phosphotransferase IIa-mannitol |Escherichia coli [TaxId: 562]
d3nx1a_ : (PRO96) (GLY124) [view usage] : b.60.1.0 |Lipocalins |Lipocalins |automated matches |automated matches |Enterobacter sp. [TaxId: 418698]
d1rw1a_ : (GLY60) (GLN86) [view usage] : c.47.1.12 |Thioredoxin fold |Thioredoxin-like |ArsC-like |Hypothetical protein PA3664 (YffB) |Pseudomonas aeruginosa [TaxId: 287]
d1ro7a_ : (GLY105) (GLY144) [view usage] : c.130.1.1 |Alpha-2,3/8-sialyltransferase CstII |Alpha-2,3/8-sialyltransferase CstII |Alpha-2,3/8-sialyltransferase CstII |Alpha-2,3/8-sialyltransferase CstII |Campylobacter jejuni [TaxId: 197]
d1jiia_ : (VAL146) (TYR170) [view usage] : c.26.1.1 |Adenine nucleotide alpha hydrolase-like |Nucleotidylyl transferase |Class I aminoacyl-tRNA synthetases (RS), catalytic domain |Tyrosyl-tRNA synthetase (TyrRS) |Staphylococcus aureus [TaxId: 1280]
d2j4aa_ : (ASP265) (TYR321) [view usage] : a.123.1.1 |Nuclear receptor ligand-binding domain |Nuclear receptor ligand-binding domain |Nuclear receptor ligand-binding domain |automated matches |Human (Homo sapiens) [TaxId: 9606]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.1, d.58, c.26, a.102, c.14, c.23, b.40, c.37, c.36, c.47, b.60, a.123, c.116, b.84, a.4, f.13, a.116, d.112, a.69, a.144,
c.130, e.65, d.97, d.233, a.141, f.28, a.78